Wall clock time and date at job start Mon Mar 30 2020 01:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00071 * 2 1 4 4 H 1.48499 * 109.47468 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46874 * 299.99935 * 3 2 1 6 6 H 1.48503 * 109.46780 * 59.99786 * 3 2 1 7 7 C 1.37875 * 120.00450 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00519 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99665 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47105 * 179.97438 * 9 7 2 11 11 C 1.46896 * 110.99987 * 180.02562 * 10 9 7 12 12 C 1.53119 * 109.52557 * 205.00317 * 11 10 9 13 13 C 1.53042 * 109.28106 * 182.43993 * 12 11 10 14 14 N 1.46846 * 109.51860 * 59.17961 * 13 12 11 15 15 C 1.46905 * 110.99633 * 174.15859 * 14 13 12 16 16 C 1.53005 * 109.46721 * 75.56344 * 15 14 13 17 17 H 1.08997 * 109.87446 * 53.09185 * 16 15 14 18 18 C 1.54102 * 109.87577 * 174.09325 * 16 15 14 19 19 C 1.54808 * 104.18735 * 121.45140 * 18 16 15 20 20 C 1.54999 * 102.09200 * 20.87894 * 19 18 16 21 21 O 1.43744 * 109.87567 * 292.07505 * 16 15 14 22 22 C 1.46846 * 111.20138 * 298.25296 * 14 13 12 23 23 C 1.53038 * 109.52020 * 61.74754 * 22 14 13 24 24 H 0.96998 * 119.99979 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.46847 * 60.00431 * 9 7 2 26 26 H 1.09001 * 109.47713 * 300.00409 * 9 7 2 27 27 H 1.00899 * 110.99752 * 56.05264 * 10 9 7 28 28 H 1.09001 * 109.57670 * 325.16091 * 11 10 9 29 29 H 1.08997 * 109.50400 * 62.49771 * 12 11 10 30 30 H 1.08995 * 109.53330 * 302.40432 * 12 11 10 31 31 H 1.08992 * 109.46363 * 299.16439 * 13 12 11 32 32 H 1.08996 * 109.45978 * 179.19109 * 13 12 11 33 33 H 1.08994 * 109.47412 * 315.56253 * 15 14 13 34 34 H 1.09004 * 109.47152 * 195.55527 * 15 14 13 35 35 H 1.08995 * 110.48787 * 240.12962 * 18 16 15 36 36 H 1.09004 * 110.48725 * 2.77699 * 18 16 15 37 37 H 1.08996 * 110.91010 * 139.07662 * 19 18 16 38 38 H 1.09003 * 110.91203 * 262.68339 * 19 18 16 39 39 H 1.09005 * 110.61723 * 81.48019 * 20 19 18 40 40 H 1.08998 * 110.61617 * 204.31316 * 20 19 18 41 41 H 1.08994 * 109.46492 * 181.75606 * 22 14 13 42 42 H 1.09002 * 109.46654 * 301.73514 * 22 14 13 43 43 H 1.08999 * 109.50587 * 180.88429 * 23 22 14 44 44 H 1.09000 * 109.50405 * 60.76180 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5055 -4.9070 -0.0024 12 6 2.4115 -5.9808 0.6064 13 6 1.7005 -7.3347 0.5474 14 7 1.3898 -7.6653 -0.8493 15 6 0.8316 -9.0198 -0.9579 16 6 -0.6204 -9.0131 -0.4755 17 1 -1.1829 -8.2434 -1.0039 18 6 -1.2610 -10.3927 -0.7228 19 6 -1.7079 -10.8611 0.6835 20 6 -1.7780 -9.5238 1.4640 21 8 -0.6640 -8.7659 0.9398 22 6 0.4827 -6.6733 -1.4406 23 6 1.1573 -5.2996 -1.4409 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 2.8411 -3.5490 0.7792 28 1 0.5906 -4.8266 0.5847 29 1 2.6281 -5.7284 1.6444 30 1 3.3430 -6.0340 0.0429 31 1 0.7764 -7.2850 1.1231 32 1 2.3488 -8.1039 0.9670 33 1 1.4157 -9.7040 -0.3426 34 1 0.8674 -9.3452 -1.9976 35 1 -2.1213 -10.3006 -1.3855 36 1 -0.5288 -11.0840 -1.1403 37 1 -2.6867 -11.3387 0.6416 38 1 -0.9686 -11.5302 1.1239 39 1 -2.7181 -9.0103 1.2621 40 1 -1.6587 -9.6969 2.5335 41 1 0.2466 -6.9621 -2.4647 42 1 -0.4358 -6.6267 -0.8555 43 1 0.4779 -4.5606 -1.8655 44 1 2.0688 -5.3420 -2.0373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819063193.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:46 Heat of formation + Delta-G solvation = -72.327145 kcal Electronic energy + Delta-G solvation = -21285.353717 eV Core-core repulsion = 18235.920881 eV Total energy + Delta-G solvation = -3049.432836 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.03439 -39.51609 -36.98772 -34.90305 -33.26000 -32.67731 -31.81457 -30.26595 -28.27733 -26.02025 -24.49595 -24.12591 -22.85905 -22.48021 -21.92802 -20.40417 -18.59182 -17.66682 -17.05955 -16.76258 -16.56258 -16.21713 -15.98926 -15.84111 -15.35066 -15.04640 -14.54340 -14.47937 -14.06956 -13.95277 -13.67644 -13.34248 -13.21863 -12.86503 -12.76854 -12.70490 -12.44153 -12.31768 -12.22288 -12.05026 -12.03527 -11.82468 -11.56147 -11.52225 -11.22583 -11.08604 -10.70572 -10.68024 -9.16552 -9.12450 -8.23805 -6.35547 1.40103 1.41205 1.55577 2.39300 2.79438 3.09103 3.14410 3.48671 3.69309 3.76094 3.89760 3.94979 3.98156 4.12177 4.20232 4.31328 4.33490 4.46229 4.54309 4.61629 4.65549 4.75448 4.79000 4.79637 4.86798 4.91979 4.94506 5.00022 5.01151 5.07955 5.12148 5.17232 5.21788 5.24803 5.29800 5.43770 5.63474 5.95305 6.02140 6.14804 6.20725 6.46015 6.72493 6.88856 7.35698 8.88287 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036775 B = 0.003477 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.211223 B = 8049.883877 C = 8286.558735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.977 3.023 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.212 3.788 10 N -0.683 5.683 11 C 0.086 3.914 12 C -0.108 4.108 13 C 0.067 3.933 14 N -0.536 5.536 15 C 0.059 3.941 16 C 0.031 3.969 17 H 0.058 0.942 18 C -0.143 4.143 19 C -0.146 4.146 20 C 0.032 3.968 21 O -0.394 6.394 22 C 0.066 3.934 23 C -0.096 4.096 24 H 0.265 0.735 25 H -0.001 1.001 26 H -0.047 1.047 27 H 0.334 0.666 28 H 0.005 0.995 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.025 0.975 43 H 0.040 0.960 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.065 -24.549 -0.213 24.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.800 3.200 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.084 3.916 10 N -0.313 5.313 11 C -0.024 4.024 12 C -0.146 4.146 13 C -0.061 4.061 14 N -0.259 5.259 15 C -0.069 4.069 16 C -0.028 4.028 17 H 0.075 0.925 18 C -0.182 4.182 19 C -0.183 4.183 20 C -0.044 4.044 21 O -0.314 6.314 22 C -0.062 4.062 23 C -0.135 4.135 24 H 0.074 0.926 25 H 0.017 0.983 26 H -0.029 1.029 27 H 0.151 0.849 28 H 0.023 0.977 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.115 0.885 41 H 0.108 0.892 42 H 0.043 0.957 43 H 0.059 0.941 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.525 -24.268 -1.048 24.338 hybrid contribution -1.410 1.153 1.349 2.267 sum -2.935 -23.115 0.301 23.303 Atomic orbital electron populations 1.70110 1.07911 1.27967 1.51594 1.26011 0.95827 1.03561 0.94499 0.85230 0.78926 0.77996 0.77800 1.18543 1.20257 1.20214 1.21586 0.93837 0.91377 1.50535 0.91661 1.19199 0.90570 0.89083 0.92712 1.60604 1.20273 1.01362 1.49070 1.21555 0.94780 0.89752 0.96308 1.21710 0.98986 0.93643 1.00253 1.22045 0.99285 0.95993 0.88755 1.62147 1.43645 1.02301 1.17797 1.22601 0.91390 0.90147 1.02748 1.23697 0.98951 0.97596 0.82568 0.92457 1.22941 1.01658 0.95346 0.98221 1.23083 1.03306 0.97173 0.94786 1.23764 0.89626 0.91283 0.99722 1.88995 1.50776 1.70234 1.21382 1.22003 0.93229 0.91155 0.99811 1.21465 1.00550 0.95275 0.96201 0.92602 0.98334 1.02943 0.84867 0.97711 0.91587 0.90559 0.94119 0.89729 0.89502 0.87679 0.89986 0.88736 0.88769 0.89982 0.92755 0.88523 0.89235 0.95679 0.94139 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.38 13.29 21.45 0.28 -58.10 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.98 45.52 29.54 68.60 2.03 47.55 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.54 -31.88 9.32 25.60 0.24 -31.65 16 8 H 0.07 3.77 7.81 -2.91 -0.02 3.75 16 9 C 0.21 12.12 5.24 85.56 0.45 12.57 16 10 N -0.68 -31.80 6.30 -495.14 -3.12 -34.92 16 11 C 0.09 3.41 2.56 45.00 0.12 3.52 16 12 C -0.11 -3.39 5.36 30.65 0.16 -3.23 16 13 C 0.07 1.85 4.96 86.33 0.43 2.28 16 14 N -0.54 -13.76 4.86 -896.36 -4.36 -18.12 16 15 C 0.06 1.12 5.06 86.30 0.44 1.56 16 16 C 0.03 0.60 2.90 30.97 0.09 0.69 16 17 H 0.06 1.28 6.04 -2.39 -0.01 1.26 16 18 C -0.14 -1.82 6.64 31.58 0.21 -1.61 16 19 C -0.15 -1.74 7.16 31.90 0.23 -1.51 16 20 C 0.03 0.55 7.72 72.67 0.56 1.11 16 21 O -0.39 -9.34 8.54 -148.98 -1.27 -10.61 16 22 C 0.07 1.91 4.51 86.33 0.39 2.30 16 23 C -0.10 -3.51 5.59 30.65 0.17 -3.34 16 24 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 25 H 0.00 -0.09 7.51 -2.38 -0.02 -0.11 16 26 H -0.05 -2.92 8.06 -2.39 -0.02 -2.93 16 27 H 0.33 14.72 8.36 -89.69 -0.75 13.97 16 28 H 0.00 0.22 7.80 -2.39 -0.02 0.20 16 29 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.04 1.26 5.88 -2.39 -0.01 1.24 16 32 H 0.08 2.03 7.96 -2.39 -0.02 2.01 16 33 H 0.09 1.53 7.88 -2.39 -0.02 1.52 16 34 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.09 0.92 7.70 -2.39 -0.02 0.90 16 37 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.09 2.20 8.12 -2.39 -0.02 2.18 16 42 H 0.03 0.78 6.43 -2.39 -0.02 0.77 16 43 H 0.04 1.65 7.54 -2.39 -0.02 1.63 16 44 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -68.91 335.00 -2.28 -71.19 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.21 Total: 19.90 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: 3.94 Total: -16.90 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -7.19 Total: -111.14 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -1.27 Total: -10.61 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -68.91 -2.28 -71.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819063193.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.135 kcal (2) G-P(sol) polarization free energy of solvation -68.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds