Wall clock time and date at job start Mon Mar 30 2020 00:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00348 * 2 1 4 4 C 1.52997 * 109.47385 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47447 * 175.04491 * 4 3 2 6 6 C 1.36733 * 127.13748 * 84.28076 * 5 4 3 7 7 C 1.50701 * 126.34672 * 359.95362 * 6 5 4 8 8 N 1.30295 * 107.30695 * 179.97438 * 6 5 4 9 9 N 1.28532 * 110.05124 * 0.02562 * 8 6 5 10 10 C 1.31215 * 109.86086 * 359.73653 * 9 8 6 11 11 N 1.38577 * 126.47408 * 180.25590 * 10 9 8 12 12 C 1.46895 * 111.00545 * 260.78731 * 11 10 9 13 13 C 1.46900 * 110.99556 * 24.74309 * 11 10 9 14 14 H 1.08994 * 109.47090 * 299.99299 * 13 11 10 15 15 C 1.52999 * 109.47558 * 59.99915 * 13 11 10 16 16 C 1.50702 * 109.46814 * 179.97438 * 13 11 10 17 17 H 1.07999 * 120.00366 * 359.97438 * 16 13 11 18 18 C 1.37882 * 120.00019 * 179.97438 * 16 13 11 19 19 N 1.31514 * 119.99842 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 120.00099 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.46918 * 59.99882 * 20 18 16 22 22 H 1.48497 * 109.47180 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47065 * 300.00119 * 20 18 16 24 24 H 1.09003 * 109.47165 * 300.00256 * 1 2 3 25 25 H 1.09009 * 109.46954 * 60.00097 * 1 2 3 26 26 H 1.08997 * 109.47771 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47119 * 299.99710 * 3 2 1 28 28 H 1.08999 * 109.47497 * 59.99875 * 3 2 1 29 29 H 1.08998 * 109.47435 * 295.04643 * 4 3 2 30 30 H 1.09004 * 109.47143 * 55.04273 * 4 3 2 31 31 H 1.09003 * 109.47768 * 89.99520 * 7 6 5 32 32 H 1.09005 * 109.47118 * 209.99339 * 7 6 5 33 33 H 1.09004 * 109.47018 * 329.98787 * 7 6 5 34 34 H 1.09003 * 109.47195 * 54.81558 * 12 11 10 35 35 H 1.08997 * 109.47453 * 174.82202 * 12 11 10 36 36 H 1.09004 * 109.47000 * 294.82226 * 12 11 10 37 37 H 1.09004 * 109.46896 * 59.99742 * 15 13 11 38 38 H 1.08996 * 109.47309 * 180.02562 * 15 13 11 39 39 H 1.08999 * 109.46664 * 299.99701 * 15 13 11 40 40 H 0.97003 * 119.99856 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1311 2.5177 -0.1187 6 6 4.3744 3.4065 0.8915 7 6 4.0770 3.1995 2.3543 8 7 4.9106 4.4659 0.3549 9 7 5.0213 4.3081 -0.9159 10 6 4.5629 3.1278 -1.2602 11 7 4.5223 2.6016 -2.5416 12 6 3.1839 2.7484 -3.1289 13 6 5.5436 3.2203 -3.3973 14 1 5.3672 4.2943 -3.4549 15 6 6.9303 2.9621 -2.8046 16 6 5.4695 2.6237 -4.7792 17 1 4.7373 1.8610 -4.9997 18 6 6.3364 3.0517 -5.7622 19 7 7.2277 3.9808 -5.4940 20 14 6.2451 2.3118 -7.4750 21 1 4.8989 2.5607 -8.0506 22 1 7.2765 2.9381 -8.3405 23 1 6.4866 0.8487 -7.3957 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6887 1.8463 -0.8900 28 1 1.6887 1.8464 0.8899 29 1 3.8630 0.7223 0.9319 30 1 3.8515 0.5687 -0.8414 31 1 4.9398 2.7431 2.8395 32 1 3.8640 4.1611 2.8214 33 1 3.2120 2.5447 2.4601 34 1 2.8841 3.7958 -3.0926 35 1 3.2030 2.4117 -4.1654 36 1 2.4715 2.1468 -2.5645 37 1 7.1066 1.8880 -2.7471 38 1 7.6880 3.4216 -3.4393 39 1 6.9841 3.3933 -1.8050 40 1 7.8374 4.2822 -6.1857 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812077238.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:10 Heat of formation + Delta-G solvation = 30.412080 kcal Electronic energy + Delta-G solvation = -21503.921927 eV Core-core repulsion = 18355.403854 eV Total energy + Delta-G solvation = -3148.518073 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.98275 -39.08730 -38.86758 -36.26114 -34.92874 -32.69553 -31.29422 -30.87387 -28.76915 -27.26125 -27.18235 -26.04522 -24.59889 -23.60042 -21.60825 -21.14878 -18.65111 -18.08023 -17.60134 -17.19903 -17.15079 -16.69294 -16.40210 -15.88150 -15.50001 -15.43021 -14.77058 -14.45535 -14.24727 -13.86236 -13.62312 -13.45071 -13.30324 -13.01773 -12.82612 -12.71978 -12.62240 -12.52912 -12.30314 -12.21528 -12.10754 -12.05791 -11.48442 -11.12650 -11.10743 -10.73231 -10.57600 -10.26292 -9.22808 -8.13119 -6.28606 0.77058 1.20206 1.45785 1.48149 1.55892 1.85846 2.40478 2.66608 3.09538 3.19455 3.51273 3.61741 3.81855 3.98385 4.07139 4.15801 4.35607 4.43599 4.49655 4.51878 4.55546 4.70233 4.71802 4.78958 4.80800 4.86285 4.92635 4.95693 5.02836 5.06546 5.15405 5.41139 5.57075 5.63812 5.89541 5.97007 6.05284 6.14839 6.58247 6.81108 7.40207 7.81691 8.93780 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.019812 B = 0.005847 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.911498 B = 4787.872707 C = 5906.705358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.057 3.943 4 C 0.111 3.889 5 N -0.472 5.472 6 C 0.177 3.823 7 C -0.057 4.057 8 N -0.336 5.336 9 N -0.364 5.364 10 C 0.365 3.635 11 N -0.462 5.462 12 C 0.044 3.956 13 C 0.240 3.760 14 H -0.021 1.021 15 C -0.115 4.115 16 C -0.528 4.528 17 H 0.074 0.926 18 C 0.013 3.987 19 N -0.919 5.919 20 Si 0.971 3.029 21 H -0.266 1.266 22 H -0.287 1.287 23 H -0.268 1.268 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.104 0.896 27 H 0.044 0.956 28 H 0.076 0.924 29 H 0.131 0.869 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.014 0.986 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.029 0.971 38 H 0.065 0.935 39 H 0.012 0.988 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.782 -8.962 14.171 21.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.021 4.021 4 C -0.012 4.012 5 N -0.169 5.169 6 C -0.091 4.091 7 C -0.116 4.116 8 N -0.175 5.175 9 N -0.206 5.206 10 C 0.007 3.993 11 N -0.187 5.187 12 C -0.103 4.103 13 C 0.134 3.866 14 H -0.004 1.004 15 C -0.173 4.173 16 C -0.566 4.566 17 H 0.092 0.908 18 C -0.187 4.187 19 N -0.558 5.558 20 Si 0.795 3.205 21 H -0.191 1.191 22 H -0.213 1.213 23 H -0.193 1.193 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.123 0.877 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.149 0.851 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.032 0.968 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.048 0.952 38 H 0.084 0.916 39 H 0.031 0.969 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.836 -8.165 13.977 20.659 hybrid contribution -0.388 -0.135 -1.193 1.261 sum -13.224 -8.301 12.784 20.180 Atomic orbital electron populations 1.22995 0.78635 1.04342 1.01019 1.87792 1.22016 1.26439 1.95628 1.22684 0.92004 0.85782 1.01640 1.21730 0.92794 0.79547 1.07095 1.46279 1.48274 1.16575 1.05730 1.25805 1.01027 0.87014 0.95297 1.20460 1.04396 1.05621 0.81133 1.73877 1.19208 1.23154 1.01275 1.74670 1.24612 1.14651 1.06713 1.22898 0.98798 0.88459 0.89148 1.59061 1.07889 1.54754 0.96980 1.22414 0.86704 0.99100 1.02068 1.18953 0.86449 0.91268 0.89917 1.00355 1.21578 1.00087 0.98436 0.97190 1.21321 1.18704 1.22634 0.93962 0.90762 1.25808 0.94558 0.95200 1.03089 1.70072 1.20583 1.30213 1.34938 0.85419 0.78016 0.78630 0.78405 1.19112 1.21273 1.19281 0.92381 0.93780 0.87745 0.93823 0.90596 0.85121 0.88390 0.87957 0.87885 0.87717 0.96768 0.88851 0.90103 0.95207 0.91620 0.96916 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.40 -7.64 10.70 -148.98 -1.59 -9.24 16 3 C 0.06 1.10 6.25 71.98 0.45 1.55 16 4 C 0.11 2.55 6.22 86.38 0.54 3.08 16 5 N -0.47 -15.10 2.81 -514.86 -1.45 -16.55 16 6 C 0.18 5.44 8.07 137.64 1.11 6.55 16 7 C -0.06 -0.93 10.20 71.24 0.73 -0.20 16 8 N -0.34 -14.04 12.18 -49.54 -0.60 -14.64 16 9 N -0.36 -17.65 10.28 -58.01 -0.60 -18.25 16 10 C 0.36 15.62 5.91 260.11 1.54 17.16 16 11 N -0.46 -20.77 4.62 -711.02 -3.28 -24.06 16 12 C 0.04 1.70 9.36 127.69 1.19 2.90 16 13 C 0.24 13.00 1.74 44.17 0.08 13.08 16 14 H -0.02 -1.33 7.89 -2.39 -0.02 -1.35 16 15 C -0.11 -6.29 8.81 71.98 0.63 -5.65 16 16 C -0.53 -28.87 7.81 25.60 0.20 -28.67 16 17 H 0.07 3.84 6.45 -2.91 -0.02 3.82 16 18 C 0.01 0.72 5.30 84.66 0.45 1.17 16 19 N -0.92 -54.42 11.32 21.45 0.24 -54.18 16 20 Si 0.97 43.08 29.54 68.60 2.03 45.11 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 24 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 26 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.04 0.98 6.16 -2.39 -0.01 0.97 16 28 H 0.08 1.15 7.75 -2.39 -0.02 1.13 16 29 H 0.13 2.15 8.07 -2.39 -0.02 2.14 16 30 H 0.10 2.62 8.09 -2.39 -0.02 2.60 16 31 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.10 1.04 7.58 -2.38 -0.02 1.02 16 34 H 0.01 0.56 8.11 -2.39 -0.02 0.54 16 35 H 0.09 3.69 5.96 -2.39 -0.01 3.68 16 36 H 0.08 2.52 6.15 -2.39 -0.01 2.50 16 37 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 39 H 0.01 0.66 6.40 -2.39 -0.02 0.64 16 40 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -74.47 325.28 3.94 -70.53 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 1.03 Total: 8.73 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 8.16 Total: 12.54 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -5.68 Total: -127.67 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -1.59 Total: -9.24 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -74.47 3.94 -70.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812077238.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.945 kcal (2) G-P(sol) polarization free energy of solvation -74.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds