Wall clock time and date at job start Mon Mar 30 2020 01:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47537 * 2 1 4 4 C 1.52999 * 109.47358 * 239.99634 * 2 1 3 5 5 C 1.53008 * 109.47312 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.46629 * 60.00070 * 5 4 2 7 7 C 1.53003 * 109.47511 * 300.00149 * 6 5 4 8 8 H 1.08999 * 109.46817 * 299.99829 * 7 6 5 9 9 C 1.52995 * 109.46961 * 180.02562 * 7 6 5 10 10 C 1.53001 * 109.47598 * 64.99763 * 9 7 6 11 11 O 1.45199 * 109.47352 * 179.97438 * 10 9 7 12 12 C 1.34234 * 116.99947 * 180.02562 * 11 10 9 13 13 O 1.20830 * 119.99848 * 359.97438 * 12 11 10 14 14 C 1.50694 * 119.99881 * 180.02562 * 12 11 10 15 15 C 1.53001 * 109.47168 * 179.97438 * 14 12 11 16 16 C 1.50694 * 109.47168 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.52996 * 109.46841 * 60.00119 * 7 6 5 25 25 H 1.08996 * 109.47407 * 300.00142 * 1 2 3 26 26 H 1.09003 * 109.46962 * 59.99945 * 1 2 3 27 27 H 1.09003 * 109.46860 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47277 * 300.00147 * 4 2 1 29 29 H 1.08999 * 109.46943 * 60.00737 * 4 2 1 30 30 H 1.08994 * 109.46849 * 180.02562 * 5 4 2 31 31 H 1.09003 * 109.46862 * 300.00558 * 5 4 2 32 32 H 1.09000 * 109.46589 * 179.97438 * 6 5 4 33 33 H 1.09003 * 109.47100 * 60.00634 * 6 5 4 34 34 H 1.09004 * 109.47393 * 305.00027 * 9 7 6 35 35 H 1.09002 * 109.47078 * 184.99966 * 9 7 6 36 36 H 1.09004 * 109.46533 * 59.99737 * 10 9 7 37 37 H 1.09002 * 109.47072 * 300.00207 * 10 9 7 38 38 H 1.09002 * 109.47054 * 60.00063 * 14 12 11 39 39 H 1.08998 * 109.47224 * 299.99551 * 14 12 11 40 40 H 1.09007 * 109.46922 * 59.99702 * 15 14 12 41 41 H 1.09003 * 109.46836 * 300.00457 * 15 14 12 42 42 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 43 43 H 1.08995 * 109.47161 * 60.00299 * 24 7 6 44 44 H 1.09004 * 109.46790 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5701 -0.7219 -1.2488 6 6 4.0795 -1.4434 0.0005 7 6 3.5694 -0.7222 1.2497 8 1 3.9332 0.3053 1.2500 9 6 4.0793 -1.4435 2.4989 10 6 5.6042 -1.3356 2.5635 11 8 6.0880 -2.0197 3.7494 12 6 7.4144 -2.0177 3.9555 13 8 8.1469 -1.4631 3.1707 14 6 7.9900 -2.7080 5.1651 15 6 9.5126 -2.5582 5.1614 16 6 10.0881 -3.2481 6.3713 17 1 9.4335 -3.7441 7.0725 18 6 11.4506 -3.2459 6.5831 19 7 12.2479 -2.6422 5.7289 20 14 12.1639 -4.1004 8.0832 21 1 13.6418 -3.9551 8.0796 22 1 11.6085 -3.4841 9.3148 23 1 11.8087 -5.5418 8.0475 24 6 2.0394 -0.7217 1.2493 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6767 -1.7489 -1.2492 29 1 1.6768 -0.2075 -2.1392 30 1 3.9334 -1.2353 -2.1390 31 1 3.9338 0.3057 -1.2486 32 1 5.1695 -1.4442 0.0005 33 1 3.7158 -2.4710 0.0002 34 1 3.7910 -2.4938 2.4553 35 1 3.6447 -0.9839 3.3867 36 1 5.8925 -0.2853 2.6072 37 1 6.0388 -1.7951 1.6758 38 1 7.7293 -3.7661 5.1379 39 1 7.5823 -2.2565 6.0695 40 1 9.7737 -1.5002 5.1883 41 1 9.9200 -3.0100 4.2569 42 1 13.2064 -2.6404 5.8782 43 1 1.6758 -1.7491 1.2491 44 1 1.6761 -0.2074 2.1390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:01 Heat of formation + Delta-G solvation = -145.750352 kcal Electronic energy + Delta-G solvation = -20089.628542 eV Core-core repulsion = 17004.719085 eV Total energy + Delta-G solvation = -3084.909457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.98244 -39.25700 -36.27353 -34.16907 -33.55836 -32.14438 -31.13109 -28.98784 -26.64666 -26.00177 -23.70006 -22.31384 -21.93073 -20.40474 -20.07603 -19.66186 -17.28866 -16.33089 -16.29079 -15.52123 -15.43310 -14.90008 -14.69689 -14.45840 -14.23036 -13.99060 -13.57181 -12.86870 -12.71749 -12.64280 -12.34236 -12.18732 -12.12512 -11.83031 -11.67511 -11.33118 -11.24840 -11.13437 -11.01878 -10.92771 -10.68272 -10.66036 -10.39577 -10.28668 -10.08655 -9.99897 -9.87483 -9.50310 -9.17529 -8.36361 -6.00308 -4.05216 2.87609 3.14558 3.33658 3.38199 3.40556 4.34085 4.37960 4.43131 4.45983 4.73699 4.81776 4.98878 5.03913 5.08380 5.17843 5.20613 5.34212 5.34853 5.37033 5.38924 5.41183 5.51634 5.53435 5.65553 5.71061 5.75989 5.79815 5.90006 5.94588 5.99580 6.00725 6.06887 6.13578 6.15247 6.23158 6.26905 6.69763 6.99479 7.67607 7.75172 7.99457 8.28459 8.45437 9.01780 9.58606 11.10691 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.058650 B = 0.002521 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.290700 B =11105.784549 C =11408.758649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 H 0.069 0.931 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.121 4.121 7 C -0.084 4.084 8 H 0.073 0.927 9 C -0.114 4.114 10 C 0.063 3.937 11 O -0.368 6.368 12 C 0.456 3.544 13 O -0.507 6.507 14 C -0.104 4.104 15 C 0.033 3.967 16 C -0.529 4.529 17 H 0.058 0.942 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.897 3.103 21 H -0.287 1.287 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.107 4.107 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.262 0.738 43 H 0.064 0.936 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.298 4.112 -11.980 26.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.087 0.913 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.158 4.158 7 C -0.103 4.103 8 H 0.091 0.909 9 C -0.151 4.151 10 C -0.012 4.012 11 O -0.286 6.286 12 C 0.299 3.701 13 O -0.394 6.394 14 C -0.141 4.141 15 C -0.004 4.004 16 C -0.567 4.567 17 H 0.076 0.924 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.724 3.276 21 H -0.213 1.213 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.144 4.144 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.901 4.335 -12.286 26.347 hybrid contribution 0.540 -0.326 0.628 0.890 sum -22.361 4.009 -11.658 25.534 Atomic orbital electron populations 1.21832 0.95351 1.01757 1.01549 1.21142 0.95280 0.99694 0.95044 0.91268 1.21603 0.95620 1.00612 0.97321 1.21536 0.95516 1.00860 0.97866 1.21700 1.00771 0.99456 0.93904 1.21095 0.95525 0.99820 0.93827 0.90889 1.21598 0.93097 1.02028 0.98382 1.22999 0.94426 0.97067 0.86664 1.86542 1.26510 1.70708 1.44880 1.24746 0.79352 0.77838 0.88130 1.90629 1.60169 1.42128 1.46482 1.21753 1.00758 1.00063 0.91551 1.19010 0.85184 0.98432 0.97774 1.21127 0.92100 1.35176 1.08299 0.92354 1.25031 0.97205 0.95492 0.96652 1.69987 1.03939 1.42956 1.35934 0.86592 0.77893 0.80043 0.83063 1.21269 1.20161 1.20166 1.21618 0.94429 1.00893 0.97485 0.92713 0.92846 0.92734 0.92027 0.92258 0.92005 0.91999 0.91558 0.91739 0.90844 0.90827 0.91751 0.91439 0.89009 0.89010 0.95624 0.95620 0.92800 0.91766 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.19 37.16 0.34 -0.55 16 2 C -0.09 -0.64 2.72 -90.62 -0.25 -0.89 16 3 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 4 C -0.11 -0.79 5.20 -26.73 -0.14 -0.93 16 5 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 6 C -0.12 -1.05 4.96 -26.73 -0.13 -1.18 16 7 C -0.08 -0.73 2.19 -90.62 -0.20 -0.93 16 8 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 9 C -0.11 -1.17 5.06 -26.73 -0.14 -1.31 16 10 C 0.06 0.86 5.22 37.16 0.19 1.06 16 11 O -0.37 -6.29 10.22 -39.27 -0.40 -6.69 16 12 C 0.46 9.28 7.96 36.00 0.29 9.56 16 13 O -0.51 -11.90 15.73 -18.75 -0.30 -12.19 16 14 C -0.10 -2.17 5.75 -27.89 -0.16 -2.33 16 15 C 0.03 0.89 4.26 -27.89 -0.12 0.77 16 16 C -0.53 -14.94 9.11 -34.44 -0.31 -15.26 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -27.25 13.29 55.43 0.74 -26.51 16 20 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C -0.11 -0.80 4.48 -26.73 -0.12 -0.92 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.64 6.56 -51.93 -0.34 0.30 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 37 H 0.07 0.94 6.56 -51.93 -0.34 0.60 16 38 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 39 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 40 H 0.03 0.74 8.10 -51.92 -0.42 0.32 16 41 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 351.37 15.07 5.30 5.30 Total: -1.00 -31.68 351.37 -8.93 -40.61 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -8.25 Total: -4.69 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -1.00 Total: -12.39 kcal Atomic # 7 Polarization: -27.25 SS G_CDS: 0.74 Total: -26.51 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.70 Total: -18.88 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.68 -8.93 -40.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.139 kcal (2) G-P(sol) polarization free energy of solvation -31.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds