Wall clock time and date at job start Mon Mar 30 2020 01:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46791 * 2 1 4 4 C 1.53002 * 109.46746 * 119.99418 * 2 1 3 5 5 O 1.45206 * 109.47129 * 295.00040 * 4 2 1 6 6 C 1.34232 * 116.99878 * 180.02562 * 5 4 2 7 7 O 1.20825 * 120.00049 * 0.02562 * 6 5 4 8 8 C 1.50695 * 119.99727 * 180.02562 * 6 5 4 9 9 C 1.53009 * 109.47097 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47123 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.46874 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.47208 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99793 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00228 * 180.02562 * 12 11 10 15 15 N 1.31521 * 120.00055 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00206 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47451 * 89.99769 * 16 14 12 18 18 H 1.48502 * 109.47207 * 210.00237 * 16 14 12 19 19 H 1.48507 * 109.47118 * 330.00032 * 16 14 12 20 20 C 1.52994 * 109.47325 * 239.99144 * 2 1 3 21 21 C 1.53785 * 113.61254 * 157.49758 * 20 2 1 22 22 C 1.53781 * 87.07886 * 220.02094 * 21 20 2 23 23 C 1.53776 * 87.08411 * 25.43592 * 22 21 20 24 24 H 1.09001 * 109.47045 * 60.00763 * 1 2 3 25 25 H 1.09002 * 109.47338 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47409 * 300.00677 * 1 2 3 27 27 H 1.09004 * 109.46930 * 175.00154 * 4 2 1 28 28 H 1.09000 * 109.47312 * 55.00097 * 4 2 1 29 29 H 1.09003 * 109.47178 * 299.99681 * 8 6 5 30 30 H 1.09001 * 109.47646 * 60.00176 * 8 6 5 31 31 H 1.08995 * 109.46886 * 300.00093 * 9 8 6 32 32 H 1.09001 * 109.46838 * 59.99548 * 9 8 6 33 33 H 1.08995 * 109.47593 * 299.99999 * 10 9 8 34 34 H 1.08997 * 109.46864 * 60.00221 * 10 9 8 35 35 H 1.09000 * 109.47785 * 300.00701 * 11 10 9 36 36 H 1.09010 * 109.47160 * 60.00765 * 11 10 9 37 37 H 0.96993 * 119.99814 * 180.02562 * 15 14 12 38 38 H 1.08998 * 112.85556 * 288.80690 * 20 2 1 39 39 H 1.08998 * 113.61467 * 334.56854 * 21 20 2 40 40 H 1.09004 * 113.61269 * 105.47490 * 21 20 2 41 41 H 1.08998 * 113.61667 * 270.88312 * 22 21 20 42 42 H 1.09002 * 113.68701 * 139.99491 * 22 21 20 43 43 H 1.09007 * 113.61394 * 220.01964 * 23 22 21 44 44 H 1.08994 * 113.69265 * 89.12356 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 8 1.6558 0.0289 2.4319 6 6 2.0297 -0.4724 3.6196 7 8 2.6575 -1.5035 3.6695 8 6 1.6663 0.2508 4.8907 9 6 2.2086 -0.5258 6.0923 10 6 1.8402 0.2088 7.3828 11 6 2.3820 -0.5682 8.5843 12 6 2.0197 0.1557 9.8555 13 1 1.4587 1.0775 9.8109 14 6 2.4044 -0.3587 11.0755 15 7 3.0879 -1.4810 11.1298 16 14 1.9547 0.5381 12.6511 17 1 0.6398 0.0510 13.1400 18 1 2.9926 0.2797 13.6813 19 1 1.8742 1.9969 12.3846 20 6 2.0401 -0.7214 -1.2491 21 6 3.4728 -0.3278 -1.6459 22 6 2.9923 -0.3576 -3.1064 23 6 1.5813 -0.0725 -2.5657 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 3.1263 -0.7994 1.2058 28 1 1.6053 -1.7197 1.2954 29 1 2.1020 1.2499 4.8776 30 1 0.5817 0.3285 4.9674 31 1 1.7733 -1.5250 6.1056 32 1 3.2932 -0.6031 6.0155 33 1 2.2758 1.2078 7.3693 34 1 0.7557 0.2863 7.4598 35 1 1.9461 -1.5671 8.5977 36 1 3.4666 -0.6460 8.5076 37 1 3.3582 -1.8431 11.9881 38 1 1.8759 -1.7983 -1.2127 39 1 3.7640 0.6647 -1.3022 40 1 4.2153 -1.0917 -1.4148 41 1 3.0898 -1.3353 -3.5783 42 1 3.3972 0.4494 -3.7171 43 1 0.7967 -0.6303 -3.0772 44 1 1.3540 0.9895 -2.4731 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817755157.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:22 Heat of formation + Delta-G solvation = -113.523140 kcal Electronic energy + Delta-G solvation = -19743.658083 eV Core-core repulsion = 16660.146103 eV Total energy + Delta-G solvation = -3083.511980 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.50207 -39.49168 -36.75749 -34.95308 -33.69910 -32.65101 -29.95465 -27.53805 -26.18227 -25.59049 -25.17775 -22.69184 -20.97240 -20.55906 -20.01283 -19.74775 -17.45196 -16.71257 -16.33747 -16.15205 -15.64326 -15.31318 -14.97863 -14.44325 -14.14545 -13.80892 -13.08338 -12.94094 -12.83876 -12.69340 -12.57776 -12.21870 -12.02417 -11.76279 -11.65042 -11.55486 -11.22495 -10.99943 -10.87980 -10.71139 -10.63370 -10.57641 -10.53143 -10.44998 -10.40037 -10.22274 -9.63790 -9.27485 -9.01103 -8.30946 -5.95744 -3.98285 2.34518 2.68947 3.34213 3.40249 3.43543 4.12469 4.20933 4.30422 4.45413 4.48934 4.61867 4.81675 4.87861 4.97407 5.14349 5.24512 5.29141 5.32534 5.33858 5.36250 5.38712 5.39719 5.45830 5.52396 5.59160 5.66313 5.72545 5.82228 5.94005 5.98058 6.07601 6.14153 6.21920 6.45460 6.51712 6.78293 6.96525 7.17425 7.73036 7.87865 7.88007 8.05208 8.46895 9.09291 9.65435 11.15584 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.061406 B = 0.002279 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.873145 B =12283.265691 C =12500.449658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 H 0.082 0.918 4 C 0.070 3.930 5 O -0.361 6.361 6 C 0.459 3.541 7 O -0.507 6.507 8 C -0.112 4.112 9 C -0.108 4.108 10 C -0.110 4.110 11 C 0.019 3.981 12 C -0.520 4.520 13 H 0.055 0.945 14 C 0.054 3.946 15 N -0.895 5.895 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.106 4.106 21 C -0.141 4.141 22 C -0.144 4.144 23 C -0.132 4.132 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.482 3.776 -28.339 28.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 H 0.100 0.900 4 C -0.003 4.003 5 O -0.278 6.278 6 C 0.302 3.698 7 O -0.394 6.394 8 C -0.149 4.149 9 C -0.146 4.146 10 C -0.148 4.148 11 C -0.018 4.018 12 C -0.559 4.559 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.535 5.535 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.124 4.124 21 C -0.178 4.178 22 C -0.181 4.181 23 C -0.169 4.169 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.070 0.930 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.203 3.330 -28.236 28.612 hybrid contribution -0.095 0.216 0.880 0.911 sum -3.298 3.546 -27.356 27.782 Atomic orbital electron populations 1.21793 0.94230 1.02052 1.02259 1.21184 0.96881 1.00094 0.91679 0.89988 1.23055 1.00205 0.94953 0.82137 1.86502 1.72876 1.53212 1.15239 1.24191 0.76073 0.84122 0.85407 1.90667 1.37131 1.23980 1.87632 1.21601 1.04059 1.00712 0.88564 1.21573 1.01442 0.99203 0.92377 1.21647 1.00149 0.99005 0.93951 1.19103 0.96379 0.95344 0.90930 1.21275 1.34883 1.08427 0.91269 0.92688 1.25049 0.95271 0.95084 0.99236 1.69975 1.38394 1.19881 1.25221 0.86596 0.78081 0.80074 0.83238 1.20709 1.21265 1.19904 1.22558 0.96466 1.00119 0.93303 1.23014 0.96370 1.02104 0.96327 1.22809 0.96853 1.01941 0.96518 1.22899 0.96957 1.01136 0.95923 0.92371 0.92760 0.91765 0.91349 0.91412 0.87947 0.87943 0.91580 0.91582 0.93205 0.93216 0.96550 0.96542 0.93039 0.88981 0.89886 0.91392 0.90248 0.91453 0.91455 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.89 37.16 0.33 -0.78 16 2 C -0.08 -0.64 2.38 -90.62 -0.22 -0.85 16 3 H 0.08 0.66 7.94 -51.93 -0.41 0.25 16 4 C 0.07 0.75 4.84 37.16 0.18 0.93 16 5 O -0.36 -4.56 9.76 -39.26 -0.38 -4.94 16 6 C 0.46 6.75 7.96 36.00 0.29 7.03 16 7 O -0.51 -9.05 15.73 -18.75 -0.29 -9.34 16 8 C -0.11 -1.53 5.81 -27.88 -0.16 -1.69 16 9 C -0.11 -1.91 4.50 -26.73 -0.12 -2.03 16 10 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 11 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 12 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 13 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 14 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 16 Si 0.89 21.92 29.54 -169.99 -5.02 16.89 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 C -0.11 -0.72 3.13 -89.81 -0.28 -1.00 16 21 C -0.14 -0.93 7.63 -25.92 -0.20 -1.13 16 22 C -0.14 -0.82 8.08 -25.92 -0.21 -1.03 16 23 C -0.13 -0.76 6.68 -25.92 -0.17 -0.94 16 24 H 0.06 0.37 7.45 -51.93 -0.39 -0.01 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.55 7.82 -51.93 -0.41 0.14 16 27 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 28 H 0.07 0.74 8.13 -51.93 -0.42 0.31 16 29 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 32 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.55 7.96 -51.93 -0.41 0.13 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 LS Contribution 359.73 15.07 5.42 5.42 Total: -1.00 -32.05 359.73 -9.13 -41.18 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -8.34 Total: -5.18 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -1.25 Total: -17.27 kcal Atomic # 7 Polarization: -27.49 SS G_CDS: 0.74 Total: -26.75 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.68 Total: -14.28 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.05 -9.13 -41.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817755157.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.347 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds