Wall clock time and date at job start Mon Mar 30 2020 01:03:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 H 1.08998 * 109.46862 * 2 1
4 4 C 1.53006 * 109.47223 * 119.99147 * 2 1 3
5 5 C 1.52997 * 109.47164 * 180.02562 * 4 2 1
6 6 C 1.53002 * 109.46978 * 299.99874 * 5 4 2
7 7 C 1.52996 * 109.46891 * 60.00410 * 6 5 4
8 8 H 1.09001 * 109.47372 * 59.99964 * 7 6 5
9 9 C 1.53001 * 109.47302 * 179.97438 * 7 6 5
10 10 C 1.53000 * 109.47194 * 295.00294 * 9 7 6
11 11 O 1.45198 * 109.47180 * 179.97438 * 10 9 7
12 12 C 1.34227 * 117.00207 * 179.97438 * 11 10 9
13 13 O 1.20836 * 119.99804 * 359.97438 * 12 11 10
14 14 C 1.50704 * 120.00447 * 179.97438 * 12 11 10
15 15 C 1.52996 * 109.46984 * 179.97438 * 14 12 11
16 16 C 1.50704 * 109.46984 * 179.97438 * 15 14 12
17 17 H 1.08010 * 119.99590 * 0.02562 * 16 15 14
18 18 C 1.37872 * 120.00438 * 180.02562 * 16 15 14
19 19 N 1.31515 * 119.99588 * 359.97438 * 18 16 15
20 20 Si 1.86795 * 120.00271 * 180.02562 * 18 16 15
21 21 H 1.48498 * 109.47145 * 359.97438 * 20 18 16
22 22 H 1.48505 * 109.47240 * 119.99903 * 20 18 16
23 23 H 1.48499 * 109.47166 * 239.99672 * 20 18 16
24 24 C 1.52997 * 109.47482 * 239.99435 * 2 1 3
25 25 H 1.09001 * 109.47066 * 180.02562 * 1 2 3
26 26 H 1.08996 * 109.47747 * 300.00400 * 1 2 3
27 27 H 1.09002 * 109.47103 * 60.00812 * 1 2 3
28 28 H 1.09001 * 109.47002 * 60.00080 * 4 2 1
29 29 H 1.09000 * 109.47050 * 300.00346 * 4 2 1
30 30 H 1.09002 * 109.47045 * 180.02562 * 5 4 2
31 31 H 1.09001 * 109.47375 * 59.99966 * 5 4 2
32 32 H 1.08992 * 109.47056 * 300.00064 * 6 5 4
33 33 H 1.09004 * 109.47006 * 180.02562 * 6 5 4
34 34 H 1.09002 * 109.46989 * 54.99886 * 9 7 6
35 35 H 1.08994 * 109.47704 * 174.99699 * 9 7 6
36 36 H 1.09002 * 109.46818 * 299.99696 * 10 9 7
37 37 H 1.09004 * 109.47242 * 59.99175 * 10 9 7
38 38 H 1.08996 * 109.46896 * 300.00340 * 14 12 11
39 39 H 1.08995 * 109.46699 * 59.99922 * 14 12 11
40 40 H 1.08996 * 109.47712 * 299.99999 * 15 14 12
41 41 H 1.09005 * 109.47309 * 60.00509 * 15 14 12
42 42 H 0.97007 * 119.99726 * 179.97438 * 19 18 16
43 43 H 1.09002 * 109.47153 * 59.99783 * 24 2 1
44 44 H 1.09001 * 109.46832 * 299.99974 * 24 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0400 -0.7211 1.2494
5 6 3.5699 -0.7205 1.2497
6 6 4.0804 -1.4416 0.0006
7 6 3.5705 -0.7205 -1.2487
8 1 3.9335 0.3073 -1.2487
9 6 4.0814 -1.4412 -2.4979
10 6 5.6062 -1.3322 -2.5617
11 8 6.0912 -2.0167 -3.7469
12 6 7.4176 -2.0138 -3.9524
13 8 8.1493 -1.4574 -3.1681
14 6 7.9944 -2.7046 -5.1613
15 6 9.5168 -2.5525 -5.1575
16 6 10.0937 -3.2438 -6.3660
17 1 9.4396 -3.7415 -7.0669
18 6 11.4561 -3.2410 -6.5770
19 7 12.2523 -2.6346 -5.7238
20 14 12.1710 -4.0972 -8.0753
21 1 11.0723 -4.6985 -8.8731
22 1 12.9041 -3.1094 -8.9073
23 1 13.1052 -5.1650 -7.6366
24 6 2.0400 -0.7213 -1.2491
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3634 0.5139 0.8899
27 1 -0.3633 0.5137 -0.8901
28 1 1.6766 -1.7488 1.2495
29 1 1.6766 -0.2072 2.1393
30 1 3.9333 -1.2346 2.1395
31 1 3.9329 0.3073 1.2498
32 1 3.7175 -2.4693 0.0005
33 1 5.1705 -1.4416 0.0010
34 1 3.7937 -2.4916 -2.4546
35 1 3.6469 -0.9819 -3.3857
36 1 5.8939 -0.2818 -2.6051
37 1 6.0408 -1.7916 -1.6739
38 1 7.7345 -3.7627 -5.1335
39 1 7.5868 -2.2539 -6.0661
40 1 9.7764 -1.4943 -5.1854
41 1 9.9247 -3.0030 -4.2526
42 1 13.2110 -2.6329 -5.8721
43 1 1.6767 -0.2076 -2.1392
44 1 1.6767 -1.7490 -1.2490
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000812615757.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:03:09
Heat of formation + Delta-G solvation = -145.826617 kcal
Electronic energy + Delta-G solvation = -20089.668030 eV
Core-core repulsion = 17004.755266 eV
Total energy + Delta-G solvation = -3084.912764 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.183 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-39.98264 -39.25568 -36.27386 -34.16910 -33.56133 -32.14463 -31.13271 -28.98736
-26.64751 -26.00428 -23.70199 -22.31342 -21.93394 -20.40448 -20.07651 -19.66380
-17.28950 -16.33211 -16.29384 -15.52093 -15.43663 -14.90044 -14.69726 -14.45229
-14.23082 -13.99048 -13.57216 -12.87217 -12.71798 -12.64375 -12.34380 -12.19390
-12.12632 -11.83025 -11.67570 -11.33138 -11.24887 -11.12961 -11.02155 -10.96288
-10.68332 -10.62108 -10.39553 -10.28706 -10.09048 -10.00728 -9.87331 -9.50932
-9.14871 -8.37317 -6.00847 -4.05569 2.87538 3.14502 3.31266 3.38659
3.42545 4.34071 4.37941 4.43071 4.45793 4.73685 4.81778 4.98835
5.03892 5.08343 5.17797 5.20612 5.34177 5.34605 5.36992 5.38841
5.41135 5.51599 5.53419 5.65540 5.71027 5.75935 5.79805 5.89963
5.94583 5.99562 6.00667 6.06888 6.13528 6.15189 6.23134 6.26886
6.69689 6.99420 7.67947 7.74955 7.99180 8.28221 8.45341 9.01875
9.58454 11.10246
Molecular weight = 268.18amu
Principal moments of inertia in cm(-1)
A = 0.058648 B = 0.002521 C = 0.002454
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 477.314053 B =11105.972415 C =11408.491112
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.093 4.093
3 H 0.069 0.931
4 C -0.114 4.114
5 C -0.120 4.120
6 C -0.121 4.121
7 C -0.084 4.084
8 H 0.073 0.927
9 C -0.114 4.114
10 C 0.063 3.937
11 O -0.368 6.368
12 C 0.456 3.544
13 O -0.507 6.507
14 C -0.103 4.103
15 C 0.032 3.968
16 C -0.527 4.527
17 H 0.059 0.941
18 C 0.058 3.942
19 N -0.890 5.890
20 Si 0.896 3.104
21 H -0.272 1.272
22 H -0.284 1.284
23 H -0.284 1.284
24 C -0.107 4.107
25 H 0.054 0.946
26 H 0.052 0.948
27 H 0.054 0.946
28 H 0.061 0.939
29 H 0.059 0.941
30 H 0.061 0.939
31 H 0.061 0.939
32 H 0.064 0.936
33 H 0.066 0.934
34 H 0.073 0.927
35 H 0.073 0.927
36 H 0.064 0.936
37 H 0.067 0.933
38 H 0.092 0.908
39 H 0.092 0.908
40 H 0.026 0.974
41 H 0.026 0.974
42 H 0.261 0.739
43 H 0.063 0.937
44 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.342 4.088 11.968 26.548
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.112 4.112
3 H 0.087 0.913
4 C -0.152 4.152
5 C -0.158 4.158
6 C -0.158 4.158
7 C -0.103 4.103
8 H 0.091 0.909
9 C -0.151 4.151
10 C -0.012 4.012
11 O -0.286 6.286
12 C 0.299 3.701
13 O -0.394 6.394
14 C -0.141 4.141
15 C -0.005 4.005
16 C -0.565 4.565
17 H 0.078 0.922
18 C -0.144 4.144
19 N -0.528 5.528
20 Si 0.723 3.277
21 H -0.196 1.196
22 H -0.210 1.210
23 H -0.210 1.210
24 C -0.144 4.144
25 H 0.073 0.927
26 H 0.072 0.928
27 H 0.073 0.927
28 H 0.080 0.920
29 H 0.077 0.923
30 H 0.080 0.920
31 H 0.080 0.920
32 H 0.083 0.917
33 H 0.084 0.916
34 H 0.092 0.908
35 H 0.092 0.908
36 H 0.083 0.917
37 H 0.086 0.914
38 H 0.110 0.890
39 H 0.110 0.890
40 H 0.044 0.956
41 H 0.044 0.956
42 H 0.071 0.929
43 H 0.082 0.918
44 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -22.954 4.310 12.268 26.382
hybrid contribution 0.562 -0.318 -0.613 0.891
sum -22.392 3.993 11.655 25.557
Atomic orbital electron populations
1.21830 0.95351 1.01758 1.01549 1.21141 0.95278 0.99697 0.95046
0.91273 1.21603 0.95618 1.00614 0.97318 1.21537 0.95513 1.00858
0.97870 1.21699 1.00767 0.99460 0.93908 1.21105 0.95515 0.99823
0.93826 0.90887 1.21597 0.93091 1.02032 0.98385 1.22999 0.94414
0.97067 0.86675 1.86540 1.26489 1.70675 1.44930 1.24751 0.79353
0.77861 0.88108 1.90630 1.60230 1.42081 1.46475 1.21751 1.00732
1.00064 0.91562 1.19021 0.85202 0.98441 0.97818 1.21203 0.92109
1.34888 1.08333 0.92249 1.25032 0.97233 0.95509 0.96659 1.70010
1.03857 1.42996 1.35951 0.86481 0.79132 0.79306 0.82734 1.19647
1.20971 1.20978 1.21626 0.94422 1.00896 0.97481 0.92735 0.92844
0.92714 0.92023 0.92262 0.92006 0.91992 0.91738 0.91558 0.90844
0.90827 0.91744 0.91446 0.89006 0.89012 0.95607 0.95609 0.92917
0.91832 0.91766
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.89 9.19 37.15 0.34 -0.55 16
2 C -0.09 -0.64 2.72 -90.62 -0.25 -0.89 16
3 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16
4 C -0.11 -0.79 5.20 -26.73 -0.14 -0.93 16
5 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16
6 C -0.12 -1.05 4.96 -26.73 -0.13 -1.18 16
7 C -0.08 -0.73 2.19 -90.60 -0.20 -0.93 16
8 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
9 C -0.11 -1.17 5.06 -26.73 -0.14 -1.31 16
10 C 0.06 0.86 5.22 37.16 0.19 1.06 16
11 O -0.37 -6.28 10.22 -39.25 -0.40 -6.69 16
12 C 0.46 9.27 7.96 36.01 0.29 9.56 16
13 O -0.51 -11.90 15.73 -18.76 -0.30 -12.19 16
14 C -0.10 -2.17 5.75 -27.88 -0.16 -2.33 16
15 C 0.03 0.87 4.26 -27.88 -0.12 0.75 16
16 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16
17 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16
18 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16
19 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16
20 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16
21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16
22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
24 C -0.11 -0.80 4.49 -26.71 -0.12 -0.92 16
25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16
26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16
27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16
28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16
30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
33 H 0.07 0.64 6.56 -51.93 -0.34 0.30 16
34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16
36 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16
37 H 0.07 0.94 6.56 -51.93 -0.34 0.60 16
38 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16
39 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16
40 H 0.03 0.75 8.10 -51.93 -0.42 0.32 16
41 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16
42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16
43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
LS Contribution 351.37 15.07 5.30 5.30
Total: -1.00 -31.73 351.37 -8.93 -40.66
By element:
Atomic # 1 Polarization: 3.49 SS G_CDS: -8.25 Total: -4.77 kcal
Atomic # 6 Polarization: -11.38 SS G_CDS: -1.00 Total: -12.38 kcal
Atomic # 7 Polarization: -27.24 SS G_CDS: 0.74 Total: -26.50 kcal
Atomic # 8 Polarization: -18.18 SS G_CDS: -0.70 Total: -18.88 kcal
Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal
Total LS contribution 5.30 Total: 5.30 kcal
Total: -31.73 -8.93 -40.66 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000812615757.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -105.164 kcal
(2) G-P(sol) polarization free energy of solvation -31.728 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.892 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.662 kcal
(6) G-S(sol) free energy of system = (1) + (5) -145.827 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds