Wall clock time and date at job start Mon Mar 30 2020 00:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00348 * 2 1 4 4 C 1.52997 * 109.47385 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47447 * 175.04491 * 4 3 2 6 6 C 1.36733 * 127.13748 * 84.28076 * 5 4 3 7 7 C 1.50701 * 126.34672 * 359.95362 * 6 5 4 8 8 N 1.30295 * 107.30695 * 179.97438 * 6 5 4 9 9 N 1.28532 * 110.05124 * 0.02562 * 8 6 5 10 10 C 1.31215 * 109.86086 * 359.73653 * 9 8 6 11 11 N 1.38577 * 126.47408 * 180.25590 * 10 9 8 12 12 C 1.46895 * 111.00545 * 260.78731 * 11 10 9 13 13 C 1.46900 * 110.99556 * 24.74309 * 11 10 9 14 14 H 1.08994 * 109.47090 * 299.99299 * 13 11 10 15 15 C 1.52999 * 109.47558 * 59.99915 * 13 11 10 16 16 C 1.50702 * 109.46814 * 179.97438 * 13 11 10 17 17 H 1.07999 * 120.00366 * 359.97438 * 16 13 11 18 18 C 1.37882 * 120.00019 * 179.97438 * 16 13 11 19 19 N 1.31514 * 119.99842 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 120.00099 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.46918 * 59.99882 * 20 18 16 22 22 H 1.48497 * 109.47180 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47065 * 300.00119 * 20 18 16 24 24 H 1.09003 * 109.47165 * 300.00256 * 1 2 3 25 25 H 1.09009 * 109.46954 * 60.00097 * 1 2 3 26 26 H 1.08997 * 109.47771 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47119 * 299.99710 * 3 2 1 28 28 H 1.08999 * 109.47497 * 59.99875 * 3 2 1 29 29 H 1.08998 * 109.47435 * 295.04643 * 4 3 2 30 30 H 1.09004 * 109.47143 * 55.04273 * 4 3 2 31 31 H 1.09003 * 109.47768 * 89.99520 * 7 6 5 32 32 H 1.09005 * 109.47118 * 209.99339 * 7 6 5 33 33 H 1.09004 * 109.47018 * 329.98787 * 7 6 5 34 34 H 1.09003 * 109.47195 * 54.81558 * 12 11 10 35 35 H 1.08997 * 109.47453 * 174.82202 * 12 11 10 36 36 H 1.09004 * 109.47000 * 294.82226 * 12 11 10 37 37 H 1.09004 * 109.46896 * 59.99742 * 15 13 11 38 38 H 1.08996 * 109.47309 * 180.02562 * 15 13 11 39 39 H 1.08999 * 109.46664 * 299.99701 * 15 13 11 40 40 H 0.97003 * 119.99856 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1311 2.5177 -0.1187 6 6 4.3744 3.4065 0.8915 7 6 4.0770 3.1995 2.3543 8 7 4.9106 4.4659 0.3549 9 7 5.0213 4.3081 -0.9159 10 6 4.5629 3.1278 -1.2602 11 7 4.5223 2.6016 -2.5416 12 6 3.1839 2.7484 -3.1289 13 6 5.5436 3.2203 -3.3973 14 1 5.3672 4.2943 -3.4549 15 6 6.9303 2.9621 -2.8046 16 6 5.4695 2.6237 -4.7792 17 1 4.7373 1.8610 -4.9997 18 6 6.3364 3.0517 -5.7622 19 7 7.2277 3.9808 -5.4940 20 14 6.2451 2.3118 -7.4750 21 1 4.8989 2.5607 -8.0506 22 1 7.2765 2.9381 -8.3405 23 1 6.4866 0.8487 -7.3957 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6887 1.8463 -0.8900 28 1 1.6887 1.8464 0.8899 29 1 3.8630 0.7223 0.9319 30 1 3.8515 0.5687 -0.8414 31 1 4.9398 2.7431 2.8395 32 1 3.8640 4.1611 2.8214 33 1 3.2120 2.5447 2.4601 34 1 2.8841 3.7958 -3.0926 35 1 3.2030 2.4117 -4.1654 36 1 2.4715 2.1468 -2.5645 37 1 7.1066 1.8880 -2.7471 38 1 7.6880 3.4216 -3.4393 39 1 6.9841 3.3933 -1.8050 40 1 7.8374 4.2822 -6.1857 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812077238.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:11 Heat of formation + Delta-G solvation = 51.453323 kcal Electronic energy + Delta-G solvation = -21503.009510 eV Core-core repulsion = 18355.403854 eV Total energy + Delta-G solvation = -3147.605656 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.52711 -38.26057 -37.09696 -35.00687 -32.95860 -31.43598 -29.86720 -29.24267 -27.39889 -26.52870 -25.27949 -24.30041 -23.57321 -21.85209 -20.29400 -19.45083 -17.30113 -16.43304 -16.30963 -16.15588 -15.77563 -15.24256 -15.03799 -14.54732 -14.17420 -13.83954 -13.46381 -13.13357 -12.87837 -12.66079 -12.48914 -12.30779 -11.89689 -11.77111 -11.57124 -11.08614 -11.01936 -10.94473 -10.71636 -10.33059 -10.23565 -10.07226 -9.97198 -9.90381 -9.77885 -9.18531 -8.60552 -8.44565 -7.50710 -6.04121 -4.11708 2.14237 2.47591 3.30082 3.35324 3.36376 3.37028 3.60790 4.33843 4.53642 4.59308 4.69856 4.70568 4.95194 5.04123 5.05512 5.11164 5.27672 5.32725 5.38642 5.44839 5.52604 5.67415 5.77606 5.93154 6.09858 6.18592 6.39522 6.52355 6.76220 6.90591 6.95602 7.11062 7.20926 7.44903 7.69071 7.73879 7.96796 8.24169 8.45367 8.90063 9.30824 9.52761 11.02321 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.019812 B = 0.005847 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.911498 B = 4787.872707 C = 5906.705358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.048 3.952 4 C 0.116 3.884 5 N -0.480 5.480 6 C 0.148 3.852 7 C -0.057 4.057 8 N -0.287 5.287 9 N -0.314 5.314 10 C 0.386 3.614 11 N -0.464 5.464 12 C 0.040 3.960 13 C 0.228 3.772 14 H 0.026 0.974 15 C -0.132 4.132 16 C -0.517 4.517 17 H 0.065 0.935 18 C 0.064 3.936 19 N -0.884 5.884 20 Si 0.900 3.100 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.041 0.959 25 H 0.044 0.956 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.027 0.973 35 H 0.100 0.900 36 H 0.045 0.955 37 H 0.027 0.973 38 H 0.090 0.910 39 H 0.017 0.983 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.923 -6.797 12.736 18.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.303 6.303 3 C -0.030 4.030 4 C -0.008 4.008 5 N -0.178 5.178 6 C -0.119 4.119 7 C -0.116 4.116 8 N -0.127 5.127 9 N -0.157 5.157 10 C 0.030 3.970 11 N -0.189 5.189 12 C -0.108 4.108 13 C 0.124 3.876 14 H 0.044 0.956 15 C -0.191 4.191 16 C -0.556 4.556 17 H 0.083 0.917 18 C -0.138 4.138 19 N -0.522 5.522 20 Si 0.728 3.272 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.202 1.202 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.108 0.892 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.132 0.868 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.118 0.882 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.108 0.892 39 H 0.036 0.964 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.941 -5.979 12.513 17.664 hybrid contribution -0.891 -0.789 -0.913 1.500 sum -11.831 -6.768 11.600 17.898 Atomic orbital electron populations 1.22775 0.80314 1.03012 1.00224 1.87816 1.20231 1.26785 1.95508 1.22849 0.93391 0.85435 1.01340 1.21439 0.91543 0.81809 1.06024 1.46143 1.48919 1.15462 1.07228 1.24618 1.05060 0.88929 0.93316 1.20087 1.02085 1.03814 0.85661 1.73970 1.16126 1.20568 1.02064 1.74808 1.23192 1.12800 1.04904 1.23062 0.97197 0.88069 0.88669 1.59146 1.07675 1.55418 0.96710 1.22392 0.87170 0.99283 1.01925 1.19349 0.85481 0.93768 0.88972 0.95642 1.21809 1.00229 0.98930 0.98101 1.21020 1.18526 1.22562 0.93459 0.91716 1.24903 0.95068 0.94949 0.98929 1.69911 1.19764 1.28815 1.33684 0.86529 0.77741 0.79327 0.83603 1.20253 1.21233 1.20190 0.94006 0.93744 0.89237 0.92224 0.92793 0.88464 0.86840 0.90113 0.89119 0.91145 0.95425 0.88203 0.93593 0.95411 0.89161 0.96434 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.29 10.70 -35.23 -0.38 -4.67 16 3 C 0.05 0.54 6.25 37.16 0.23 0.77 16 4 C 0.12 1.50 6.22 -4.04 -0.03 1.47 16 5 N -0.48 -8.03 2.81 -114.09 -0.32 -8.36 16 6 C 0.15 2.41 8.07 -154.02 -1.24 1.17 16 7 C -0.06 -0.58 10.20 36.01 0.37 -0.22 16 8 N -0.29 -5.95 12.18 32.99 0.40 -5.55 16 9 N -0.31 -7.35 10.28 30.31 0.31 -7.04 16 10 C 0.39 8.15 5.91 -318.88 -1.88 6.27 16 11 N -0.46 -10.23 4.62 -176.09 -0.81 -11.05 16 12 C 0.04 0.76 9.36 60.06 0.56 1.32 16 13 C 0.23 5.95 1.74 -68.86 -0.12 5.83 16 14 H 0.03 0.76 7.89 -51.93 -0.41 0.35 16 15 C -0.13 -3.49 8.81 37.16 0.33 -3.16 16 16 C -0.52 -13.89 7.81 -34.44 -0.27 -14.16 16 17 H 0.06 1.67 6.45 -52.49 -0.34 1.34 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 19 N -0.88 -25.34 11.32 55.43 0.63 -24.71 16 20 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.04 0.34 8.14 -51.92 -0.42 -0.08 16 26 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.74 6.16 -51.93 -0.32 0.42 16 28 H 0.05 0.53 7.75 -51.93 -0.40 0.13 16 29 H 0.10 1.01 8.07 -51.93 -0.42 0.59 16 30 H 0.11 1.62 8.09 -51.93 -0.42 1.20 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.55 7.58 -51.93 -0.39 0.16 16 34 H 0.03 0.54 8.11 -51.93 -0.42 0.12 16 35 H 0.10 1.97 5.96 -51.93 -0.31 1.66 16 36 H 0.05 0.73 6.15 -51.93 -0.32 0.41 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 2.56 6.07 -51.93 -0.32 2.24 16 39 H 0.02 0.44 6.40 -51.93 -0.33 0.11 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 325.28 15.07 4.90 4.90 Total: -1.00 -32.48 325.28 -7.39 -39.88 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -6.07 Total: -1.63 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -1.03 Total: 2.33 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 0.21 Total: -56.71 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.38 Total: -4.67 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.48 -7.39 -39.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812077238.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.332 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds