Wall clock time and date at job start Mon Mar 30 2020 01:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47537 * 2 1 4 4 C 1.52999 * 109.47358 * 239.99634 * 2 1 3 5 5 C 1.53008 * 109.47312 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.46629 * 60.00070 * 5 4 2 7 7 C 1.53003 * 109.47511 * 300.00149 * 6 5 4 8 8 H 1.08999 * 109.46817 * 299.99829 * 7 6 5 9 9 C 1.52995 * 109.46961 * 180.02562 * 7 6 5 10 10 C 1.53001 * 109.47598 * 64.99763 * 9 7 6 11 11 O 1.45199 * 109.47352 * 179.97438 * 10 9 7 12 12 C 1.34234 * 116.99947 * 180.02562 * 11 10 9 13 13 O 1.20830 * 119.99848 * 359.97438 * 12 11 10 14 14 C 1.50694 * 119.99881 * 180.02562 * 12 11 10 15 15 C 1.53001 * 109.47168 * 179.97438 * 14 12 11 16 16 C 1.50694 * 109.47168 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.52996 * 109.46841 * 60.00119 * 7 6 5 25 25 H 1.08996 * 109.47407 * 300.00142 * 1 2 3 26 26 H 1.09003 * 109.46962 * 59.99945 * 1 2 3 27 27 H 1.09003 * 109.46860 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47277 * 300.00147 * 4 2 1 29 29 H 1.08999 * 109.46943 * 60.00737 * 4 2 1 30 30 H 1.08994 * 109.46849 * 180.02562 * 5 4 2 31 31 H 1.09003 * 109.46862 * 300.00558 * 5 4 2 32 32 H 1.09000 * 109.46589 * 179.97438 * 6 5 4 33 33 H 1.09003 * 109.47100 * 60.00634 * 6 5 4 34 34 H 1.09004 * 109.47393 * 305.00027 * 9 7 6 35 35 H 1.09002 * 109.47078 * 184.99966 * 9 7 6 36 36 H 1.09004 * 109.46533 * 59.99737 * 10 9 7 37 37 H 1.09002 * 109.47072 * 300.00207 * 10 9 7 38 38 H 1.09002 * 109.47054 * 60.00063 * 14 12 11 39 39 H 1.08998 * 109.47224 * 299.99551 * 14 12 11 40 40 H 1.09007 * 109.46922 * 59.99702 * 15 14 12 41 41 H 1.09003 * 109.46836 * 300.00457 * 15 14 12 42 42 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 43 43 H 1.08995 * 109.47161 * 60.00299 * 24 7 6 44 44 H 1.09004 * 109.46790 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5701 -0.7219 -1.2488 6 6 4.0795 -1.4434 0.0005 7 6 3.5694 -0.7222 1.2497 8 1 3.9332 0.3053 1.2500 9 6 4.0793 -1.4435 2.4989 10 6 5.6042 -1.3356 2.5635 11 8 6.0880 -2.0197 3.7494 12 6 7.4144 -2.0177 3.9555 13 8 8.1469 -1.4631 3.1707 14 6 7.9900 -2.7080 5.1651 15 6 9.5126 -2.5582 5.1614 16 6 10.0881 -3.2481 6.3713 17 1 9.4335 -3.7441 7.0725 18 6 11.4506 -3.2459 6.5831 19 7 12.2479 -2.6422 5.7289 20 14 12.1639 -4.1004 8.0832 21 1 13.6418 -3.9551 8.0796 22 1 11.6085 -3.4841 9.3148 23 1 11.8087 -5.5418 8.0475 24 6 2.0394 -0.7217 1.2493 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6767 -1.7489 -1.2492 29 1 1.6768 -0.2075 -2.1392 30 1 3.9334 -1.2353 -2.1390 31 1 3.9338 0.3057 -1.2486 32 1 5.1695 -1.4442 0.0005 33 1 3.7158 -2.4710 0.0002 34 1 3.7910 -2.4938 2.4553 35 1 3.6447 -0.9839 3.3867 36 1 5.8925 -0.2853 2.6072 37 1 6.0388 -1.7951 1.6758 38 1 7.7293 -3.7661 5.1379 39 1 7.5823 -2.2565 6.0695 40 1 9.7737 -1.5002 5.1883 41 1 9.9200 -3.0100 4.2569 42 1 13.2064 -2.6404 5.8782 43 1 1.6758 -1.7491 1.2491 44 1 1.6761 -0.2074 2.1390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812615737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:01 Heat of formation + Delta-G solvation = -161.294444 kcal Electronic energy + Delta-G solvation = -20090.302585 eV Core-core repulsion = 17004.719085 eV Total energy + Delta-G solvation = -3085.583499 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.49270 -40.00185 -37.75395 -35.65146 -34.99260 -33.16299 -32.74911 -29.96548 -27.94812 -27.18901 -24.94942 -23.64388 -22.94065 -21.51585 -21.02770 -20.65440 -19.06897 -18.14330 -17.74739 -16.98965 -16.48768 -16.14884 -15.96645 -15.43990 -15.12241 -14.76034 -14.66315 -14.32963 -14.18149 -13.92214 -13.36652 -13.24178 -13.09627 -12.86071 -12.79261 -12.65519 -12.57563 -12.53034 -12.04303 -11.99954 -11.88189 -11.76417 -11.73614 -11.48406 -11.44957 -11.31719 -11.28327 -10.87536 -10.81113 -10.57250 -8.20106 -6.34216 1.23338 1.43208 1.47795 1.55302 1.73086 2.43375 3.13399 3.60396 3.70179 3.78172 3.93408 3.98576 4.11006 4.21647 4.29022 4.37620 4.39508 4.44858 4.51109 4.55916 4.60574 4.64525 4.76573 4.83661 4.88118 4.89448 4.99272 5.04577 5.07827 5.13673 5.19880 5.30281 5.33093 5.39850 5.43711 5.46535 5.48157 5.48595 5.54287 5.64507 5.80039 6.12755 6.78972 6.86310 7.36002 8.92405 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.058650 B = 0.002521 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.290700 B =11105.784549 C =11408.758649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.066 0.934 4 C -0.111 4.111 5 C -0.120 4.120 6 C -0.122 4.122 7 C -0.080 4.080 8 H 0.070 0.930 9 C -0.103 4.103 10 C 0.056 3.944 11 O -0.358 6.358 12 C 0.464 3.536 13 O -0.547 6.547 14 C -0.095 4.095 15 C 0.038 3.962 16 C -0.545 4.545 17 H 0.078 0.922 18 C -0.006 4.006 19 N -0.936 5.936 20 Si 0.976 3.024 21 H -0.288 1.288 22 H -0.262 1.262 23 H -0.262 1.262 24 C -0.103 4.103 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.116 0.884 39 H 0.116 0.884 40 H -0.011 1.011 41 H -0.011 1.011 42 H 0.264 0.736 43 H 0.067 0.933 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.321 3.279 -10.928 27.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.084 0.916 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.159 4.159 7 C -0.098 4.098 8 H 0.088 0.912 9 C -0.141 4.141 10 C -0.017 4.017 11 O -0.275 6.275 12 C 0.309 3.691 13 O -0.437 6.437 14 C -0.132 4.132 15 C 0.001 3.999 16 C -0.583 4.583 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.576 5.576 20 Si 0.800 3.200 21 H -0.213 1.213 22 H -0.187 1.187 23 H -0.187 1.187 24 C -0.140 4.140 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.007 0.993 41 H 0.007 0.993 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -24.974 3.496 -11.229 27.605 hybrid contribution 1.121 -0.028 0.219 1.143 sum -23.853 3.468 -11.010 26.499 Atomic orbital electron populations 1.21809 0.94520 1.02008 1.01936 1.21135 0.95943 0.99380 0.94648 0.91574 1.21587 0.94763 1.00836 0.97710 1.21531 0.96289 1.00532 0.97380 1.21699 0.99836 0.99823 0.94584 1.21067 0.96560 0.99311 0.92870 0.91201 1.21596 0.90083 1.02813 0.99590 1.23345 0.96758 0.96450 0.85183 1.86509 1.24245 1.70584 1.46165 1.24532 0.80237 0.76945 0.87398 1.90622 1.61379 1.43918 1.47785 1.21519 0.96724 1.01967 0.92981 1.18795 0.89432 0.95607 0.96065 1.21620 0.92822 1.35037 1.08813 0.90369 1.26134 0.97842 0.96178 1.00187 1.70160 1.04319 1.44706 1.38417 0.85337 0.76711 0.79230 0.78758 1.21327 1.18676 1.18689 1.21589 0.93086 1.01281 0.98081 0.92468 0.92380 0.92536 0.91866 0.91561 0.91792 0.92283 0.93096 0.91498 0.90221 0.90021 0.92142 0.91785 0.86580 0.86570 0.99279 0.99274 0.92739 0.91458 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.19 71.98 0.66 -0.81 16 2 C -0.09 -1.11 2.72 -10.79 -0.03 -1.14 16 3 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.11 -1.36 5.20 30.60 0.16 -1.20 16 5 C -0.12 -1.73 5.92 30.60 0.18 -1.55 16 6 C -0.12 -2.04 4.96 30.60 0.15 -1.88 16 7 C -0.08 -1.28 2.19 -10.80 -0.02 -1.30 16 8 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 9 C -0.10 -1.97 5.06 30.59 0.15 -1.82 16 10 C 0.06 1.52 5.22 71.98 0.38 1.90 16 11 O -0.36 -11.85 10.22 -51.46 -0.53 -12.37 16 12 C 0.46 18.88 7.96 71.23 0.57 19.45 16 13 O -0.55 -26.46 15.73 21.95 0.35 -26.12 16 14 C -0.09 -3.89 5.75 29.85 0.17 -3.72 16 15 C 0.04 2.11 4.26 29.85 0.13 2.23 16 16 C -0.55 -30.74 9.11 25.60 0.23 -30.50 16 17 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 18 C -0.01 -0.33 5.46 84.66 0.46 0.14 16 19 N -0.94 -58.74 13.29 21.45 0.28 -58.46 16 20 Si 0.98 43.92 29.54 68.60 2.03 45.95 16 21 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 22 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 23 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 24 C -0.10 -1.34 4.48 30.59 0.14 -1.20 16 25 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.05 1.00 6.56 -2.39 -0.02 0.98 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 1.70 8.13 -2.38 -0.02 1.68 16 37 H 0.06 1.80 6.56 -2.39 -0.02 1.78 16 38 H 0.12 4.23 8.14 -2.39 -0.02 4.21 16 39 H 0.12 4.23 8.14 -2.39 -0.02 4.21 16 40 H -0.01 -0.69 8.10 -2.38 -0.02 -0.71 16 41 H -0.01 -0.69 8.10 -2.39 -0.02 -0.71 16 42 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -69.30 351.37 6.39 -62.91 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.93 Total: 9.49 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 3.33 Total: -21.40 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 0.28 Total: -58.46 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -0.18 Total: -38.49 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -69.30 6.39 -62.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.383 kcal (2) G-P(sol) polarization free energy of solvation -69.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds