Wall clock time and date at job start Mon Mar 30 2020 01:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47704 * 2 1 4 4 C 1.53011 * 109.46793 * 120.00241 * 2 1 3 5 5 C 1.53004 * 109.46909 * 59.99839 * 4 2 1 6 6 C 1.53004 * 109.47176 * 60.00175 * 5 4 2 7 7 C 1.52997 * 109.47023 * 299.99596 * 6 5 4 8 8 H 1.09007 * 109.47522 * 300.00217 * 7 6 5 9 9 C 1.52999 * 109.47230 * 180.02562 * 7 6 5 10 10 C 1.52994 * 109.47236 * 65.00035 * 9 7 6 11 11 O 1.45202 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.34230 * 116.99836 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99930 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00262 * 180.27336 * 12 11 10 15 15 C 1.52996 * 109.47491 * 179.72204 * 14 12 11 16 16 C 1.50702 * 109.47159 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99766 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99802 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99900 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99548 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47467 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46715 * 120.00321 * 20 18 16 23 23 H 1.48498 * 109.46991 * 239.99741 * 20 18 16 24 24 C 1.52999 * 109.47088 * 239.99778 * 2 1 3 25 25 H 1.08999 * 109.47000 * 300.00330 * 1 2 3 26 26 H 1.08998 * 109.46401 * 59.99804 * 1 2 3 27 27 H 1.08997 * 109.47316 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47004 * 299.99768 * 4 2 1 29 29 H 1.08999 * 109.47022 * 179.97438 * 4 2 1 30 30 H 1.08999 * 109.47234 * 299.99858 * 5 4 2 31 31 H 1.09002 * 109.46704 * 179.97438 * 5 4 2 32 32 H 1.08995 * 109.46714 * 179.97438 * 6 5 4 33 33 H 1.08999 * 109.47298 * 59.99722 * 6 5 4 34 34 H 1.08997 * 109.46515 * 304.99645 * 9 7 6 35 35 H 1.09002 * 109.46973 * 185.00639 * 9 7 6 36 36 H 1.08998 * 109.47242 * 60.00031 * 10 9 7 37 37 H 1.09004 * 109.46797 * 299.99847 * 10 9 7 38 38 H 1.09004 * 109.46801 * 299.72165 * 14 12 11 39 39 H 1.09000 * 109.47461 * 59.71633 * 14 12 11 40 40 H 1.09004 * 109.47066 * 299.99799 * 15 14 12 41 41 H 1.08994 * 109.47405 * 59.99969 * 15 14 12 42 42 H 0.96998 * 119.99342 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.47114 * 180.02562 * 24 2 1 44 44 H 1.09002 * 109.46803 * 60.00217 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7214 1.2493 5 6 1.5299 -2.1639 1.2492 6 6 2.0399 -2.8851 -0.0001 7 6 1.5300 -2.1638 -1.2493 8 1 0.4399 -2.1637 -1.2493 9 6 2.0395 -2.8854 -2.4985 10 6 1.4289 -4.2867 -2.5627 11 8 1.9129 -4.9717 -3.7480 12 6 1.4684 -6.2214 -3.9538 13 8 0.7007 -6.7265 -3.1693 14 6 1.9321 -6.9971 -5.1598 15 6 1.2866 -8.3842 -5.1532 16 6 1.7509 -9.1601 -6.3588 17 1 2.4373 -8.7087 -7.0599 18 6 1.2992 -10.4461 -6.5668 19 7 0.4637 -10.9958 -5.7128 20 14 1.8742 -11.4075 -8.0617 21 1 2.8053 -10.5707 -8.8604 22 1 2.5736 -12.6402 -7.6183 23 1 0.7011 -11.7763 -8.8942 24 6 2.0400 -0.7213 -1.2492 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6767 -0.2076 2.1392 29 1 3.1300 -0.7218 1.2491 30 1 0.4399 -2.1638 1.2492 31 1 1.8935 -2.6779 2.1390 32 1 1.6769 -3.9128 0.0002 33 1 3.1299 -2.8852 0.0000 34 1 3.1257 -2.9639 -2.4550 35 1 1.7512 -2.3223 -3.3862 36 1 0.3426 -4.2081 -2.6062 37 1 1.7173 -4.8497 -1.6750 38 1 1.6427 -6.4660 -6.0666 39 1 3.0168 -7.1009 -5.1301 40 1 1.5760 -8.9153 -4.2463 41 1 0.2021 -8.2804 -5.1830 42 1 0.1458 -11.9004 -5.8594 43 1 3.1300 -0.7217 -1.2490 44 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812615739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:06 Heat of formation + Delta-G solvation = -157.200050 kcal Electronic energy + Delta-G solvation = -20267.873522 eV Core-core repulsion = 17182.467569 eV Total energy + Delta-G solvation = -3085.405953 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.49696 -40.25939 -37.76405 -35.65297 -34.84856 -33.13784 -32.39461 -29.88189 -27.94122 -27.58789 -24.97530 -23.75750 -23.15804 -21.71028 -21.34282 -19.51625 -19.06799 -18.14249 -17.73924 -16.97592 -16.53198 -16.40035 -15.97579 -15.33002 -15.28031 -14.80844 -14.55209 -14.36199 -14.20007 -13.77745 -13.55170 -13.31962 -12.97495 -12.91312 -12.86476 -12.62884 -12.47582 -12.44961 -12.13217 -12.01985 -11.89238 -11.79037 -11.75130 -11.47918 -11.43000 -11.27380 -11.08278 -10.85656 -10.72830 -10.59305 -8.20637 -6.34444 1.23538 1.43225 1.44406 1.57875 1.73506 2.43026 3.13231 3.62817 3.71886 3.77445 3.94309 3.98910 4.09832 4.27298 4.29898 4.39231 4.41869 4.45046 4.50069 4.53614 4.58195 4.66407 4.70113 4.86264 4.88595 4.91219 5.00013 5.06888 5.09676 5.14845 5.18215 5.30036 5.33598 5.40114 5.44075 5.48149 5.49234 5.52405 5.54401 5.66891 5.80200 6.12704 6.79262 6.86520 7.35890 8.92381 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.055381 B = 0.002600 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.469228 B =10768.103412 C =10943.978524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.091 4.091 3 H 0.077 0.923 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.121 4.121 7 C -0.081 4.081 8 H 0.073 0.927 9 C -0.104 4.104 10 C 0.056 3.944 11 O -0.358 6.358 12 C 0.463 3.537 13 O -0.547 6.547 14 C -0.094 4.094 15 C 0.037 3.963 16 C -0.543 4.543 17 H 0.078 0.922 18 C -0.006 4.006 19 N -0.937 5.937 20 Si 0.976 3.024 21 H -0.253 1.253 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.104 4.104 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.116 0.884 39 H 0.116 0.884 40 H -0.011 1.011 41 H -0.011 1.011 42 H 0.264 0.736 43 H 0.067 0.933 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.686 24.609 10.911 27.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.109 4.109 3 H 0.095 0.905 4 C -0.150 4.150 5 C -0.159 4.159 6 C -0.159 4.159 7 C -0.099 4.099 8 H 0.091 0.909 9 C -0.141 4.141 10 C -0.017 4.017 11 O -0.275 6.275 12 C 0.309 3.691 13 O -0.437 6.437 14 C -0.132 4.132 15 C 0.000 4.000 16 C -0.580 4.580 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.577 5.577 20 Si 0.799 3.201 21 H -0.176 1.176 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.142 4.142 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.008 0.992 41 H 0.008 0.992 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.369 24.358 11.209 27.167 hybrid contribution -0.342 -1.083 -0.212 1.156 sum 4.027 23.275 10.997 26.055 Atomic orbital electron populations 1.21955 0.95448 1.01837 1.01746 1.21101 0.95865 0.99326 0.94597 0.90455 1.21560 1.00630 0.95038 0.97749 1.21567 1.00930 0.96115 0.97263 1.21688 1.01082 0.98482 0.94635 1.21105 1.00691 0.95354 0.92771 0.90898 1.21605 1.01595 0.91281 0.99658 1.23341 0.99107 0.94084 0.85177 1.86509 1.66889 1.27884 1.46212 1.24535 0.77267 0.79982 0.87354 1.90623 1.35206 1.70157 1.47705 1.21516 1.03528 0.95056 0.93069 1.18806 0.94670 0.90407 0.96095 1.21677 1.28014 0.99387 1.08956 0.90382 1.26128 0.94980 0.99128 1.00122 1.70171 1.33698 1.15396 1.38393 0.85241 0.78269 0.78199 0.78350 1.17636 1.20603 1.20588 1.21565 1.00901 0.93563 0.98128 0.92492 0.92649 0.92715 0.91559 0.91814 0.91927 0.92001 0.93188 0.91548 0.90262 0.90062 0.92156 0.91824 0.86586 0.86590 0.99247 0.99235 0.92745 0.91398 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.50 71.98 0.61 -1.24 16 2 C -0.09 -1.06 3.20 -10.79 -0.03 -1.09 16 3 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 4 C -0.11 -1.34 5.45 30.60 0.17 -1.18 16 5 C -0.12 -1.75 5.65 30.60 0.17 -1.57 16 6 C -0.12 -2.02 4.96 30.59 0.15 -1.87 16 7 C -0.08 -1.29 1.91 -10.79 -0.02 -1.31 16 8 H 0.07 1.23 6.43 -2.38 -0.02 1.22 16 9 C -0.10 -1.98 5.06 30.59 0.15 -1.83 16 10 C 0.06 1.53 5.22 71.98 0.38 1.91 16 11 O -0.36 -11.84 10.22 -51.41 -0.53 -12.36 16 12 C 0.46 18.86 7.96 71.23 0.57 19.42 16 13 O -0.55 -26.42 15.73 21.94 0.35 -26.08 16 14 C -0.09 -3.88 5.75 29.85 0.17 -3.71 16 15 C 0.04 2.06 4.26 29.85 0.13 2.19 16 16 C -0.54 -30.57 9.11 25.60 0.23 -30.33 16 17 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 18 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 19 N -0.94 -58.73 13.29 21.45 0.28 -58.44 16 20 Si 0.98 43.96 29.54 68.60 2.03 45.99 16 21 H -0.25 -10.53 7.11 99.48 0.71 -9.83 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 C -0.10 -1.33 4.73 30.60 0.14 -1.19 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.05 0.75 4.81 -2.39 -0.01 0.74 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.93 6.43 -2.39 -0.02 0.92 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 0.98 6.56 -2.39 -0.02 0.97 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 37 H 0.06 1.79 6.56 -2.38 -0.02 1.78 16 38 H 0.12 4.22 8.14 -2.38 -0.02 4.20 16 39 H 0.12 4.22 8.14 -2.39 -0.02 4.20 16 40 H -0.01 -0.67 8.10 -2.38 -0.02 -0.69 16 41 H -0.01 -0.66 8.10 -2.39 -0.02 -0.68 16 42 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 43 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -69.35 344.34 6.36 -62.99 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 0.94 Total: 9.60 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: 3.28 Total: -21.68 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: 0.28 Total: -58.44 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -0.18 Total: -38.44 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -69.35 6.36 -62.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.211 kcal (2) G-P(sol) polarization free energy of solvation -69.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds