Wall clock time and date at job start Mon Mar 30 2020 01:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46791 * 2 1 4 4 C 1.53002 * 109.46746 * 119.99418 * 2 1 3 5 5 O 1.45206 * 109.47129 * 295.00040 * 4 2 1 6 6 C 1.34232 * 116.99878 * 180.02562 * 5 4 2 7 7 O 1.20825 * 120.00049 * 0.02562 * 6 5 4 8 8 C 1.50695 * 119.99727 * 180.02562 * 6 5 4 9 9 C 1.53009 * 109.47097 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47123 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.46874 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.47208 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99793 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00228 * 180.02562 * 12 11 10 15 15 N 1.31521 * 120.00055 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00206 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47451 * 89.99769 * 16 14 12 18 18 H 1.48502 * 109.47207 * 210.00237 * 16 14 12 19 19 H 1.48507 * 109.47118 * 330.00032 * 16 14 12 20 20 C 1.52994 * 109.47325 * 239.99144 * 2 1 3 21 21 C 1.53785 * 113.61254 * 157.49758 * 20 2 1 22 22 C 1.53781 * 87.07886 * 220.02094 * 21 20 2 23 23 C 1.53776 * 87.08411 * 25.43592 * 22 21 20 24 24 H 1.09001 * 109.47045 * 60.00763 * 1 2 3 25 25 H 1.09002 * 109.47338 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47409 * 300.00677 * 1 2 3 27 27 H 1.09004 * 109.46930 * 175.00154 * 4 2 1 28 28 H 1.09000 * 109.47312 * 55.00097 * 4 2 1 29 29 H 1.09003 * 109.47178 * 299.99681 * 8 6 5 30 30 H 1.09001 * 109.47646 * 60.00176 * 8 6 5 31 31 H 1.08995 * 109.46886 * 300.00093 * 9 8 6 32 32 H 1.09001 * 109.46838 * 59.99548 * 9 8 6 33 33 H 1.08995 * 109.47593 * 299.99999 * 10 9 8 34 34 H 1.08997 * 109.46864 * 60.00221 * 10 9 8 35 35 H 1.09000 * 109.47785 * 300.00701 * 11 10 9 36 36 H 1.09010 * 109.47160 * 60.00765 * 11 10 9 37 37 H 0.96993 * 119.99814 * 180.02562 * 15 14 12 38 38 H 1.08998 * 112.85556 * 288.80690 * 20 2 1 39 39 H 1.08998 * 113.61467 * 334.56854 * 21 20 2 40 40 H 1.09004 * 113.61269 * 105.47490 * 21 20 2 41 41 H 1.08998 * 113.61667 * 270.88312 * 22 21 20 42 42 H 1.09002 * 113.68701 * 139.99491 * 22 21 20 43 43 H 1.09007 * 113.61394 * 220.01964 * 23 22 21 44 44 H 1.08994 * 113.69265 * 89.12356 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 8 1.6558 0.0289 2.4319 6 6 2.0297 -0.4724 3.6196 7 8 2.6575 -1.5035 3.6695 8 6 1.6663 0.2508 4.8907 9 6 2.2086 -0.5258 6.0923 10 6 1.8402 0.2088 7.3828 11 6 2.3820 -0.5682 8.5843 12 6 2.0197 0.1557 9.8555 13 1 1.4587 1.0775 9.8109 14 6 2.4044 -0.3587 11.0755 15 7 3.0879 -1.4810 11.1298 16 14 1.9547 0.5381 12.6511 17 1 0.6398 0.0510 13.1400 18 1 2.9926 0.2797 13.6813 19 1 1.8742 1.9969 12.3846 20 6 2.0401 -0.7214 -1.2491 21 6 3.4728 -0.3278 -1.6459 22 6 2.9923 -0.3576 -3.1064 23 6 1.5813 -0.0725 -2.5657 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 3.1263 -0.7994 1.2058 28 1 1.6053 -1.7197 1.2954 29 1 2.1020 1.2499 4.8776 30 1 0.5817 0.3285 4.9674 31 1 1.7733 -1.5250 6.1056 32 1 3.2932 -0.6031 6.0155 33 1 2.2758 1.2078 7.3693 34 1 0.7557 0.2863 7.4598 35 1 1.9461 -1.5671 8.5977 36 1 3.4666 -0.6460 8.5076 37 1 3.3582 -1.8431 11.9881 38 1 1.8759 -1.7983 -1.2127 39 1 3.7640 0.6647 -1.3022 40 1 4.2153 -1.0917 -1.4148 41 1 3.0898 -1.3353 -3.5783 42 1 3.3972 0.4494 -3.7171 43 1 0.7967 -0.6303 -3.0772 44 1 1.3540 0.9895 -2.4731 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817755157.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:21 Heat of formation + Delta-G solvation = -129.019489 kcal Electronic energy + Delta-G solvation = -19744.330055 eV Core-core repulsion = 16660.146103 eV Total energy + Delta-G solvation = -3084.183952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.59078 -40.10274 -37.85865 -36.62862 -34.68564 -34.36611 -31.66998 -28.48391 -27.51365 -26.19802 -26.07945 -24.35975 -22.06517 -21.61166 -21.46021 -20.31025 -18.61793 -18.36508 -17.78654 -17.32424 -16.49912 -16.30129 -16.22833 -15.85457 -15.19810 -14.75041 -14.56135 -14.06473 -13.85293 -13.59320 -13.52420 -13.34271 -13.33006 -13.23283 -12.83095 -12.55982 -12.36161 -12.27811 -12.19700 -12.18500 -11.90029 -11.67137 -11.58063 -11.38534 -11.37545 -11.30398 -11.12420 -10.99255 -10.91617 -10.54403 -8.18460 -6.30235 1.18550 1.41028 1.43067 1.54134 1.66388 2.42397 3.14413 3.50138 3.63172 3.70604 3.86481 3.95060 3.97032 4.02925 4.08860 4.18585 4.27842 4.43353 4.54675 4.61425 4.63990 4.71215 4.78255 4.85027 4.86805 4.89142 4.89685 5.03492 5.08992 5.13661 5.14381 5.17022 5.29883 5.32432 5.36982 5.41415 5.47733 5.57147 5.63375 5.77899 5.88471 6.25696 6.74587 6.88255 7.39271 8.93693 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.061406 B = 0.002279 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.873145 B =12283.265691 C =12500.449658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 H 0.085 0.915 4 C 0.066 3.934 5 O -0.354 6.354 6 C 0.463 3.537 7 O -0.546 6.546 8 C -0.103 4.103 9 C -0.100 4.100 10 C -0.096 4.096 11 C 0.018 3.982 12 C -0.541 4.541 13 H 0.066 0.934 14 C -0.008 4.008 15 N -0.937 5.937 16 Si 0.969 3.031 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.259 1.259 20 C -0.107 4.107 21 C -0.146 4.146 22 C -0.141 4.141 23 C -0.126 4.126 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.063 0.937 35 H -0.014 1.014 36 H -0.014 1.014 37 H 0.263 0.737 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.801 5.783 -29.229 30.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.090 4.090 3 H 0.103 0.897 4 C -0.008 4.008 5 O -0.270 6.270 6 C 0.308 3.692 7 O -0.437 6.437 8 C -0.140 4.140 9 C -0.138 4.138 10 C -0.133 4.133 11 C -0.019 4.019 12 C -0.579 4.579 13 H 0.085 0.915 14 C -0.205 4.205 15 N -0.578 5.578 16 Si 0.793 3.207 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.183 1.183 20 C -0.126 4.126 21 C -0.183 4.183 22 C -0.179 4.179 23 C -0.164 4.164 24 H 0.092 0.908 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.005 0.995 36 H 0.005 0.995 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.538 5.362 -29.156 29.990 hybrid contribution 0.345 -0.453 1.106 1.244 sum -4.193 4.909 -28.050 28.783 Atomic orbital electron populations 1.21786 0.93718 1.02103 1.02572 1.21176 0.97219 0.99954 0.90684 0.89716 1.23284 1.00061 0.95128 0.82316 1.86495 1.72332 1.53063 1.15158 1.24341 0.75140 0.83418 0.86289 1.90663 1.39051 1.25756 1.88188 1.21495 1.05611 1.00761 0.86102 1.21353 1.00504 0.98773 0.93192 1.21439 1.00680 0.98779 0.92452 1.19064 0.94522 0.94767 0.93574 1.21756 1.34873 1.08942 0.92309 0.91544 1.26090 0.95038 0.95909 1.03455 1.70128 1.39635 1.21697 1.26326 0.85384 0.77908 0.79255 0.78105 1.19753 1.20996 1.18347 1.22571 0.96741 1.00034 0.93228 1.23056 0.96151 1.01923 0.97219 1.22812 0.96723 1.02400 0.95936 1.22891 0.97155 1.01395 0.94919 0.90828 0.92862 0.92667 0.91904 0.91930 0.85297 0.85280 0.93211 0.93220 0.91808 0.91795 0.99526 0.99529 0.92877 0.89151 0.89892 0.91963 0.89908 0.90866 0.90787 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.89 71.98 0.64 -1.32 16 2 C -0.07 -1.05 2.38 -10.79 -0.03 -1.08 16 3 H 0.08 1.22 7.94 -2.39 -0.02 1.20 16 4 C 0.07 1.36 4.84 71.98 0.35 1.71 16 5 O -0.35 -8.48 9.76 -51.44 -0.50 -8.98 16 6 C 0.46 13.20 7.96 71.23 0.57 13.77 16 7 O -0.55 -19.73 15.73 21.97 0.35 -19.39 16 8 C -0.10 -2.59 5.81 29.85 0.17 -2.41 16 9 C -0.10 -3.52 4.50 30.60 0.14 -3.38 16 10 C -0.10 -3.84 5.15 30.59 0.16 -3.68 16 11 C 0.02 0.97 4.97 29.85 0.15 1.12 16 12 C -0.54 -31.18 9.11 25.60 0.23 -30.95 16 13 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 14 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 15 N -0.94 -58.78 13.29 21.45 0.28 -58.50 16 16 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 20 C -0.11 -1.32 3.13 -10.27 -0.03 -1.35 16 21 C -0.15 -1.79 7.63 31.12 0.24 -1.55 16 22 C -0.14 -1.39 8.08 31.12 0.25 -1.14 16 23 C -0.13 -1.21 6.68 31.12 0.21 -1.00 16 24 H 0.07 0.77 7.45 -2.39 -0.02 0.76 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.05 0.85 7.82 -2.39 -0.02 0.83 16 27 H 0.06 1.37 8.13 -2.38 -0.02 1.35 16 28 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 29 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.05 1.88 8.10 -2.39 -0.02 1.86 16 32 H 0.05 1.88 8.10 -2.39 -0.02 1.86 16 33 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 35 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 36 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 37 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 38 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.08 1.01 7.96 -2.39 -0.02 0.99 16 40 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 41 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 44 H 0.09 0.77 8.09 -2.39 -0.02 0.75 16 Total: -1.00 -70.05 359.73 6.58 -63.46 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 0.92 Total: 7.90 kcal Atomic # 6 Polarization: -34.78 SS G_CDS: 3.51 Total: -31.28 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.28 Total: -58.50 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.16 Total: -28.37 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -70.05 6.58 -63.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817755157.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.556 kcal (2) G-P(sol) polarization free energy of solvation -70.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds