Wall clock time and date at job start Mon Mar 30 2020 01:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.46862 * 2 1 4 4 C 1.53006 * 109.47223 * 119.99147 * 2 1 3 5 5 C 1.52997 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46978 * 299.99874 * 5 4 2 7 7 C 1.52996 * 109.46891 * 60.00410 * 6 5 4 8 8 H 1.09001 * 109.47372 * 59.99964 * 7 6 5 9 9 C 1.53001 * 109.47302 * 179.97438 * 7 6 5 10 10 C 1.53000 * 109.47194 * 295.00294 * 9 7 6 11 11 O 1.45198 * 109.47180 * 179.97438 * 10 9 7 12 12 C 1.34227 * 117.00207 * 179.97438 * 11 10 9 13 13 O 1.20836 * 119.99804 * 359.97438 * 12 11 10 14 14 C 1.50704 * 120.00447 * 179.97438 * 12 11 10 15 15 C 1.52996 * 109.46984 * 179.97438 * 14 12 11 16 16 C 1.50704 * 109.46984 * 179.97438 * 15 14 12 17 17 H 1.08010 * 119.99590 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00438 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99588 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00271 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47145 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47240 * 119.99903 * 20 18 16 23 23 H 1.48499 * 109.47166 * 239.99672 * 20 18 16 24 24 C 1.52997 * 109.47482 * 239.99435 * 2 1 3 25 25 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47747 * 300.00400 * 1 2 3 27 27 H 1.09002 * 109.47103 * 60.00812 * 1 2 3 28 28 H 1.09001 * 109.47002 * 60.00080 * 4 2 1 29 29 H 1.09000 * 109.47050 * 300.00346 * 4 2 1 30 30 H 1.09002 * 109.47045 * 180.02562 * 5 4 2 31 31 H 1.09001 * 109.47375 * 59.99966 * 5 4 2 32 32 H 1.08992 * 109.47056 * 300.00064 * 6 5 4 33 33 H 1.09004 * 109.47006 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.46989 * 54.99886 * 9 7 6 35 35 H 1.08994 * 109.47704 * 174.99699 * 9 7 6 36 36 H 1.09002 * 109.46818 * 299.99696 * 10 9 7 37 37 H 1.09004 * 109.47242 * 59.99175 * 10 9 7 38 38 H 1.08996 * 109.46896 * 300.00340 * 14 12 11 39 39 H 1.08995 * 109.46699 * 59.99922 * 14 12 11 40 40 H 1.08996 * 109.47712 * 299.99999 * 15 14 12 41 41 H 1.09005 * 109.47309 * 60.00509 * 15 14 12 42 42 H 0.97007 * 119.99726 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.47153 * 59.99783 * 24 2 1 44 44 H 1.09001 * 109.46832 * 299.99974 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5699 -0.7205 1.2497 6 6 4.0804 -1.4416 0.0006 7 6 3.5705 -0.7205 -1.2487 8 1 3.9335 0.3073 -1.2487 9 6 4.0814 -1.4412 -2.4979 10 6 5.6062 -1.3322 -2.5617 11 8 6.0912 -2.0167 -3.7469 12 6 7.4176 -2.0138 -3.9524 13 8 8.1493 -1.4574 -3.1681 14 6 7.9944 -2.7046 -5.1613 15 6 9.5168 -2.5525 -5.1575 16 6 10.0937 -3.2438 -6.3660 17 1 9.4396 -3.7415 -7.0669 18 6 11.4561 -3.2410 -6.5770 19 7 12.2523 -2.6346 -5.7238 20 14 12.1710 -4.0972 -8.0753 21 1 11.0723 -4.6985 -8.8731 22 1 12.9041 -3.1094 -8.9073 23 1 13.1052 -5.1650 -7.6366 24 6 2.0400 -0.7213 -1.2491 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.6766 -1.7488 1.2495 29 1 1.6766 -0.2072 2.1393 30 1 3.9333 -1.2346 2.1395 31 1 3.9329 0.3073 1.2498 32 1 3.7175 -2.4693 0.0005 33 1 5.1705 -1.4416 0.0010 34 1 3.7937 -2.4916 -2.4546 35 1 3.6469 -0.9819 -3.3857 36 1 5.8939 -0.2818 -2.6051 37 1 6.0408 -1.7916 -1.6739 38 1 7.7345 -3.7627 -5.1335 39 1 7.5868 -2.2539 -6.0661 40 1 9.7764 -1.4943 -5.1854 41 1 9.9247 -3.0030 -4.2526 42 1 13.2110 -2.6329 -5.8721 43 1 1.6767 -0.2076 -2.1392 44 1 1.6767 -1.7490 -1.2490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812615757.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:08 Heat of formation + Delta-G solvation = -161.409490 kcal Electronic energy + Delta-G solvation = -20090.343754 eV Core-core repulsion = 17004.755266 eV Total energy + Delta-G solvation = -3085.588488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.49219 -39.99985 -37.75369 -35.65419 -34.99224 -33.16395 -32.74906 -29.96445 -27.95087 -27.18954 -24.95167 -23.64589 -22.93998 -21.51654 -21.02704 -20.65440 -19.07104 -18.14768 -17.74727 -16.99222 -16.48188 -16.14764 -15.96611 -15.44062 -15.12232 -14.75985 -14.66628 -14.34159 -14.18197 -13.92066 -13.36616 -13.23916 -13.09458 -12.88307 -12.83152 -12.65639 -12.57479 -12.47343 -12.04345 -12.01897 -11.88258 -11.75964 -11.73537 -11.48313 -11.44588 -11.30255 -11.26461 -10.87477 -10.81062 -10.59380 -8.20639 -6.34504 1.23363 1.43225 1.44426 1.57897 1.73127 2.43004 3.13180 3.60414 3.70214 3.78179 3.93457 3.98539 4.11050 4.21662 4.29040 4.37642 4.39544 4.44873 4.51145 4.55953 4.60615 4.64442 4.76561 4.83645 4.88135 4.89481 4.99284 5.04602 5.07879 5.13693 5.19869 5.30296 5.33099 5.39885 5.43836 5.46559 5.48181 5.48773 5.54219 5.64517 5.80089 6.12586 6.79111 6.86381 7.35840 8.92336 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.058648 B = 0.002521 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.314053 B =11105.972415 C =11408.491112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.066 0.934 4 C -0.111 4.111 5 C -0.120 4.120 6 C -0.122 4.122 7 C -0.080 4.080 8 H 0.070 0.930 9 C -0.103 4.103 10 C 0.056 3.944 11 O -0.358 6.358 12 C 0.463 3.537 13 O -0.547 6.547 14 C -0.095 4.095 15 C 0.038 3.962 16 C -0.543 4.543 17 H 0.078 0.922 18 C -0.006 4.006 19 N -0.937 5.937 20 Si 0.976 3.024 21 H -0.253 1.253 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.103 4.103 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.116 0.884 39 H 0.116 0.884 40 H -0.011 1.011 41 H -0.011 1.011 42 H 0.264 0.736 43 H 0.068 0.932 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.364 3.258 10.928 27.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.084 0.916 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.159 4.159 7 C -0.098 4.098 8 H 0.088 0.912 9 C -0.141 4.141 10 C -0.017 4.017 11 O -0.275 6.275 12 C 0.309 3.691 13 O -0.437 6.437 14 C -0.132 4.132 15 C 0.000 4.000 16 C -0.580 4.580 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.576 5.576 20 Si 0.800 3.200 21 H -0.176 1.176 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.140 4.140 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.008 0.992 41 H 0.007 0.993 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -25.025 3.474 11.225 27.647 hybrid contribution 1.146 -0.020 -0.209 1.165 sum -23.880 3.454 11.016 26.524 Atomic orbital electron populations 1.21807 0.94521 1.02010 1.01936 1.21134 0.95940 0.99382 0.94650 0.91580 1.21587 0.94763 1.00839 0.97706 1.21531 0.96285 1.00530 0.97384 1.21698 0.99833 0.99827 0.94587 1.21076 0.96549 0.99314 0.92869 0.91197 1.21596 0.90080 1.02816 0.99592 1.23344 0.96743 0.96452 0.85195 1.86507 1.24227 1.70552 1.46211 1.24536 0.80238 0.76967 0.87375 1.90624 1.61438 1.43872 1.47781 1.21518 0.96704 1.01969 0.92991 1.18806 0.89445 0.95624 0.96097 1.21679 0.92803 1.34739 1.08821 0.90366 1.26130 0.97882 0.96214 1.00171 1.70174 1.04319 1.44721 1.38431 0.85235 0.78519 0.77927 0.78333 1.17631 1.20601 1.20609 1.21597 0.93079 1.01284 0.98076 0.92537 0.92378 0.92469 0.91860 0.91567 0.91794 0.92276 0.91497 0.93095 0.90222 0.90021 0.92134 0.91793 0.86574 0.86574 0.99249 0.99256 0.92748 0.91325 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.19 71.98 0.66 -0.81 16 2 C -0.09 -1.11 2.72 -10.79 -0.03 -1.14 16 3 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.11 -1.36 5.20 30.60 0.16 -1.20 16 5 C -0.12 -1.73 5.92 30.59 0.18 -1.55 16 6 C -0.12 -2.03 4.96 30.59 0.15 -1.88 16 7 C -0.08 -1.28 2.19 -10.78 -0.02 -1.30 16 8 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 9 C -0.10 -1.97 5.06 30.59 0.15 -1.82 16 10 C 0.06 1.52 5.22 71.98 0.38 1.90 16 11 O -0.36 -11.84 10.22 -51.39 -0.53 -12.36 16 12 C 0.46 18.87 7.96 71.24 0.57 19.43 16 13 O -0.55 -26.45 15.73 21.93 0.35 -26.11 16 14 C -0.09 -3.89 5.75 29.85 0.17 -3.72 16 15 C 0.04 2.07 4.26 29.85 0.13 2.19 16 16 C -0.54 -30.58 9.11 25.60 0.23 -30.34 16 17 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 18 C -0.01 -0.37 5.46 84.65 0.46 0.10 16 19 N -0.94 -58.72 13.29 21.45 0.28 -58.44 16 20 Si 0.98 43.97 29.54 68.60 2.03 46.00 16 21 H -0.25 -10.53 7.11 99.48 0.71 -9.82 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 C -0.10 -1.34 4.49 30.61 0.14 -1.20 16 25 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 1.00 6.56 -2.38 -0.02 0.98 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 1.70 8.13 -2.39 -0.02 1.68 16 37 H 0.06 1.80 6.56 -2.39 -0.02 1.78 16 38 H 0.12 4.23 8.14 -2.39 -0.02 4.21 16 39 H 0.12 4.23 8.14 -2.39 -0.02 4.21 16 40 H -0.01 -0.67 8.10 -2.39 -0.02 -0.69 16 41 H -0.01 -0.68 8.10 -2.38 -0.02 -0.70 16 42 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 43 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -69.36 351.37 6.39 -62.97 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.93 Total: 9.27 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: 3.33 Total: -21.32 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.28 Total: -58.44 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.18 Total: -38.47 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -69.36 6.39 -62.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615757.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.443 kcal (2) G-P(sol) polarization free energy of solvation -69.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds