Wall clock time and date at job start Mon Mar 30 2020 01:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.46862 * 2 1 4 4 C 1.53006 * 109.47223 * 119.99147 * 2 1 3 5 5 C 1.52997 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46978 * 299.99874 * 5 4 2 7 7 C 1.52996 * 109.46891 * 60.00410 * 6 5 4 8 8 H 1.09001 * 109.47372 * 59.99964 * 7 6 5 9 9 C 1.53001 * 109.47302 * 179.97438 * 7 6 5 10 10 C 1.53000 * 109.47194 * 295.00294 * 9 7 6 11 11 O 1.45198 * 109.47180 * 179.97438 * 10 9 7 12 12 C 1.34227 * 117.00207 * 179.97438 * 11 10 9 13 13 O 1.20836 * 119.99804 * 359.97438 * 12 11 10 14 14 C 1.50704 * 120.00447 * 179.97438 * 12 11 10 15 15 C 1.52996 * 109.46984 * 179.97438 * 14 12 11 16 16 C 1.50704 * 109.46984 * 179.97438 * 15 14 12 17 17 H 1.08010 * 119.99590 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00438 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99588 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00271 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47145 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47240 * 119.99903 * 20 18 16 23 23 H 1.48499 * 109.47166 * 239.99672 * 20 18 16 24 24 C 1.52997 * 109.47482 * 239.99435 * 2 1 3 25 25 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47747 * 300.00400 * 1 2 3 27 27 H 1.09002 * 109.47103 * 60.00812 * 1 2 3 28 28 H 1.09001 * 109.47002 * 60.00080 * 4 2 1 29 29 H 1.09000 * 109.47050 * 300.00346 * 4 2 1 30 30 H 1.09002 * 109.47045 * 180.02562 * 5 4 2 31 31 H 1.09001 * 109.47375 * 59.99966 * 5 4 2 32 32 H 1.08992 * 109.47056 * 300.00064 * 6 5 4 33 33 H 1.09004 * 109.47006 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.46989 * 54.99886 * 9 7 6 35 35 H 1.08994 * 109.47704 * 174.99699 * 9 7 6 36 36 H 1.09002 * 109.46818 * 299.99696 * 10 9 7 37 37 H 1.09004 * 109.47242 * 59.99175 * 10 9 7 38 38 H 1.08996 * 109.46896 * 300.00340 * 14 12 11 39 39 H 1.08995 * 109.46699 * 59.99922 * 14 12 11 40 40 H 1.08996 * 109.47712 * 299.99999 * 15 14 12 41 41 H 1.09005 * 109.47309 * 60.00509 * 15 14 12 42 42 H 0.97007 * 119.99726 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.47153 * 59.99783 * 24 2 1 44 44 H 1.09001 * 109.46832 * 299.99974 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5699 -0.7205 1.2497 6 6 4.0804 -1.4416 0.0006 7 6 3.5705 -0.7205 -1.2487 8 1 3.9335 0.3073 -1.2487 9 6 4.0814 -1.4412 -2.4979 10 6 5.6062 -1.3322 -2.5617 11 8 6.0912 -2.0167 -3.7469 12 6 7.4176 -2.0138 -3.9524 13 8 8.1493 -1.4574 -3.1681 14 6 7.9944 -2.7046 -5.1613 15 6 9.5168 -2.5525 -5.1575 16 6 10.0937 -3.2438 -6.3660 17 1 9.4396 -3.7415 -7.0669 18 6 11.4561 -3.2410 -6.5770 19 7 12.2523 -2.6346 -5.7238 20 14 12.1710 -4.0972 -8.0753 21 1 11.0723 -4.6985 -8.8731 22 1 12.9041 -3.1094 -8.9073 23 1 13.1052 -5.1650 -7.6366 24 6 2.0400 -0.7213 -1.2491 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.6766 -1.7488 1.2495 29 1 1.6766 -0.2072 2.1393 30 1 3.9333 -1.2346 2.1395 31 1 3.9329 0.3073 1.2498 32 1 3.7175 -2.4693 0.0005 33 1 5.1705 -1.4416 0.0010 34 1 3.7937 -2.4916 -2.4546 35 1 3.6469 -0.9819 -3.3857 36 1 5.8939 -0.2818 -2.6051 37 1 6.0408 -1.7916 -1.6739 38 1 7.7345 -3.7627 -5.1335 39 1 7.5868 -2.2539 -6.0661 40 1 9.7764 -1.4943 -5.1854 41 1 9.9247 -3.0030 -4.2526 42 1 13.2110 -2.6329 -5.8721 43 1 1.6767 -0.2076 -2.1392 44 1 1.6767 -1.7490 -1.2490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615757.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:09 Heat of formation + Delta-G solvation = -145.826617 kcal Electronic energy + Delta-G solvation = -20089.668030 eV Core-core repulsion = 17004.755266 eV Total energy + Delta-G solvation = -3084.912764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.98264 -39.25568 -36.27386 -34.16910 -33.56133 -32.14463 -31.13271 -28.98736 -26.64751 -26.00428 -23.70199 -22.31342 -21.93394 -20.40448 -20.07651 -19.66380 -17.28950 -16.33211 -16.29384 -15.52093 -15.43663 -14.90044 -14.69726 -14.45229 -14.23082 -13.99048 -13.57216 -12.87217 -12.71798 -12.64375 -12.34380 -12.19390 -12.12632 -11.83025 -11.67570 -11.33138 -11.24887 -11.12961 -11.02155 -10.96288 -10.68332 -10.62108 -10.39553 -10.28706 -10.09048 -10.00728 -9.87331 -9.50932 -9.14871 -8.37317 -6.00847 -4.05569 2.87538 3.14502 3.31266 3.38659 3.42545 4.34071 4.37941 4.43071 4.45793 4.73685 4.81778 4.98835 5.03892 5.08343 5.17797 5.20612 5.34177 5.34605 5.36992 5.38841 5.41135 5.51599 5.53419 5.65540 5.71027 5.75935 5.79805 5.89963 5.94583 5.99562 6.00667 6.06888 6.13528 6.15189 6.23134 6.26886 6.69689 6.99420 7.67947 7.74955 7.99180 8.28221 8.45341 9.01875 9.58454 11.10246 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.058648 B = 0.002521 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.314053 B =11105.972415 C =11408.491112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 H 0.069 0.931 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.121 4.121 7 C -0.084 4.084 8 H 0.073 0.927 9 C -0.114 4.114 10 C 0.063 3.937 11 O -0.368 6.368 12 C 0.456 3.544 13 O -0.507 6.507 14 C -0.103 4.103 15 C 0.032 3.968 16 C -0.527 4.527 17 H 0.059 0.941 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.896 3.104 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.107 4.107 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.261 0.739 43 H 0.063 0.937 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.342 4.088 11.968 26.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.087 0.913 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.158 4.158 7 C -0.103 4.103 8 H 0.091 0.909 9 C -0.151 4.151 10 C -0.012 4.012 11 O -0.286 6.286 12 C 0.299 3.701 13 O -0.394 6.394 14 C -0.141 4.141 15 C -0.005 4.005 16 C -0.565 4.565 17 H 0.078 0.922 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.723 3.277 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.144 4.144 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.954 4.310 12.268 26.382 hybrid contribution 0.562 -0.318 -0.613 0.891 sum -22.392 3.993 11.655 25.557 Atomic orbital electron populations 1.21830 0.95351 1.01758 1.01549 1.21141 0.95278 0.99697 0.95046 0.91273 1.21603 0.95618 1.00614 0.97318 1.21537 0.95513 1.00858 0.97870 1.21699 1.00767 0.99460 0.93908 1.21105 0.95515 0.99823 0.93826 0.90887 1.21597 0.93091 1.02032 0.98385 1.22999 0.94414 0.97067 0.86675 1.86540 1.26489 1.70675 1.44930 1.24751 0.79353 0.77861 0.88108 1.90630 1.60230 1.42081 1.46475 1.21751 1.00732 1.00064 0.91562 1.19021 0.85202 0.98441 0.97818 1.21203 0.92109 1.34888 1.08333 0.92249 1.25032 0.97233 0.95509 0.96659 1.70010 1.03857 1.42996 1.35951 0.86481 0.79132 0.79306 0.82734 1.19647 1.20971 1.20978 1.21626 0.94422 1.00896 0.97481 0.92735 0.92844 0.92714 0.92023 0.92262 0.92006 0.91992 0.91738 0.91558 0.90844 0.90827 0.91744 0.91446 0.89006 0.89012 0.95607 0.95609 0.92917 0.91832 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.19 37.15 0.34 -0.55 16 2 C -0.09 -0.64 2.72 -90.62 -0.25 -0.89 16 3 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 4 C -0.11 -0.79 5.20 -26.73 -0.14 -0.93 16 5 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 6 C -0.12 -1.05 4.96 -26.73 -0.13 -1.18 16 7 C -0.08 -0.73 2.19 -90.60 -0.20 -0.93 16 8 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 9 C -0.11 -1.17 5.06 -26.73 -0.14 -1.31 16 10 C 0.06 0.86 5.22 37.16 0.19 1.06 16 11 O -0.37 -6.28 10.22 -39.25 -0.40 -6.69 16 12 C 0.46 9.27 7.96 36.01 0.29 9.56 16 13 O -0.51 -11.90 15.73 -18.76 -0.30 -12.19 16 14 C -0.10 -2.17 5.75 -27.88 -0.16 -2.33 16 15 C 0.03 0.87 4.26 -27.88 -0.12 0.75 16 16 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 17 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 20 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C -0.11 -0.80 4.49 -26.71 -0.12 -0.92 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.64 6.56 -51.93 -0.34 0.30 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 37 H 0.07 0.94 6.56 -51.93 -0.34 0.60 16 38 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 39 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 40 H 0.03 0.75 8.10 -51.93 -0.42 0.32 16 41 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 351.37 15.07 5.30 5.30 Total: -1.00 -31.73 351.37 -8.93 -40.66 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -8.25 Total: -4.77 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -1.00 Total: -12.38 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.74 Total: -26.50 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.70 Total: -18.88 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.73 -8.93 -40.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615757.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.164 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds