Wall clock time and date at job start Mon Mar 30 2020 00:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42891 * 114.00123 * 2 1 4 4 C 1.52996 * 109.47396 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47538 * 180.02562 * 4 3 2 6 6 C 1.36743 * 127.13890 * 273.70765 * 5 4 3 7 7 C 1.50695 * 126.34448 * 359.94438 * 6 5 4 8 8 N 1.30288 * 107.30483 * 179.97438 * 6 5 4 9 9 N 1.28525 * 110.05543 * 359.72738 * 8 6 5 10 10 C 1.31214 * 109.86067 * 0.45497 * 9 8 6 11 11 N 1.38581 * 126.47456 * 179.82009 * 10 9 8 12 12 C 1.46898 * 110.99934 * 306.03503 * 11 10 9 13 13 C 1.46904 * 110.99847 * 69.98569 * 11 10 9 14 14 H 1.09005 * 109.46985 * 54.99857 * 13 11 10 15 15 C 1.53002 * 109.46861 * 295.00031 * 13 11 10 16 16 C 1.50695 * 109.47273 * 174.99920 * 13 11 10 17 17 H 1.08003 * 120.00078 * 0.02562 * 16 13 11 18 18 C 1.37876 * 120.00430 * 179.97438 * 16 13 11 19 19 N 1.31514 * 119.99736 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 120.00340 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.47059 * 90.00011 * 20 18 16 22 22 H 1.48500 * 109.47216 * 210.00674 * 20 18 16 23 23 H 1.48507 * 109.47149 * 330.00073 * 20 18 16 24 24 H 1.08998 * 109.47058 * 300.00083 * 1 2 3 25 25 H 1.08997 * 109.46669 * 60.00084 * 1 2 3 26 26 H 1.08999 * 109.47187 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46893 * 60.00012 * 3 2 1 28 28 H 1.08998 * 109.47418 * 300.00185 * 3 2 1 29 29 H 1.09002 * 109.47006 * 60.00183 * 4 3 2 30 30 H 1.08998 * 109.47071 * 300.00499 * 4 3 2 31 31 H 1.09005 * 109.47195 * 89.99699 * 7 6 5 32 32 H 1.09001 * 109.47012 * 210.00053 * 7 6 5 33 33 H 1.09010 * 109.47554 * 329.99944 * 7 6 5 34 34 H 1.08992 * 109.47370 * 54.17212 * 12 11 10 35 35 H 1.08999 * 109.47153 * 174.17305 * 12 11 10 36 36 H 1.09001 * 109.46965 * 294.17246 * 12 11 10 37 37 H 1.09008 * 109.46783 * 179.97438 * 15 13 11 38 38 H 1.08992 * 109.47145 * 300.00030 * 15 13 11 39 39 H 1.08997 * 109.47167 * 60.00392 * 15 13 11 40 40 H 0.96996 * 119.99853 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5229 0.0013 6 6 4.4033 3.3061 -1.0862 7 6 4.1454 2.9526 -2.5282 8 7 4.9273 4.4141 -0.6445 9 7 4.9991 4.3870 0.6384 10 6 4.5298 3.2468 1.0872 11 7 4.4485 2.8543 2.4138 12 6 5.7552 2.9636 3.0761 13 6 3.4282 3.6307 3.1309 14 1 2.4749 3.5474 2.6089 15 6 3.8520 5.0998 3.1878 16 6 3.2823 3.0953 4.5319 17 1 3.8873 2.2619 4.8573 18 6 2.3772 3.6700 5.3989 19 7 1.6409 4.6851 5.0029 20 14 2.1968 3.0067 7.1358 21 1 3.1365 3.7197 8.0379 22 1 0.8037 3.2187 7.6044 23 1 2.5068 1.5544 7.1458 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8463 -0.8899 29 1 3.8575 0.6435 -0.8891 30 1 3.8567 0.6438 0.8908 31 1 3.1460 3.2838 -2.8104 32 1 4.8837 3.4456 -3.1608 33 1 4.2201 1.8727 -2.6567 34 1 6.1440 3.9737 2.9482 35 1 5.6428 2.7494 4.1389 36 1 6.4482 2.2486 2.6326 37 1 3.0946 5.6759 3.7196 38 1 4.8052 5.1830 3.7097 39 1 3.9574 5.4870 2.1745 40 1 1.0044 5.0897 5.6128 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812077237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:08 Heat of formation + Delta-G solvation = 50.369804 kcal Electronic energy + Delta-G solvation = -21668.308289 eV Core-core repulsion = 18520.655648 eV Total energy + Delta-G solvation = -3147.652641 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.53657 -38.01790 -37.24714 -34.92234 -32.96532 -31.47689 -29.75483 -28.73824 -27.11753 -26.34000 -25.26712 -25.12836 -23.39337 -21.49255 -20.46298 -19.42228 -17.11408 -16.34676 -16.18832 -16.06004 -15.58074 -15.40660 -14.78385 -14.58578 -14.17933 -13.71552 -13.28063 -13.15598 -12.77214 -12.62899 -12.28061 -12.23430 -11.57738 -11.50268 -11.41503 -11.27669 -11.17077 -10.94955 -10.79135 -10.56091 -10.19355 -10.15253 -9.93351 -9.77556 -9.73063 -8.92743 -8.49705 -8.43013 -7.71812 -6.09905 -4.16139 2.11307 2.54715 3.26151 3.30504 3.33098 3.36423 3.78049 4.32713 4.60605 4.67115 4.72799 4.93975 5.07658 5.18365 5.22286 5.28304 5.36994 5.45622 5.58558 5.61203 5.66065 5.75223 5.85457 5.98676 6.21747 6.38071 6.46393 6.61959 6.82932 6.95857 7.04244 7.06671 7.14682 7.50408 7.62601 7.73631 7.89676 8.23271 8.44161 8.87212 9.23140 9.48768 10.96818 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.015990 B = 0.007006 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.708190 B = 3995.813945 C = 5145.119038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.388 6.388 3 C 0.050 3.950 4 C 0.120 3.880 5 N -0.470 5.470 6 C 0.155 3.845 7 C -0.059 4.059 8 N -0.293 5.293 9 N -0.313 5.313 10 C 0.378 3.622 11 N -0.471 5.471 12 C 0.045 3.955 13 C 0.226 3.774 14 H 0.034 0.966 15 C -0.174 4.174 16 C -0.508 4.508 17 H 0.066 0.934 18 C 0.062 3.938 19 N -0.889 5.889 20 Si 0.900 3.100 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.273 1.273 24 H 0.047 0.953 25 H 0.040 0.960 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.091 0.909 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.032 0.968 39 H 0.033 0.967 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.374 -8.134 -11.673 14.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.306 6.306 3 C -0.028 4.028 4 C -0.004 4.004 5 N -0.165 5.165 6 C -0.112 4.112 7 C -0.118 4.118 8 N -0.134 5.134 9 N -0.155 5.155 10 C 0.023 3.977 11 N -0.197 5.197 12 C -0.103 4.103 13 C 0.122 3.878 14 H 0.052 0.948 15 C -0.233 4.233 16 C -0.546 4.546 17 H 0.085 0.915 18 C -0.140 4.140 19 N -0.528 5.528 20 Si 0.728 3.272 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.131 0.869 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.110 0.890 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.789 -7.313 -11.580 13.719 hybrid contribution -0.880 -0.557 1.031 1.466 sum -0.091 -7.871 -10.548 13.161 Atomic orbital electron populations 1.22762 0.80284 1.02779 1.00443 1.87756 1.20309 1.26928 1.95584 1.22745 0.92924 0.85392 1.01757 1.21420 0.92172 0.80949 1.05847 1.46224 1.47646 1.15941 1.06734 1.24662 1.04323 0.90471 0.91768 1.20109 1.03454 1.02026 0.86200 1.73955 1.17394 1.17904 1.04186 1.74752 1.22137 1.16167 1.02481 1.22952 0.97796 0.87289 0.89702 1.59413 1.09871 1.56040 0.94410 1.22254 0.87601 0.99953 1.00479 1.19385 0.87247 0.88419 0.92766 0.94835 1.22446 1.01157 1.00132 0.99546 1.21010 1.21964 1.16294 0.95359 0.91541 1.24909 0.95425 0.94872 0.98772 1.69909 1.24072 1.22862 1.35907 0.86461 0.77314 0.79346 0.84101 1.20577 1.21249 1.19754 0.93384 0.94167 0.89421 0.91400 0.93144 0.88740 0.86876 0.90200 0.89048 0.90819 0.94098 0.89034 0.93683 0.89543 0.94878 0.94799 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.39 -5.27 10.70 -35.23 -0.38 -5.64 16 3 C 0.05 0.70 6.26 37.16 0.23 0.93 16 4 C 0.12 1.68 6.36 -4.04 -0.03 1.65 16 5 N -0.47 -8.09 2.81 -114.09 -0.32 -8.41 16 6 C 0.15 2.54 8.07 -154.02 -1.24 1.29 16 7 C -0.06 -0.61 10.25 36.00 0.37 -0.24 16 8 N -0.29 -5.95 12.18 32.99 0.40 -5.54 16 9 N -0.31 -6.99 9.70 30.31 0.29 -6.70 16 10 C 0.38 7.93 6.21 -318.88 -1.98 5.94 16 11 N -0.47 -10.31 4.77 -176.08 -0.84 -11.15 16 12 C 0.04 0.90 8.66 60.06 0.52 1.42 16 13 C 0.23 5.70 2.32 -68.86 -0.16 5.54 16 14 H 0.03 0.94 8.11 -51.93 -0.42 0.52 16 15 C -0.17 -4.44 8.20 37.16 0.30 -4.14 16 16 C -0.51 -13.40 7.80 -34.44 -0.27 -13.67 16 17 H 0.07 1.72 6.82 -52.48 -0.36 1.36 16 18 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 19 N -0.89 -24.93 11.32 55.43 0.63 -24.30 16 20 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 1.02 7.37 -51.93 -0.38 0.64 16 30 H 0.11 1.70 8.14 -51.93 -0.42 1.27 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.60 7.35 -51.92 -0.38 0.22 16 34 H 0.04 0.85 6.57 -51.93 -0.34 0.51 16 35 H 0.09 1.86 6.28 -51.93 -0.33 1.53 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 2.40 6.07 -51.92 -0.32 2.09 16 38 H 0.03 0.82 6.61 -51.93 -0.34 0.47 16 39 H 0.03 0.86 5.92 -51.93 -0.31 0.55 16 40 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 325.46 15.07 4.90 4.90 Total: -1.00 -31.30 325.46 -7.68 -38.98 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.12 Total: 0.36 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -1.23 Total: 1.79 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: 0.16 Total: -56.09 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: -0.38 Total: -5.64 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.30 -7.68 -38.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812077237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.351 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds