Wall clock time and date at job start Mon Mar 30 2020 00:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99805 * 2 1 3 5 5 C 1.52997 * 109.47592 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47165 * 60.00300 * 5 4 2 7 7 C 1.52995 * 109.47577 * 180.02562 * 6 5 4 8 8 O 1.45201 * 109.46626 * 295.00013 * 7 6 5 9 9 C 1.34234 * 117.00150 * 179.97438 * 8 7 6 10 10 O 1.20829 * 119.99707 * 359.97438 * 9 8 7 11 11 C 1.50700 * 120.00317 * 179.97438 * 9 8 7 12 12 C 1.52994 * 109.46920 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.46920 * 180.02562 * 12 11 9 14 14 H 1.08001 * 120.00159 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00187 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00160 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99774 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47005 * 89.99925 * 17 15 13 19 19 H 1.48499 * 109.46804 * 210.00015 * 17 15 13 20 20 H 1.48499 * 109.47066 * 329.99808 * 17 15 13 21 21 C 1.53002 * 109.46972 * 300.00293 * 6 5 4 22 22 C 1.52997 * 109.47415 * 59.99860 * 21 6 5 23 23 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 24 24 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 28 28 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 29 29 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 30 30 H 1.09002 * 109.46719 * 60.00054 * 4 2 1 31 31 H 1.09000 * 109.47140 * 300.00346 * 5 4 2 32 32 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 33 33 H 1.08996 * 109.47134 * 59.99508 * 6 5 4 34 34 H 1.08998 * 109.47220 * 54.99171 * 7 6 5 35 35 H 1.08991 * 109.47712 * 174.99863 * 7 6 5 36 36 H 1.09000 * 109.46938 * 299.99791 * 11 9 8 37 37 H 1.08993 * 109.46735 * 60.00063 * 11 9 8 38 38 H 1.08996 * 109.47620 * 300.00218 * 12 11 9 39 39 H 1.09004 * 109.47626 * 60.00346 * 12 11 9 40 40 H 0.97004 * 119.99856 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.46986 * 299.99742 * 21 6 5 42 42 H 1.09001 * 109.47601 * 180.02562 * 21 6 5 43 43 H 1.09001 * 109.46922 * 180.02562 * 22 21 6 44 44 H 1.09000 * 109.47140 * 59.99976 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4416 -0.0003 7 6 5.6105 -1.4405 -0.0002 8 8 6.0950 -2.2254 -1.1216 9 6 7.4259 -2.3250 -1.2660 10 8 8.1615 -1.7742 -0.4816 11 6 8.0024 -3.1238 -2.4065 12 6 9.5302 -3.0757 -2.3416 13 6 10.1068 -3.8739 -3.4824 14 1 9.4492 -4.3667 -4.1833 15 6 11.4738 -3.9761 -3.6308 16 7 11.9769 -4.6732 -4.6260 17 14 12.6111 -3.1256 -2.4173 18 1 12.9138 -4.0474 -1.2930 19 1 13.8736 -2.7492 -3.1025 20 1 11.9500 -1.9042 -1.8917 21 6 3.5705 -0.7204 1.2490 22 6 2.0405 -0.7209 1.2493 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2492 30 1 1.6768 -0.2074 -2.1392 31 1 3.9330 0.3071 -1.2497 32 1 3.9334 -1.2342 -2.1397 33 1 3.7176 -2.4693 0.0000 34 1 5.9732 -0.4166 -0.0899 35 1 5.9742 -1.8745 0.9311 36 1 7.6676 -4.1584 -2.3312 37 1 7.6658 -2.7009 -3.3529 38 1 9.8647 -2.0410 -2.4171 39 1 9.8673 -3.4983 -1.3951 40 1 12.9386 -4.7447 -4.7306 41 1 3.9335 0.3074 1.2488 42 1 3.9345 -1.2336 2.1390 43 1 1.6772 -0.2067 2.1391 44 1 1.6776 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812618724.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:50 Heat of formation + Delta-G solvation = -135.606866 kcal Electronic energy + Delta-G solvation = -20647.748748 eV Core-core repulsion = 17563.279145 eV Total energy + Delta-G solvation = -3084.469602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.30953 -39.56174 -36.37997 -34.00359 -33.59991 -31.41081 -31.05569 -28.60313 -27.62734 -26.43380 -24.18675 -23.03001 -21.72404 -20.72021 -19.75017 -18.69252 -17.45989 -16.62697 -16.26963 -15.78554 -15.39029 -15.09745 -14.39603 -14.24276 -14.13413 -13.84805 -13.54299 -13.16441 -12.74240 -12.55478 -12.45908 -12.32539 -12.18081 -12.05098 -11.71381 -11.55076 -11.35692 -11.20574 -11.14818 -11.01152 -10.45969 -10.38005 -10.34461 -10.29556 -10.15172 -10.08238 -9.89555 -9.66201 -9.25162 -8.55318 -6.06866 -4.06588 2.73313 3.05312 3.34592 3.41470 3.50885 4.32077 4.37150 4.45074 4.46642 4.71962 4.84929 4.90534 5.09903 5.13058 5.22601 5.26052 5.27929 5.29272 5.38235 5.42631 5.45804 5.52681 5.57725 5.67533 5.68596 5.72160 5.78299 5.83617 5.92459 5.93053 6.01426 6.03765 6.06592 6.12077 6.24148 6.32046 6.52245 6.84652 7.24961 7.32189 7.71587 8.25376 8.47823 8.95621 9.55045 11.05732 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.047040 B = 0.003027 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.098769 B = 9247.796983 C = 9511.351056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.067 4.067 3 C -0.146 4.146 4 C -0.107 4.107 5 C -0.117 4.117 6 C -0.084 4.084 7 C 0.068 3.932 8 O -0.362 6.362 9 C 0.457 3.543 10 O -0.514 6.514 11 C -0.096 4.096 12 C -0.002 4.002 13 C -0.527 4.527 14 H 0.075 0.925 15 C 0.070 3.930 16 N -0.901 5.901 17 Si 0.877 3.123 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.262 1.262 21 C -0.115 4.115 22 C -0.105 4.105 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.025 0.975 39 H 0.021 0.979 40 H 0.264 0.736 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.472 9.845 10.788 27.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.067 4.067 3 C -0.203 4.203 4 C -0.145 4.145 5 C -0.154 4.154 6 C -0.103 4.103 7 C -0.006 4.006 8 O -0.279 6.279 9 C 0.301 3.699 10 O -0.401 6.401 11 C -0.133 4.133 12 C -0.040 4.040 13 C -0.564 4.564 14 H 0.093 0.907 15 C -0.131 4.131 16 N -0.539 5.539 17 Si 0.704 3.296 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.186 1.186 21 C -0.153 4.153 22 C -0.142 4.142 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.044 0.956 39 H 0.039 0.961 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.101 9.975 10.963 27.447 hybrid contribution 0.766 0.444 0.715 1.138 sum -22.335 10.418 11.678 27.272 Atomic orbital electron populations 1.21865 0.94771 1.01656 1.01570 1.20565 0.95046 0.95631 0.95497 1.21984 1.01665 0.95239 1.01402 1.21595 0.95572 1.00392 0.96928 1.21621 0.95188 1.00704 0.97885 1.21177 0.92262 1.00972 0.95844 1.23011 0.94043 0.95386 0.88174 1.86542 1.25704 1.66953 1.48746 1.24715 0.79618 0.78926 0.86676 1.90614 1.60373 1.44855 1.44269 1.21525 0.99184 0.99194 0.93414 1.19476 0.88337 0.98185 0.97963 1.21038 0.92455 1.31770 1.11177 0.90654 1.24959 0.98194 0.94711 0.95269 1.69904 1.12569 1.40797 1.30641 0.86802 0.80208 0.81096 0.81479 1.20170 1.21320 1.18602 1.21560 0.95865 1.00974 0.96896 1.21554 0.94931 1.00543 0.97190 0.92837 0.92727 0.92721 0.91901 0.92830 0.92968 0.91891 0.91957 0.91747 0.90902 0.90085 0.91648 0.91635 0.88397 0.88376 0.95641 0.96093 0.92608 0.91335 0.91717 0.91907 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.48 37.16 0.31 -0.59 16 2 C -0.07 -0.49 0.77 -154.51 -0.12 -0.60 16 3 C -0.15 -1.05 7.78 37.16 0.29 -0.76 16 4 C -0.11 -0.87 4.73 -26.73 -0.13 -1.00 16 5 C -0.12 -1.12 4.83 -26.73 -0.13 -1.25 16 6 C -0.08 -0.84 2.44 -90.62 -0.22 -1.06 16 7 C 0.07 0.88 4.84 37.16 0.18 1.06 16 8 O -0.36 -5.75 9.76 -39.27 -0.38 -6.13 16 9 C 0.46 8.66 7.96 36.01 0.29 8.95 16 10 O -0.51 -11.18 15.73 -18.75 -0.29 -11.48 16 11 C -0.10 -1.89 5.75 -27.89 -0.16 -2.05 16 12 C 0.00 -0.05 3.33 -27.89 -0.09 -0.14 16 13 C -0.53 -14.96 9.66 -34.44 -0.33 -15.29 16 14 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 15 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 16 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 17 Si 0.88 22.32 27.47 -169.99 -4.67 17.65 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 21 C -0.12 -0.95 4.93 -26.73 -0.13 -1.08 16 22 C -0.10 -0.76 4.73 -26.73 -0.13 -0.88 16 23 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.49 4.81 -51.93 -0.25 0.24 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 32 H 0.07 0.80 7.82 -51.93 -0.41 0.39 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 35 H 0.07 0.86 8.13 -51.93 -0.42 0.43 16 36 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 37 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 38 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 39 H 0.02 0.53 7.52 -51.93 -0.39 0.14 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 41 H 0.07 0.56 6.43 -51.93 -0.33 0.22 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 341.94 15.07 5.15 5.15 Total: -1.00 -31.55 341.94 -7.90 -39.45 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -8.01 Total: -4.96 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -0.47 Total: -12.72 kcal Atomic # 7 Polarization: -27.73 SS G_CDS: 0.77 Total: -26.96 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.68 Total: -17.61 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.67 Total: 17.65 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.55 -7.90 -39.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618724.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.160 kcal (2) G-P(sol) polarization free energy of solvation -31.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds