Wall clock time and date at job start Mon Mar 30 2020 01:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00071 * 2 1 4 4 H 1.48499 * 109.47468 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46874 * 299.99935 * 3 2 1 6 6 H 1.48503 * 109.46780 * 59.99786 * 3 2 1 7 7 C 1.37875 * 120.00450 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00519 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99665 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47105 * 179.97438 * 9 7 2 11 11 C 1.46896 * 110.99987 * 180.02562 * 10 9 7 12 12 C 1.53119 * 109.52557 * 205.00317 * 11 10 9 13 13 C 1.53042 * 109.28106 * 182.43993 * 12 11 10 14 14 N 1.46846 * 109.51860 * 59.17961 * 13 12 11 15 15 C 1.46905 * 110.99633 * 174.15859 * 14 13 12 16 16 C 1.53005 * 109.46721 * 75.56344 * 15 14 13 17 17 H 1.08997 * 109.87446 * 53.09185 * 16 15 14 18 18 C 1.54102 * 109.87577 * 174.09325 * 16 15 14 19 19 C 1.54808 * 104.18735 * 121.45140 * 18 16 15 20 20 C 1.54999 * 102.09200 * 20.87894 * 19 18 16 21 21 O 1.43744 * 109.87567 * 292.07505 * 16 15 14 22 22 C 1.46846 * 111.20138 * 298.25296 * 14 13 12 23 23 C 1.53038 * 109.52020 * 61.74754 * 22 14 13 24 24 H 0.96998 * 119.99979 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.46847 * 60.00431 * 9 7 2 26 26 H 1.09001 * 109.47713 * 300.00409 * 9 7 2 27 27 H 1.00899 * 110.99752 * 56.05264 * 10 9 7 28 28 H 1.09001 * 109.57670 * 325.16091 * 11 10 9 29 29 H 1.08997 * 109.50400 * 62.49771 * 12 11 10 30 30 H 1.08995 * 109.53330 * 302.40432 * 12 11 10 31 31 H 1.08992 * 109.46363 * 299.16439 * 13 12 11 32 32 H 1.08996 * 109.45978 * 179.19109 * 13 12 11 33 33 H 1.08994 * 109.47412 * 315.56253 * 15 14 13 34 34 H 1.09004 * 109.47152 * 195.55527 * 15 14 13 35 35 H 1.08995 * 110.48787 * 240.12962 * 18 16 15 36 36 H 1.09004 * 110.48725 * 2.77699 * 18 16 15 37 37 H 1.08996 * 110.91010 * 139.07662 * 19 18 16 38 38 H 1.09003 * 110.91203 * 262.68339 * 19 18 16 39 39 H 1.09005 * 110.61723 * 81.48019 * 20 19 18 40 40 H 1.08998 * 110.61617 * 204.31316 * 20 19 18 41 41 H 1.08994 * 109.46492 * 181.75606 * 22 14 13 42 42 H 1.09002 * 109.46654 * 301.73514 * 22 14 13 43 43 H 1.08999 * 109.50587 * 180.88429 * 23 22 14 44 44 H 1.09000 * 109.50405 * 60.76180 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5055 -4.9070 -0.0024 12 6 2.4115 -5.9808 0.6064 13 6 1.7005 -7.3347 0.5474 14 7 1.3898 -7.6653 -0.8493 15 6 0.8316 -9.0198 -0.9579 16 6 -0.6204 -9.0131 -0.4755 17 1 -1.1829 -8.2434 -1.0039 18 6 -1.2610 -10.3927 -0.7228 19 6 -1.7079 -10.8611 0.6835 20 6 -1.7780 -9.5238 1.4640 21 8 -0.6640 -8.7659 0.9398 22 6 0.4827 -6.6733 -1.4406 23 6 1.1573 -5.2996 -1.4409 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 2.8411 -3.5490 0.7792 28 1 0.5906 -4.8266 0.5847 29 1 2.6281 -5.7284 1.6444 30 1 3.3430 -6.0340 0.0429 31 1 0.7764 -7.2850 1.1231 32 1 2.3488 -8.1039 0.9670 33 1 1.4157 -9.7040 -0.3426 34 1 0.8674 -9.3452 -1.9976 35 1 -2.1213 -10.3006 -1.3855 36 1 -0.5288 -11.0840 -1.1403 37 1 -2.6867 -11.3387 0.6416 38 1 -0.9686 -11.5302 1.1239 39 1 -2.7181 -9.0103 1.2621 40 1 -1.6587 -9.6969 2.5335 41 1 0.2466 -6.9621 -2.4647 42 1 -0.4358 -6.6267 -0.8555 43 1 0.4779 -4.5606 -1.8655 44 1 2.0688 -5.3420 -2.0373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819063193.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:46 Heat of formation + Delta-G solvation = -49.741043 kcal Electronic energy + Delta-G solvation = -21284.374310 eV Core-core repulsion = 18235.920881 eV Total energy + Delta-G solvation = -3048.453430 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.12331 -38.34884 -35.40183 -32.94964 -32.39825 -31.25285 -30.51693 -29.11442 -26.46509 -24.81262 -23.19451 -22.66953 -21.83980 -21.24534 -20.69693 -19.07977 -16.86756 -16.43576 -16.13154 -15.65099 -15.12240 -14.74264 -14.59724 -14.47846 -13.89915 -13.84665 -13.56581 -13.14944 -12.58809 -12.42740 -12.18577 -12.15924 -11.99883 -11.68913 -11.49664 -11.33945 -11.16878 -11.01853 -10.93688 -10.80690 -10.65309 -10.45370 -10.11325 -9.99427 -9.88492 -9.58129 -9.05517 -8.43385 -8.06588 -7.18624 -5.98262 -3.99659 3.34209 3.41151 3.46881 3.58495 4.10995 4.33209 4.45854 4.47554 4.63406 4.78646 4.97881 5.10081 5.15607 5.21665 5.31963 5.34822 5.37641 5.39301 5.48491 5.54466 5.55016 5.66968 5.70889 5.77219 5.79858 5.92253 6.06867 6.11423 6.17669 6.29633 6.41885 6.49767 6.71004 6.71587 6.90385 7.25799 7.29793 7.37023 7.50680 7.86367 8.20866 8.50987 8.71591 9.10737 9.65126 11.12947 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036775 B = 0.003477 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.211223 B = 8049.883877 C = 8286.558735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.511 4.511 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.686 5.686 11 C 0.088 3.912 12 C -0.117 4.117 13 C 0.059 3.941 14 N -0.531 5.531 15 C 0.058 3.942 16 C 0.034 3.966 17 H 0.074 0.926 18 C -0.149 4.149 19 C -0.154 4.154 20 C 0.042 3.958 21 O -0.365 6.365 22 C 0.054 3.946 23 C -0.101 4.101 24 H 0.260 0.740 25 H 0.027 0.973 26 H -0.016 1.016 27 H 0.328 0.672 28 H 0.029 0.971 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.036 0.964 43 H 0.066 0.934 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.058 -23.122 0.077 23.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.550 4.550 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.316 5.316 11 C -0.023 4.023 12 C -0.156 4.156 13 C -0.069 4.069 14 N -0.254 5.254 15 C -0.071 4.071 16 C -0.025 4.025 17 H 0.092 0.908 18 C -0.187 4.187 19 C -0.191 4.191 20 C -0.035 4.035 21 O -0.284 6.284 22 C -0.074 4.074 23 C -0.139 4.139 24 H 0.069 0.931 25 H 0.045 0.955 26 H 0.002 0.998 27 H 0.145 0.855 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.054 0.946 43 H 0.084 0.916 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.522 -22.805 -0.759 22.957 hybrid contribution -1.054 0.751 1.243 1.794 sum -3.576 -22.055 0.484 22.348 Atomic orbital electron populations 1.69978 1.06078 1.26556 1.51258 1.24997 0.94868 0.99349 0.95468 0.86442 0.80109 0.83418 0.77439 1.19641 1.21030 1.21160 1.21258 0.93563 0.90319 1.49841 0.91933 1.19581 0.90615 0.87466 0.95566 1.60673 1.21045 1.01075 1.48845 1.21444 0.95236 0.90339 0.95259 1.21788 0.99692 0.93825 1.00252 1.22141 0.99783 0.96753 0.88186 1.62153 1.43584 1.01156 1.18520 1.22485 0.91250 0.92056 1.01287 1.23691 0.99168 0.96316 0.83327 0.90848 1.22952 1.01130 0.96917 0.97713 1.23102 1.02154 0.98298 0.95584 1.23587 0.90537 0.90370 0.98981 1.89030 1.49721 1.69263 1.20425 1.22174 0.93993 0.92664 0.98593 1.21539 1.01054 0.93706 0.97616 0.93057 0.95462 0.99848 0.85521 0.95295 0.92204 0.90814 0.92786 0.91654 0.90392 0.89662 0.90809 0.90295 0.90445 0.90587 0.92384 0.89167 0.91330 0.94626 0.91568 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.29 55.43 0.74 -26.74 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 22.16 29.54 -169.99 -5.02 17.13 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.51 -14.92 9.32 -34.44 -0.32 -15.24 16 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 9 C 0.19 5.29 5.24 -4.97 -0.03 5.27 16 10 N -0.69 -15.47 6.30 -107.85 -0.68 -16.15 16 11 C 0.09 1.68 2.56 -67.59 -0.17 1.50 16 12 C -0.12 -1.87 5.36 -26.65 -0.14 -2.01 16 13 C 0.06 0.85 4.96 -3.83 -0.02 0.83 16 14 N -0.53 -7.20 4.86 -234.67 -1.14 -8.34 16 15 C 0.06 0.62 5.06 -3.82 -0.02 0.60 16 16 C 0.03 0.36 2.90 -26.15 -0.08 0.28 16 17 H 0.07 0.84 6.04 -51.93 -0.31 0.52 16 18 C -0.15 -1.13 6.64 -25.20 -0.17 -1.30 16 19 C -0.15 -1.10 7.16 -24.72 -0.18 -1.27 16 20 C 0.04 0.38 7.72 38.21 0.29 0.67 16 21 O -0.37 -4.45 8.54 -35.23 -0.30 -4.75 16 22 C 0.05 0.78 4.51 -3.83 -0.02 0.76 16 23 C -0.10 -1.78 5.59 -26.65 -0.15 -1.93 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.03 0.80 7.51 -51.92 -0.39 0.41 16 26 H -0.02 -0.47 8.06 -51.93 -0.42 -0.89 16 27 H 0.33 7.09 8.36 -39.29 -0.33 6.76 16 28 H 0.03 0.61 7.80 -51.93 -0.41 0.20 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.05 0.84 5.88 -51.93 -0.31 0.53 16 32 H 0.06 0.86 7.96 -51.93 -0.41 0.44 16 33 H 0.08 0.80 7.88 -51.93 -0.41 0.40 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.52 7.70 -51.93 -0.40 0.12 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 42 H 0.04 0.54 6.43 -51.93 -0.33 0.21 16 43 H 0.07 1.27 7.54 -51.93 -0.39 0.88 16 44 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 335.00 15.07 5.05 5.05 Total: -1.00 -31.39 335.00 -10.33 -41.71 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -7.88 Total: 2.42 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -1.09 Total: -10.35 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -1.08 Total: -51.22 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.30 Total: -4.75 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.39 -10.33 -41.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819063193.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.028 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds