Wall clock time and date at job start Mon Mar 30 2020 01:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47704 * 2 1 4 4 C 1.53011 * 109.46793 * 120.00241 * 2 1 3 5 5 C 1.53004 * 109.46909 * 59.99839 * 4 2 1 6 6 C 1.53004 * 109.47176 * 60.00175 * 5 4 2 7 7 C 1.52997 * 109.47023 * 299.99596 * 6 5 4 8 8 H 1.09007 * 109.47522 * 300.00217 * 7 6 5 9 9 C 1.52999 * 109.47230 * 180.02562 * 7 6 5 10 10 C 1.52994 * 109.47236 * 65.00035 * 9 7 6 11 11 O 1.45202 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.34230 * 116.99836 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99930 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00262 * 180.27336 * 12 11 10 15 15 C 1.52996 * 109.47491 * 179.72204 * 14 12 11 16 16 C 1.50702 * 109.47159 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99766 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99802 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99900 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99548 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47467 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46715 * 120.00321 * 20 18 16 23 23 H 1.48498 * 109.46991 * 239.99741 * 20 18 16 24 24 C 1.52999 * 109.47088 * 239.99778 * 2 1 3 25 25 H 1.08999 * 109.47000 * 300.00330 * 1 2 3 26 26 H 1.08998 * 109.46401 * 59.99804 * 1 2 3 27 27 H 1.08997 * 109.47316 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47004 * 299.99768 * 4 2 1 29 29 H 1.08999 * 109.47022 * 179.97438 * 4 2 1 30 30 H 1.08999 * 109.47234 * 299.99858 * 5 4 2 31 31 H 1.09002 * 109.46704 * 179.97438 * 5 4 2 32 32 H 1.08995 * 109.46714 * 179.97438 * 6 5 4 33 33 H 1.08999 * 109.47298 * 59.99722 * 6 5 4 34 34 H 1.08997 * 109.46515 * 304.99645 * 9 7 6 35 35 H 1.09002 * 109.46973 * 185.00639 * 9 7 6 36 36 H 1.08998 * 109.47242 * 60.00031 * 10 9 7 37 37 H 1.09004 * 109.46797 * 299.99847 * 10 9 7 38 38 H 1.09004 * 109.46801 * 299.72165 * 14 12 11 39 39 H 1.09000 * 109.47461 * 59.71633 * 14 12 11 40 40 H 1.09004 * 109.47066 * 299.99799 * 15 14 12 41 41 H 1.08994 * 109.47405 * 59.99969 * 15 14 12 42 42 H 0.96998 * 119.99342 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.47114 * 180.02562 * 24 2 1 44 44 H 1.09002 * 109.46803 * 60.00217 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7214 1.2493 5 6 1.5299 -2.1639 1.2492 6 6 2.0399 -2.8851 -0.0001 7 6 1.5300 -2.1638 -1.2493 8 1 0.4399 -2.1637 -1.2493 9 6 2.0395 -2.8854 -2.4985 10 6 1.4289 -4.2867 -2.5627 11 8 1.9129 -4.9717 -3.7480 12 6 1.4684 -6.2214 -3.9538 13 8 0.7007 -6.7265 -3.1693 14 6 1.9321 -6.9971 -5.1598 15 6 1.2866 -8.3842 -5.1532 16 6 1.7509 -9.1601 -6.3588 17 1 2.4373 -8.7087 -7.0599 18 6 1.2992 -10.4461 -6.5668 19 7 0.4637 -10.9958 -5.7128 20 14 1.8742 -11.4075 -8.0617 21 1 2.8053 -10.5707 -8.8604 22 1 2.5736 -12.6402 -7.6183 23 1 0.7011 -11.7763 -8.8942 24 6 2.0400 -0.7213 -1.2492 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6767 -0.2076 2.1392 29 1 3.1300 -0.7218 1.2491 30 1 0.4399 -2.1638 1.2492 31 1 1.8935 -2.6779 2.1390 32 1 1.6769 -3.9128 0.0002 33 1 3.1299 -2.8852 0.0000 34 1 3.1257 -2.9639 -2.4550 35 1 1.7512 -2.3223 -3.3862 36 1 0.3426 -4.2081 -2.6062 37 1 1.7173 -4.8497 -1.6750 38 1 1.6427 -6.4660 -6.0666 39 1 3.0168 -7.1009 -5.1301 40 1 1.5760 -8.9153 -4.2463 41 1 0.2021 -8.2804 -5.1830 42 1 0.1458 -11.9004 -5.8594 43 1 3.1300 -0.7217 -1.2490 44 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:07 Heat of formation + Delta-G solvation = -141.402352 kcal Electronic energy + Delta-G solvation = -20267.188482 eV Core-core repulsion = 17182.467569 eV Total energy + Delta-G solvation = -3084.720913 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.04113 -39.47520 -36.27570 -33.98879 -33.55895 -31.78267 -31.13240 -28.89138 -27.04074 -26.00345 -23.76874 -22.63175 -21.93041 -20.84847 -19.72357 -18.89615 -17.30372 -16.34218 -16.30206 -15.76819 -15.38957 -15.02900 -14.61313 -14.45542 -14.21816 -14.10062 -13.33524 -13.01420 -12.89772 -12.46611 -12.33756 -12.13974 -12.08304 -11.80731 -11.64641 -11.38724 -11.27931 -11.12487 -11.06728 -10.96562 -10.62238 -10.51764 -10.29910 -10.26894 -10.06570 -9.99449 -9.87159 -9.50841 -9.14877 -8.37294 -6.00874 -4.05552 2.87632 3.14952 3.31262 3.38664 3.42552 4.36367 4.39888 4.42417 4.46021 4.77749 4.81896 4.98720 5.08484 5.11422 5.12933 5.18460 5.34132 5.34602 5.36653 5.41393 5.42217 5.56349 5.56845 5.69526 5.71806 5.75670 5.80401 5.88729 5.96747 6.01239 6.02609 6.07539 6.14865 6.17168 6.23258 6.29494 6.69806 6.99533 7.68007 7.75026 7.99226 8.28296 8.45441 9.01928 9.58454 11.10248 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.055381 B = 0.002600 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.469228 B =10768.103412 C =10943.978524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.092 4.092 3 H 0.067 0.933 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.120 4.120 7 C -0.086 4.086 8 H 0.076 0.924 9 C -0.114 4.114 10 C 0.063 3.937 11 O -0.368 6.368 12 C 0.455 3.545 13 O -0.507 6.507 14 C -0.103 4.103 15 C 0.032 3.968 16 C -0.527 4.527 17 H 0.059 0.941 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.896 3.104 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.107 4.107 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.261 0.739 43 H 0.063 0.937 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.234 22.945 11.944 26.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.110 4.110 3 H 0.086 0.914 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.158 4.158 7 C -0.104 4.104 8 H 0.094 0.906 9 C -0.151 4.151 10 C -0.011 4.011 11 O -0.286 6.286 12 C 0.299 3.701 13 O -0.394 6.394 14 C -0.141 4.141 15 C -0.005 4.005 16 C -0.565 4.565 17 H 0.077 0.923 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.723 3.277 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.145 4.145 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.894 22.650 12.246 25.911 hybrid contribution 0.134 -0.624 -0.614 0.885 sum 3.028 22.026 11.632 25.092 Atomic orbital electron populations 1.21957 0.95350 1.02282 1.01379 1.21095 0.95974 0.98929 0.95027 0.91434 1.21569 1.00494 0.95777 0.97351 1.21575 1.01080 0.95472 0.97805 1.21691 1.00976 0.99190 0.93929 1.21136 1.00881 0.94619 0.93772 0.90575 1.21604 1.01482 0.93625 0.98431 1.22997 0.98910 0.92568 0.86666 1.86542 1.67540 1.29613 1.44933 1.24748 0.78095 0.79154 0.88084 1.90629 1.33347 1.69030 1.46403 1.21750 1.02725 0.97993 0.91638 1.19021 0.96513 0.87126 0.97824 1.21203 1.27953 0.98905 1.08472 0.92253 1.25033 0.95037 0.97708 0.96638 1.70008 1.32097 1.14802 1.35915 0.86484 0.78537 0.79935 0.82716 1.19647 1.20974 1.20968 1.21585 1.00673 0.94700 0.97517 0.92992 0.92827 0.91877 0.92258 0.92075 0.91660 0.92124 0.91594 0.91777 0.90872 0.90852 0.91766 0.91454 0.89021 0.89008 0.95607 0.95606 0.92915 0.91812 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.50 37.16 0.32 -0.73 16 2 C -0.09 -0.63 3.20 -90.61 -0.29 -0.92 16 3 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.11 -0.79 5.45 -26.72 -0.15 -0.93 16 5 C -0.12 -0.93 5.65 -26.73 -0.15 -1.08 16 6 C -0.12 -1.05 4.96 -26.73 -0.13 -1.18 16 7 C -0.09 -0.74 1.91 -90.62 -0.17 -0.91 16 8 H 0.08 0.68 6.43 -51.93 -0.33 0.34 16 9 C -0.11 -1.17 5.06 -26.73 -0.14 -1.31 16 10 C 0.06 0.87 5.22 37.15 0.19 1.06 16 11 O -0.37 -6.28 10.22 -39.26 -0.40 -6.68 16 12 C 0.46 9.26 7.96 36.00 0.29 9.55 16 13 O -0.51 -11.88 15.73 -18.76 -0.30 -12.17 16 14 C -0.10 -2.16 5.75 -27.89 -0.16 -2.32 16 15 C 0.03 0.87 4.26 -27.88 -0.12 0.75 16 16 C -0.53 -14.88 9.11 -34.44 -0.31 -15.20 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 20 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C -0.11 -0.80 4.73 -26.73 -0.13 -0.92 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.46 4.81 -51.93 -0.25 0.21 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.64 6.56 -51.93 -0.34 0.30 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 37 H 0.07 0.94 6.56 -51.93 -0.34 0.60 16 38 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 39 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 40 H 0.03 0.75 8.10 -51.93 -0.42 0.32 16 41 H 0.03 0.75 8.10 -51.93 -0.42 0.32 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 344.34 15.07 5.19 5.19 Total: -1.00 -31.72 344.34 -8.74 -40.46 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -7.90 Total: -4.27 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -1.05 Total: -12.58 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.74 Total: -26.50 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.70 Total: -18.85 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.72 -8.74 -40.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.944 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds