Wall clock time and date at job start Mon Mar 30 2020 01:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47199 * 2 1 4 4 C 1.52999 * 109.47069 * 239.99565 * 2 1 3 5 5 O 1.45206 * 109.46777 * 65.00408 * 4 2 1 6 6 C 1.34224 * 117.00077 * 179.97438 * 5 4 2 7 7 O 1.20833 * 120.00103 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00302 * 180.02562 * 6 5 4 9 9 C 1.52999 * 109.47581 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47606 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47251 * 179.97438 * 10 9 8 12 12 C 1.50705 * 109.46835 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00169 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99658 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99822 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99984 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47099 * 90.00186 * 16 14 12 18 18 H 1.48499 * 109.46984 * 209.99970 * 16 14 12 19 19 H 1.48495 * 109.47185 * 330.00201 * 16 14 12 20 20 C 1.53003 * 109.46755 * 119.99953 * 2 1 3 21 21 C 1.53778 * 113.61673 * 279.13381 * 20 2 1 22 22 C 1.53956 * 87.01963 * 220.05152 * 21 20 2 23 23 C 1.53772 * 87.11288 * 25.36426 * 22 21 20 24 24 H 1.09000 * 109.47048 * 59.99887 * 1 2 3 25 25 H 1.08994 * 109.47199 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46743 * 300.00156 * 1 2 3 27 27 H 1.09000 * 109.47486 * 305.00460 * 4 2 1 28 28 H 1.09001 * 109.47362 * 184.99737 * 4 2 1 29 29 H 1.09009 * 109.46972 * 299.99362 * 8 6 5 30 30 H 1.08995 * 109.47473 * 59.99636 * 8 6 5 31 31 H 1.09005 * 109.46903 * 300.00018 * 9 8 6 32 32 H 1.09000 * 109.47608 * 59.99121 * 9 8 6 33 33 H 1.09002 * 109.46566 * 299.99970 * 10 9 8 34 34 H 1.09000 * 109.47303 * 59.98998 * 10 9 8 35 35 H 1.08997 * 109.47192 * 299.99573 * 11 10 9 36 36 H 1.09003 * 109.46861 * 59.99913 * 11 10 9 37 37 H 0.97002 * 119.99980 * 180.02562 * 15 14 12 38 38 H 1.09004 * 112.85327 * 50.33744 * 20 2 1 39 39 H 1.09003 * 113.61548 * 334.57291 * 21 20 2 40 40 H 1.08997 * 113.61320 * 105.47287 * 21 20 2 41 41 H 1.08998 * 113.53351 * 270.80952 * 22 21 20 42 42 H 1.09007 * 113.74238 * 139.94631 * 22 21 20 43 43 H 1.09005 * 113.61705 * 220.09068 * 23 22 21 44 44 H 1.08995 * 113.61976 * 89.18711 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.6559 0.0286 -2.4318 6 6 2.0298 -0.4728 -3.6194 7 8 2.6577 -1.5039 -3.6692 8 6 1.6675 0.2509 -4.8906 9 6 2.2086 -0.5266 -6.0921 10 6 1.8402 0.2078 -7.3828 11 6 2.3818 -0.5695 -8.5842 12 6 2.0184 0.1537 -9.8555 13 1 1.4576 1.0756 -9.8109 14 6 2.4019 -0.3618 -11.0755 15 7 2.0852 0.2695 -12.1849 16 14 3.3724 -1.9560 -11.1524 17 1 2.4337 -3.1032 -11.2425 18 1 4.2532 -1.9421 -12.3479 19 1 4.2018 -2.0902 -9.9280 20 6 2.0399 -0.7213 1.2493 21 6 2.0344 0.1558 2.5124 22 6 3.3855 -0.4901 2.8694 23 6 3.5733 -0.7444 1.3645 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6053 -1.7199 -1.2951 28 1 3.1263 -0.7995 -1.2056 29 1 0.5830 0.3293 -4.9676 30 1 2.1040 1.2496 -4.8772 31 1 3.2930 -0.6055 -6.0154 32 1 1.7718 -1.5252 -6.1054 33 1 0.7557 0.2862 -7.4592 34 1 2.2766 1.2065 -7.3698 35 1 3.4663 -0.6475 -8.5075 36 1 1.9456 -1.5683 -8.5973 37 1 2.3546 -0.0933 -13.0432 38 1 1.5766 -1.6973 1.3934 39 1 2.1025 1.2234 2.3031 40 1 1.2341 -0.0894 3.2107 41 1 3.2898 -1.4026 3.4578 42 1 4.1095 0.2094 3.2877 43 1 4.0137 -1.7153 1.1373 44 1 4.0629 0.0765 0.8407 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817755156.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:19 Heat of formation + Delta-G solvation = -126.398804 kcal Electronic energy + Delta-G solvation = -19834.801370 eV Core-core repulsion = 16750.731060 eV Total energy + Delta-G solvation = -3084.070311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.58960 -40.09572 -37.84992 -36.65875 -34.66950 -34.38557 -32.02579 -28.61033 -27.58769 -26.24901 -26.05085 -24.05694 -21.92956 -21.61881 -21.47752 -20.34216 -18.89759 -18.53064 -17.77871 -17.30571 -16.39543 -16.27023 -16.24482 -15.85852 -15.23559 -14.89061 -14.65540 -14.10598 -13.81487 -13.78313 -13.54218 -13.44303 -13.30933 -13.25526 -12.87393 -12.72653 -12.38107 -12.28521 -12.12940 -11.90117 -11.75918 -11.71975 -11.57135 -11.45801 -11.36049 -11.32513 -11.25064 -11.01365 -10.92187 -10.75534 -8.28999 -6.32161 1.18910 1.35455 1.37014 1.49577 1.66793 2.36366 3.06351 3.47417 3.64185 3.70079 3.85675 3.94015 3.95731 4.01494 4.09355 4.21674 4.27552 4.41974 4.54523 4.57976 4.60710 4.66569 4.74142 4.81101 4.86981 4.88116 4.90031 5.02855 5.07558 5.09578 5.12074 5.16325 5.19258 5.23806 5.34151 5.40495 5.46703 5.59646 5.63058 5.64845 5.68775 6.30055 6.74487 6.76279 7.32496 8.87529 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.048267 B = 0.002469 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.970801 B =11339.107819 C =11675.969828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 H 0.083 0.917 4 C 0.066 3.934 5 O -0.356 6.356 6 C 0.464 3.536 7 O -0.544 6.544 8 C -0.106 4.106 9 C -0.102 4.102 10 C -0.094 4.094 11 C -0.017 4.017 12 C -0.530 4.530 13 H 0.037 0.963 14 C 0.002 3.998 15 N -0.951 5.951 16 Si 0.949 3.051 17 H -0.267 1.267 18 H -0.283 1.283 19 H -0.251 1.251 20 C -0.104 4.104 21 C -0.128 4.128 22 C -0.141 4.141 23 C -0.149 4.149 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.016 0.984 36 H 0.015 0.985 37 H 0.266 0.734 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.757 -0.880 32.985 33.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.091 4.091 3 H 0.102 0.898 4 C -0.007 4.007 5 O -0.272 6.272 6 C 0.309 3.691 7 O -0.434 6.434 8 C -0.143 4.143 9 C -0.139 4.139 10 C -0.132 4.132 11 C -0.055 4.055 12 C -0.568 4.568 13 H 0.055 0.945 14 C -0.195 4.195 15 N -0.592 5.592 16 Si 0.772 3.228 17 H -0.192 1.192 18 H -0.209 1.209 19 H -0.174 1.174 20 C -0.123 4.123 21 C -0.165 4.165 22 C -0.178 4.178 23 C -0.186 4.186 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.556 -1.194 32.843 32.870 hybrid contribution 0.485 -0.752 -0.781 1.188 sum -0.071 -1.946 32.063 32.122 Atomic orbital electron populations 1.21781 0.93782 1.02123 1.02503 1.21173 0.97177 0.99924 0.90875 0.89824 1.23271 1.00160 0.95106 0.82207 1.86494 1.72367 1.53125 1.15254 1.24293 0.75160 0.83430 0.86213 1.90656 1.38973 1.25609 1.88179 1.21497 1.05568 1.00823 0.86425 1.21386 1.01035 0.98945 0.92574 1.21328 1.00661 0.98791 0.92400 1.19579 0.96272 0.95941 0.93681 1.21547 1.34799 1.09003 0.91487 0.94483 1.26021 0.96966 1.01207 0.95300 1.70064 1.48852 1.41805 0.98439 0.85675 0.79299 0.79477 0.78306 1.19237 1.20865 1.17431 1.22581 0.96114 0.99868 0.93722 1.22947 0.97858 0.99410 0.96303 1.22846 0.97816 1.01350 0.95821 1.23025 0.95999 1.01993 0.97581 0.92704 0.92726 0.91026 0.91875 0.91666 0.85570 0.85585 0.92364 0.92291 0.92188 0.92221 0.96612 0.96713 0.92547 0.88699 0.89677 0.90607 0.89718 0.91042 0.91819 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.07 71.98 0.65 -1.23 16 2 C -0.07 -1.01 2.36 -10.79 -0.03 -1.04 16 3 H 0.08 1.16 7.98 -2.39 -0.02 1.14 16 4 C 0.07 1.28 4.74 71.98 0.34 1.62 16 5 O -0.36 -8.09 9.76 -51.35 -0.50 -8.59 16 6 C 0.46 12.29 7.96 71.23 0.57 12.85 16 7 O -0.54 -18.07 15.73 21.94 0.35 -17.72 16 8 C -0.11 -2.48 5.81 29.85 0.17 -2.31 16 9 C -0.10 -3.16 4.50 30.59 0.14 -3.02 16 10 C -0.09 -3.53 5.15 30.59 0.16 -3.37 16 11 C -0.02 -0.83 4.04 29.85 0.12 -0.71 16 12 C -0.53 -31.05 9.66 25.60 0.25 -30.80 16 13 H 0.04 2.35 7.99 -2.91 -0.02 2.32 16 14 C 0.00 0.10 5.47 84.66 0.46 0.56 16 15 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16 16 Si 0.95 45.63 27.47 68.60 1.88 47.51 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 19 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 20 C -0.10 -1.19 3.11 -10.27 -0.03 -1.23 16 21 C -0.13 -1.18 7.63 31.18 0.24 -0.94 16 22 C -0.14 -1.36 8.09 31.18 0.25 -1.10 16 23 C -0.15 -1.79 6.66 31.12 0.21 -1.58 16 24 H 0.05 0.82 7.82 -2.39 -0.02 0.80 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 28 H 0.06 1.32 7.33 -2.39 -0.02 1.30 16 29 H 0.13 2.45 8.14 -2.38 -0.02 2.43 16 30 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.06 1.90 8.10 -2.38 -0.02 1.88 16 32 H 0.06 1.92 8.10 -2.39 -0.02 1.90 16 33 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.02 0.74 7.20 -2.39 -0.02 0.73 16 36 H 0.01 0.69 7.57 -2.39 -0.02 0.67 16 37 H 0.27 15.76 8.31 -92.71 -0.77 14.98 16 38 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 0.76 7.99 -2.39 -0.02 0.74 16 40 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 41 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 43 H 0.06 0.81 8.14 -2.38 -0.02 0.80 16 44 H 0.08 1.01 8.10 -2.39 -0.02 0.99 16 Total: -1.00 -69.57 356.10 6.40 -63.17 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 0.87 Total: 8.10 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: 3.50 Total: -32.29 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: 0.30 Total: -60.17 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.16 Total: -26.32 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.88 Total: 47.51 kcal Total: -69.57 6.40 -63.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817755156.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.225 kcal (2) G-P(sol) polarization free energy of solvation -69.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds