Wall clock time and date at job start Mon Mar 30 2020 00:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99805 * 2 1 3 5 5 C 1.52997 * 109.47592 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47165 * 60.00300 * 5 4 2 7 7 C 1.52995 * 109.47577 * 180.02562 * 6 5 4 8 8 O 1.45201 * 109.46626 * 295.00013 * 7 6 5 9 9 C 1.34234 * 117.00150 * 179.97438 * 8 7 6 10 10 O 1.20829 * 119.99707 * 359.97438 * 9 8 7 11 11 C 1.50700 * 120.00317 * 179.97438 * 9 8 7 12 12 C 1.52994 * 109.46920 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.46920 * 180.02562 * 12 11 9 14 14 H 1.08001 * 120.00159 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00187 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00160 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99774 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47005 * 89.99925 * 17 15 13 19 19 H 1.48499 * 109.46804 * 210.00015 * 17 15 13 20 20 H 1.48499 * 109.47066 * 329.99808 * 17 15 13 21 21 C 1.53002 * 109.46972 * 300.00293 * 6 5 4 22 22 C 1.52997 * 109.47415 * 59.99860 * 21 6 5 23 23 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 24 24 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 28 28 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 29 29 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 30 30 H 1.09002 * 109.46719 * 60.00054 * 4 2 1 31 31 H 1.09000 * 109.47140 * 300.00346 * 5 4 2 32 32 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 33 33 H 1.08996 * 109.47134 * 59.99508 * 6 5 4 34 34 H 1.08998 * 109.47220 * 54.99171 * 7 6 5 35 35 H 1.08991 * 109.47712 * 174.99863 * 7 6 5 36 36 H 1.09000 * 109.46938 * 299.99791 * 11 9 8 37 37 H 1.08993 * 109.46735 * 60.00063 * 11 9 8 38 38 H 1.08996 * 109.47620 * 300.00218 * 12 11 9 39 39 H 1.09004 * 109.47626 * 60.00346 * 12 11 9 40 40 H 0.97004 * 119.99856 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.46986 * 299.99742 * 21 6 5 42 42 H 1.09001 * 109.47601 * 180.02562 * 21 6 5 43 43 H 1.09001 * 109.46922 * 180.02562 * 22 21 6 44 44 H 1.09000 * 109.47140 * 59.99976 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4416 -0.0003 7 6 5.6105 -1.4405 -0.0002 8 8 6.0950 -2.2254 -1.1216 9 6 7.4259 -2.3250 -1.2660 10 8 8.1615 -1.7742 -0.4816 11 6 8.0024 -3.1238 -2.4065 12 6 9.5302 -3.0757 -2.3416 13 6 10.1068 -3.8739 -3.4824 14 1 9.4492 -4.3667 -4.1833 15 6 11.4738 -3.9761 -3.6308 16 7 11.9769 -4.6732 -4.6260 17 14 12.6111 -3.1256 -2.4173 18 1 12.9138 -4.0474 -1.2930 19 1 13.8736 -2.7492 -3.1025 20 1 11.9500 -1.9042 -1.8917 21 6 3.5705 -0.7204 1.2490 22 6 2.0405 -0.7209 1.2493 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2492 30 1 1.6768 -0.2074 -2.1392 31 1 3.9330 0.3071 -1.2497 32 1 3.9334 -1.2342 -2.1397 33 1 3.7176 -2.4693 0.0000 34 1 5.9732 -0.4166 -0.0899 35 1 5.9742 -1.8745 0.9311 36 1 7.6676 -4.1584 -2.3312 37 1 7.6658 -2.7009 -3.3529 38 1 9.8647 -2.0410 -2.4171 39 1 9.8673 -3.4983 -1.3951 40 1 12.9386 -4.7447 -4.7306 41 1 3.9335 0.3074 1.2488 42 1 3.9345 -1.2336 2.1390 43 1 1.6772 -0.2067 2.1391 44 1 1.6776 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812618724.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:49 Heat of formation + Delta-G solvation = -151.504553 kcal Electronic energy + Delta-G solvation = -20648.438123 eV Core-core repulsion = 17563.279145 eV Total energy + Delta-G solvation = -3085.158978 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.57572 -40.43834 -37.73676 -35.63740 -34.82663 -33.42267 -31.72054 -29.60111 -28.16263 -28.15711 -25.17469 -23.82380 -23.35406 -21.54382 -21.35307 -19.45072 -19.22746 -18.29965 -17.62185 -17.09398 -16.32416 -16.19418 -15.69893 -15.56118 -15.04466 -14.84679 -14.74699 -14.48103 -14.17950 -13.79152 -13.49911 -13.34881 -13.15402 -12.93451 -12.77163 -12.65070 -12.42969 -12.24180 -12.19769 -12.03162 -11.92972 -11.86486 -11.80777 -11.50218 -11.46119 -11.37873 -11.04605 -10.97238 -10.79664 -10.78336 -8.32549 -6.36766 1.21624 1.33810 1.35807 1.49667 1.72286 2.33947 3.02755 3.57277 3.66309 3.77668 3.91918 3.99569 4.17203 4.18301 4.29470 4.36733 4.40504 4.46811 4.49727 4.54934 4.63330 4.68913 4.78468 4.85907 4.87315 4.96255 5.00167 5.10428 5.13387 5.16975 5.21745 5.23906 5.26190 5.28278 5.35467 5.39863 5.43542 5.51714 5.57134 5.58692 5.68670 6.20729 6.68542 6.81349 7.28395 8.83015 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.047040 B = 0.003027 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.098769 B = 9247.796983 C = 9511.351056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.066 4.066 3 C -0.146 4.146 4 C -0.104 4.104 5 C -0.116 4.116 6 C -0.076 4.076 7 C 0.062 3.938 8 O -0.355 6.355 9 C 0.467 3.533 10 O -0.544 6.544 11 C -0.092 4.092 12 C 0.002 3.998 13 C -0.532 4.532 14 H 0.051 0.949 15 C 0.014 3.986 16 N -0.942 5.942 17 Si 0.939 3.061 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.259 1.259 21 C -0.112 4.112 22 C -0.102 4.102 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.268 0.732 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.827 10.741 12.232 29.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.066 4.066 3 C -0.203 4.203 4 C -0.142 4.142 5 C -0.154 4.154 6 C -0.095 4.095 7 C -0.011 4.011 8 O -0.271 6.271 9 C 0.313 3.687 10 O -0.434 6.434 11 C -0.129 4.129 12 C -0.036 4.036 13 C -0.570 4.570 14 H 0.069 0.931 15 C -0.184 4.184 16 N -0.582 5.582 17 Si 0.764 3.236 18 H -0.192 1.192 19 H -0.204 1.204 20 H -0.183 1.183 21 C -0.150 4.150 22 C -0.140 4.140 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.491 10.869 12.406 29.528 hybrid contribution 1.093 0.152 0.229 1.127 sum -23.398 11.021 12.635 28.785 Atomic orbital electron populations 1.21841 0.93938 1.01913 1.01969 1.20563 0.95687 0.95459 0.94936 1.21980 1.01180 0.95316 1.01796 1.21572 0.94255 1.00667 0.97698 1.21602 0.96425 1.00334 0.96991 1.21179 0.89887 1.01393 0.97038 1.23344 0.95965 0.94765 0.87037 1.86518 1.23717 1.67060 1.49832 1.24333 0.80441 0.78156 0.85813 1.90605 1.61317 1.46205 1.45312 1.21329 0.96173 1.00668 0.94750 1.19317 0.91628 0.96639 0.95970 1.21340 0.92438 1.31525 1.11659 0.93051 1.25812 1.00027 0.95514 0.97032 1.70020 1.13215 1.42471 1.32523 0.85813 0.78347 0.80112 0.79365 1.19237 1.20376 1.18284 1.21555 0.96683 1.00797 0.95945 1.21549 0.93934 1.00850 0.97618 0.92186 0.92627 0.92547 0.92627 0.92804 0.92265 0.91849 0.91715 0.91829 0.92469 0.90056 0.91800 0.91558 0.86869 0.86923 0.96519 0.96623 0.92270 0.91192 0.91217 0.90820 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.48 71.98 0.61 -0.86 16 2 C -0.07 -0.82 0.77 -52.18 -0.04 -0.86 16 3 C -0.15 -1.82 7.78 71.98 0.56 -1.26 16 4 C -0.10 -1.53 4.73 30.59 0.14 -1.38 16 5 C -0.12 -2.10 4.83 30.59 0.15 -1.96 16 6 C -0.08 -1.41 2.44 -10.80 -0.03 -1.44 16 7 C 0.06 1.55 4.84 71.98 0.35 1.90 16 8 O -0.35 -10.82 9.76 -51.46 -0.50 -11.32 16 9 C 0.47 17.22 7.96 71.24 0.57 17.78 16 10 O -0.54 -23.22 15.73 21.95 0.35 -22.87 16 11 C -0.09 -3.54 5.75 29.85 0.17 -3.37 16 12 C 0.00 0.10 3.33 29.85 0.10 0.20 16 13 C -0.53 -30.39 9.66 25.60 0.25 -30.15 16 14 H 0.05 3.10 7.99 -2.91 -0.02 3.08 16 15 C 0.01 0.83 5.47 84.66 0.46 1.29 16 16 N -0.94 -58.62 13.96 21.45 0.30 -58.32 16 17 Si 0.94 45.87 27.47 68.60 1.88 47.76 16 18 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.26 -12.42 6.54 99.48 0.65 -11.76 16 21 C -0.11 -1.62 4.93 30.59 0.15 -1.47 16 22 C -0.10 -1.23 4.73 30.60 0.14 -1.09 16 23 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.05 0.77 4.81 -2.38 -0.01 0.76 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 1.16 6.43 -2.39 -0.02 1.14 16 32 H 0.06 1.21 7.82 -2.39 -0.02 1.19 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 35 H 0.07 1.65 8.13 -2.39 -0.02 1.63 16 36 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 37 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 38 H 0.02 0.83 7.16 -2.39 -0.02 0.82 16 39 H 0.02 0.77 7.52 -2.39 -0.02 0.75 16 40 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 41 H 0.07 1.01 6.43 -2.39 -0.02 0.99 16 42 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -66.51 341.94 6.50 -60.01 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 0.88 Total: 7.38 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: 3.59 Total: -22.65 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.30 Total: -58.32 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.16 Total: -34.19 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.88 Total: 47.76 kcal Total: -66.51 6.50 -60.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618724.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.491 kcal (2) G-P(sol) polarization free energy of solvation -66.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds