Wall clock time and date at job start Mon Mar 30 2020 00:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42891 * 114.00123 * 2 1 4 4 C 1.52996 * 109.47396 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47538 * 180.02562 * 4 3 2 6 6 C 1.36743 * 127.13890 * 273.70765 * 5 4 3 7 7 C 1.50695 * 126.34448 * 359.94438 * 6 5 4 8 8 N 1.30288 * 107.30483 * 179.97438 * 6 5 4 9 9 N 1.28525 * 110.05543 * 359.72738 * 8 6 5 10 10 C 1.31214 * 109.86067 * 0.45497 * 9 8 6 11 11 N 1.38581 * 126.47456 * 179.82009 * 10 9 8 12 12 C 1.46898 * 110.99934 * 306.03503 * 11 10 9 13 13 C 1.46904 * 110.99847 * 69.98569 * 11 10 9 14 14 H 1.09005 * 109.46985 * 54.99857 * 13 11 10 15 15 C 1.53002 * 109.46861 * 295.00031 * 13 11 10 16 16 C 1.50695 * 109.47273 * 174.99920 * 13 11 10 17 17 H 1.08003 * 120.00078 * 0.02562 * 16 13 11 18 18 C 1.37876 * 120.00430 * 179.97438 * 16 13 11 19 19 N 1.31514 * 119.99736 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 120.00340 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.47059 * 90.00011 * 20 18 16 22 22 H 1.48500 * 109.47216 * 210.00674 * 20 18 16 23 23 H 1.48507 * 109.47149 * 330.00073 * 20 18 16 24 24 H 1.08998 * 109.47058 * 300.00083 * 1 2 3 25 25 H 1.08997 * 109.46669 * 60.00084 * 1 2 3 26 26 H 1.08999 * 109.47187 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46893 * 60.00012 * 3 2 1 28 28 H 1.08998 * 109.47418 * 300.00185 * 3 2 1 29 29 H 1.09002 * 109.47006 * 60.00183 * 4 3 2 30 30 H 1.08998 * 109.47071 * 300.00499 * 4 3 2 31 31 H 1.09005 * 109.47195 * 89.99699 * 7 6 5 32 32 H 1.09001 * 109.47012 * 210.00053 * 7 6 5 33 33 H 1.09010 * 109.47554 * 329.99944 * 7 6 5 34 34 H 1.08992 * 109.47370 * 54.17212 * 12 11 10 35 35 H 1.08999 * 109.47153 * 174.17305 * 12 11 10 36 36 H 1.09001 * 109.46965 * 294.17246 * 12 11 10 37 37 H 1.09008 * 109.46783 * 179.97438 * 15 13 11 38 38 H 1.08992 * 109.47145 * 300.00030 * 15 13 11 39 39 H 1.08997 * 109.47167 * 60.00392 * 15 13 11 40 40 H 0.96996 * 119.99853 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5229 0.0013 6 6 4.4033 3.3061 -1.0862 7 6 4.1454 2.9526 -2.5282 8 7 4.9273 4.4141 -0.6445 9 7 4.9991 4.3870 0.6384 10 6 4.5298 3.2468 1.0872 11 7 4.4485 2.8543 2.4138 12 6 5.7552 2.9636 3.0761 13 6 3.4282 3.6307 3.1309 14 1 2.4749 3.5474 2.6089 15 6 3.8520 5.0998 3.1878 16 6 3.2823 3.0953 4.5319 17 1 3.8873 2.2619 4.8573 18 6 2.3772 3.6700 5.3989 19 7 1.6409 4.6851 5.0029 20 14 2.1968 3.0067 7.1358 21 1 3.1365 3.7197 8.0379 22 1 0.8037 3.2187 7.6044 23 1 2.5068 1.5544 7.1458 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8463 -0.8899 29 1 3.8575 0.6435 -0.8891 30 1 3.8567 0.6438 0.8908 31 1 3.1460 3.2838 -2.8104 32 1 4.8837 3.4456 -3.1608 33 1 4.2201 1.8727 -2.6567 34 1 6.1440 3.9737 2.9482 35 1 5.6428 2.7494 4.1389 36 1 6.4482 2.2486 2.6326 37 1 3.0946 5.6759 3.7196 38 1 4.8052 5.1830 3.7097 39 1 3.9574 5.4870 2.1745 40 1 1.0044 5.0897 5.6128 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812077237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:08 Heat of formation + Delta-G solvation = 30.944835 kcal Electronic energy + Delta-G solvation = -21669.150618 eV Core-core repulsion = 18520.655648 eV Total energy + Delta-G solvation = -3148.494971 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.99069 -39.07387 -39.02979 -36.22802 -34.91906 -32.75450 -31.10865 -30.51876 -28.47281 -27.32958 -27.19021 -26.88289 -24.58759 -23.24690 -21.80053 -21.07464 -18.54533 -18.11398 -17.72349 -17.14837 -16.96472 -16.88692 -16.41379 -15.84963 -15.51629 -15.31053 -14.81735 -14.45546 -14.12511 -13.71803 -13.49607 -13.45214 -13.25486 -13.09512 -12.98296 -12.73319 -12.67129 -12.55207 -12.43755 -12.30497 -12.08694 -12.04753 -11.51975 -11.17892 -10.93387 -10.79000 -10.54821 -9.96470 -9.46910 -8.16103 -6.29657 0.70470 1.24223 1.44325 1.44904 1.55654 1.81180 2.39740 2.66751 3.12363 3.16290 3.51727 3.59959 3.84854 4.07274 4.11778 4.16168 4.35385 4.46377 4.48157 4.56130 4.61494 4.66113 4.71118 4.72137 4.81253 4.93848 4.98099 5.03008 5.06472 5.09047 5.11157 5.40739 5.60088 5.63617 5.82485 5.96775 6.02138 6.18435 6.61261 6.79851 7.39433 7.74716 8.90815 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.015990 B = 0.007006 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.708190 B = 3995.813945 C = 5145.119038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.059 3.941 4 C 0.119 3.881 5 N -0.467 5.467 6 C 0.181 3.819 7 C -0.060 4.060 8 N -0.336 5.336 9 N -0.345 5.345 10 C 0.353 3.647 11 N -0.468 5.468 12 C 0.050 3.950 13 C 0.239 3.761 14 H -0.003 1.003 15 C -0.155 4.155 16 C -0.518 4.518 17 H 0.071 0.929 18 C 0.014 3.986 19 N -0.921 5.921 20 Si 0.967 3.033 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.263 1.263 24 H 0.032 0.968 25 H 0.059 0.941 26 H 0.111 0.889 27 H 0.024 0.976 28 H 0.070 0.930 29 H 0.139 0.861 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.027 0.973 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.032 0.968 39 H 0.028 0.972 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.454 -10.209 -13.080 16.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.314 6.314 3 C -0.019 4.019 4 C -0.004 4.004 5 N -0.162 5.162 6 C -0.087 4.087 7 C -0.118 4.118 8 N -0.176 5.176 9 N -0.188 5.188 10 C -0.005 4.005 11 N -0.194 5.194 12 C -0.098 4.098 13 C 0.133 3.867 14 H 0.015 0.985 15 C -0.215 4.215 16 C -0.557 4.557 17 H 0.089 0.911 18 C -0.185 4.185 19 N -0.560 5.560 20 Si 0.792 3.208 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.188 1.188 24 H 0.050 0.950 25 H 0.077 0.923 26 H 0.130 0.870 27 H 0.042 0.958 28 H 0.088 0.912 29 H 0.157 0.843 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.046 0.954 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.047 0.953 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.879 -9.408 -13.007 16.077 hybrid contribution -0.940 0.060 1.320 1.622 sum -0.062 -9.348 -11.687 14.965 Atomic orbital electron populations 1.22981 0.78880 1.04447 1.00604 1.87738 1.21834 1.26258 1.95576 1.22557 0.93127 0.85632 1.00564 1.21654 0.91882 0.79436 1.07392 1.46385 1.47093 1.16839 1.05857 1.25831 1.00563 0.88660 0.93671 1.20486 1.04941 1.04471 0.81936 1.73880 1.20175 1.20235 1.03359 1.74605 1.23030 1.17215 1.03928 1.22861 0.99643 0.88118 0.89848 1.59279 1.09815 1.55156 0.95114 1.22244 0.87262 0.99941 1.00331 1.19015 0.86815 0.88393 0.92475 0.98527 1.22238 1.00117 1.00391 0.98712 1.21265 1.22062 1.16399 0.95948 0.91122 1.25744 0.95001 0.95002 1.02739 1.70050 1.24641 1.24028 1.37271 0.85415 0.77181 0.79079 0.79136 1.20034 1.21124 1.18759 0.94963 0.92288 0.87046 0.95758 0.91199 0.84311 0.88173 0.88247 0.87579 0.87491 0.95414 0.89494 0.91045 0.92038 0.94842 0.95294 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.40 -10.04 10.70 -148.98 -1.59 -11.63 16 3 C 0.06 1.61 6.26 71.98 0.45 2.06 16 4 C 0.12 3.08 6.36 86.38 0.55 3.63 16 5 N -0.47 -15.53 2.81 -514.87 -1.45 -16.97 16 6 C 0.18 5.56 8.07 137.64 1.11 6.67 16 7 C -0.06 -0.99 10.25 71.23 0.73 -0.26 16 8 N -0.34 -13.52 12.18 -49.54 -0.60 -14.13 16 9 N -0.35 -15.72 9.70 -58.01 -0.56 -16.28 16 10 C 0.35 14.94 6.21 260.11 1.62 16.55 16 11 N -0.47 -20.90 4.77 -711.01 -3.39 -24.29 16 12 C 0.05 2.00 8.66 127.69 1.11 3.11 16 13 C 0.24 12.50 2.32 44.17 0.10 12.60 16 14 H 0.00 -0.19 8.11 -2.38 -0.02 -0.20 16 15 C -0.16 -8.29 8.20 71.98 0.59 -7.70 16 16 C -0.52 -27.89 7.80 25.60 0.20 -27.69 16 17 H 0.07 3.67 6.82 -2.91 -0.02 3.65 16 18 C 0.01 0.78 5.30 84.65 0.45 1.23 16 19 N -0.92 -53.04 11.32 21.45 0.24 -52.80 16 20 Si 0.97 42.67 29.54 68.60 2.03 44.70 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 22 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 24 H 0.03 0.73 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.14 2.38 7.37 -2.39 -0.02 2.37 16 30 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 31 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.11 1.53 8.14 -2.39 -0.02 1.52 16 33 H 0.11 1.12 7.35 -2.38 -0.02 1.11 16 34 H 0.03 1.17 6.57 -2.39 -0.02 1.16 16 35 H 0.09 3.54 6.28 -2.39 -0.01 3.53 16 36 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.06 3.57 6.07 -2.38 -0.01 3.56 16 38 H 0.03 1.71 6.61 -2.39 -0.02 1.70 16 39 H 0.03 1.53 5.92 -2.39 -0.01 1.52 16 40 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -70.67 325.46 3.85 -66.83 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 1.03 Total: 12.59 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 8.15 Total: 11.98 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -5.76 Total: -124.46 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -1.59 Total: -11.63 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -70.67 3.85 -66.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812077237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.771 kcal (2) G-P(sol) polarization free energy of solvation -70.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds