Wall clock time and date at job start Mon Mar 30 2020 01:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47199 * 2 1 4 4 C 1.52999 * 109.47069 * 239.99565 * 2 1 3 5 5 O 1.45206 * 109.46777 * 65.00408 * 4 2 1 6 6 C 1.34224 * 117.00077 * 179.97438 * 5 4 2 7 7 O 1.20833 * 120.00103 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00302 * 180.02562 * 6 5 4 9 9 C 1.52999 * 109.47581 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47606 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47251 * 179.97438 * 10 9 8 12 12 C 1.50705 * 109.46835 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00169 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99658 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99822 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99984 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47099 * 90.00186 * 16 14 12 18 18 H 1.48499 * 109.46984 * 209.99970 * 16 14 12 19 19 H 1.48495 * 109.47185 * 330.00201 * 16 14 12 20 20 C 1.53003 * 109.46755 * 119.99953 * 2 1 3 21 21 C 1.53778 * 113.61673 * 279.13381 * 20 2 1 22 22 C 1.53956 * 87.01963 * 220.05152 * 21 20 2 23 23 C 1.53772 * 87.11288 * 25.36426 * 22 21 20 24 24 H 1.09000 * 109.47048 * 59.99887 * 1 2 3 25 25 H 1.08994 * 109.47199 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46743 * 300.00156 * 1 2 3 27 27 H 1.09000 * 109.47486 * 305.00460 * 4 2 1 28 28 H 1.09001 * 109.47362 * 184.99737 * 4 2 1 29 29 H 1.09009 * 109.46972 * 299.99362 * 8 6 5 30 30 H 1.08995 * 109.47473 * 59.99636 * 8 6 5 31 31 H 1.09005 * 109.46903 * 300.00018 * 9 8 6 32 32 H 1.09000 * 109.47608 * 59.99121 * 9 8 6 33 33 H 1.09002 * 109.46566 * 299.99970 * 10 9 8 34 34 H 1.09000 * 109.47303 * 59.98998 * 10 9 8 35 35 H 1.08997 * 109.47192 * 299.99573 * 11 10 9 36 36 H 1.09003 * 109.46861 * 59.99913 * 11 10 9 37 37 H 0.97002 * 119.99980 * 180.02562 * 15 14 12 38 38 H 1.09004 * 112.85327 * 50.33744 * 20 2 1 39 39 H 1.09003 * 113.61548 * 334.57291 * 21 20 2 40 40 H 1.08997 * 113.61320 * 105.47287 * 21 20 2 41 41 H 1.08998 * 113.53351 * 270.80952 * 22 21 20 42 42 H 1.09007 * 113.74238 * 139.94631 * 22 21 20 43 43 H 1.09005 * 113.61705 * 220.09068 * 23 22 21 44 44 H 1.08995 * 113.61976 * 89.18711 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.6559 0.0286 -2.4318 6 6 2.0298 -0.4728 -3.6194 7 8 2.6577 -1.5039 -3.6692 8 6 1.6675 0.2509 -4.8906 9 6 2.2086 -0.5266 -6.0921 10 6 1.8402 0.2078 -7.3828 11 6 2.3818 -0.5695 -8.5842 12 6 2.0184 0.1537 -9.8555 13 1 1.4576 1.0756 -9.8109 14 6 2.4019 -0.3618 -11.0755 15 7 2.0852 0.2695 -12.1849 16 14 3.3724 -1.9560 -11.1524 17 1 2.4337 -3.1032 -11.2425 18 1 4.2532 -1.9421 -12.3479 19 1 4.2018 -2.0902 -9.9280 20 6 2.0399 -0.7213 1.2493 21 6 2.0344 0.1558 2.5124 22 6 3.3855 -0.4901 2.8694 23 6 3.5733 -0.7444 1.3645 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6053 -1.7199 -1.2951 28 1 3.1263 -0.7995 -1.2056 29 1 0.5830 0.3293 -4.9676 30 1 2.1040 1.2496 -4.8772 31 1 3.2930 -0.6055 -6.0154 32 1 1.7718 -1.5252 -6.1054 33 1 0.7557 0.2862 -7.4592 34 1 2.2766 1.2065 -7.3698 35 1 3.4663 -0.6475 -8.5075 36 1 1.9456 -1.5683 -8.5973 37 1 2.3546 -0.0933 -13.0432 38 1 1.5766 -1.6973 1.3934 39 1 2.1025 1.2234 2.3031 40 1 1.2341 -0.0894 3.2107 41 1 3.2898 -1.4026 3.4578 42 1 4.1095 0.2094 3.2877 43 1 4.0137 -1.7153 1.1373 44 1 4.0629 0.0765 0.8407 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817755156.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:19 Heat of formation + Delta-G solvation = -110.220255 kcal Electronic energy + Delta-G solvation = -19834.099816 eV Core-core repulsion = 16750.731060 eV Total energy + Delta-G solvation = -3083.368756 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.57038 -39.50727 -36.81380 -35.09382 -33.74992 -32.61505 -30.34172 -27.62822 -26.34767 -25.73577 -25.21757 -22.50492 -20.99617 -20.47626 -20.07561 -19.81761 -17.55302 -16.76875 -16.58997 -16.33471 -15.74057 -15.33712 -15.06293 -14.27225 -14.19113 -13.82580 -13.07487 -13.02278 -12.83291 -12.76057 -12.53737 -12.36427 -12.23594 -12.19358 -11.77199 -11.62670 -11.25947 -11.15548 -10.95009 -10.79112 -10.71903 -10.64109 -10.57506 -10.43349 -10.32556 -9.87249 -9.67731 -9.52643 -9.13719 -8.50120 -6.01061 -3.98700 2.27584 2.62813 3.34592 3.41718 3.47200 4.08798 4.18473 4.26910 4.42218 4.49262 4.60060 4.76758 4.84408 4.93339 5.10280 5.17050 5.20667 5.24999 5.29579 5.33597 5.34239 5.36056 5.42952 5.50416 5.55652 5.64584 5.66416 5.78096 5.90129 5.93880 5.96113 6.06704 6.11939 6.33214 6.43309 6.62058 6.76413 6.95769 7.35588 7.48317 7.80457 7.84145 8.57456 9.03939 9.62027 11.12364 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.048267 B = 0.002469 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.970801 B =11339.107819 C =11675.969828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 H 0.082 0.918 4 C 0.070 3.930 5 O -0.360 6.360 6 C 0.459 3.541 7 O -0.509 6.509 8 C -0.112 4.112 9 C -0.111 4.111 10 C -0.102 4.102 11 C -0.015 4.015 12 C -0.520 4.520 13 H 0.071 0.929 14 C 0.064 3.936 15 N -0.905 5.905 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.265 1.265 20 C -0.105 4.105 21 C -0.132 4.132 22 C -0.143 4.143 23 C -0.143 4.143 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.016 0.984 36 H 0.011 0.989 37 H 0.262 0.738 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.888 -0.338 30.922 30.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.099 4.099 3 H 0.100 0.900 4 C -0.004 4.004 5 O -0.277 6.277 6 C 0.303 3.697 7 O -0.396 6.396 8 C -0.150 4.150 9 C -0.149 4.149 10 C -0.140 4.140 11 C -0.053 4.053 12 C -0.558 4.558 13 H 0.090 0.910 14 C -0.137 4.137 15 N -0.544 5.544 16 Si 0.707 3.293 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.189 1.189 20 C -0.124 4.124 21 C -0.170 4.170 22 C -0.181 4.181 23 C -0.180 4.180 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.030 0.970 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.675 -0.668 30.749 30.764 hybrid contribution 0.568 -0.996 -0.156 1.157 sum -0.107 -1.664 30.594 30.639 Atomic orbital electron populations 1.21790 0.94213 1.02023 1.02308 1.21181 0.96904 1.00082 0.91703 0.89956 1.23060 1.00244 0.94978 0.82086 1.86499 1.72827 1.53179 1.15233 1.24166 0.76024 0.84079 0.85452 1.90663 1.37235 1.24036 1.87677 1.21574 1.04218 1.00730 0.88439 1.21601 1.01446 0.99232 0.92603 1.21473 1.00634 0.99019 0.92850 1.19579 0.96166 0.95721 0.93817 1.21174 1.35573 1.09819 0.89207 0.91043 1.25050 0.95664 0.97231 0.95713 1.69919 1.47174 1.39674 0.97660 0.86769 0.80602 0.84188 0.77694 1.20325 1.21448 1.18935 1.22572 0.96290 0.99601 0.93915 1.22956 0.97661 0.99475 0.96895 1.22838 0.97689 1.00992 0.96547 1.22993 0.95951 1.02368 0.96685 0.91724 0.92762 0.92403 0.91420 0.91248 0.87781 0.87773 0.91572 0.91581 0.92595 0.92573 0.96582 0.97022 0.92804 0.88938 0.89925 0.91426 0.90247 0.91410 0.91335 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.07 37.16 0.34 -0.74 16 2 C -0.08 -0.62 2.36 -90.62 -0.21 -0.83 16 3 H 0.08 0.64 7.98 -51.93 -0.41 0.23 16 4 C 0.07 0.72 4.74 37.16 0.18 0.89 16 5 O -0.36 -4.37 9.76 -39.24 -0.38 -4.76 16 6 C 0.46 6.44 7.96 36.00 0.29 6.73 16 7 O -0.51 -8.66 15.73 -18.76 -0.30 -8.95 16 8 C -0.11 -1.45 5.81 -27.89 -0.16 -1.61 16 9 C -0.11 -1.82 4.50 -26.73 -0.12 -1.94 16 10 C -0.10 -1.98 5.15 -26.73 -0.14 -2.12 16 11 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 12 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 13 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 14 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 15 N -0.91 -28.31 13.96 55.43 0.77 -27.53 16 16 Si 0.88 22.27 27.47 -169.99 -4.67 17.60 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 20 C -0.11 -0.68 3.11 -89.80 -0.28 -0.96 16 21 C -0.13 -0.75 7.63 -25.83 -0.20 -0.94 16 22 C -0.14 -0.81 8.09 -25.83 -0.21 -1.02 16 23 C -0.14 -0.93 6.66 -25.92 -0.17 -1.11 16 24 H 0.06 0.54 7.82 -51.93 -0.41 0.13 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.07 0.72 7.33 -51.93 -0.38 0.34 16 29 H 0.10 1.17 8.14 -51.92 -0.42 0.75 16 30 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 32 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 36 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.46 7.99 -51.93 -0.41 0.04 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 LS Contribution 356.10 15.07 5.37 5.37 Total: -1.00 -32.34 356.10 -8.75 -41.08 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -8.30 Total: -5.09 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -1.23 Total: -17.71 kcal Atomic # 7 Polarization: -28.31 SS G_CDS: 0.77 Total: -27.53 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.68 Total: -13.71 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.60 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.34 -8.75 -41.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817755156.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.138 kcal (2) G-P(sol) polarization free energy of solvation -32.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds