Wall clock time and date at job start Mon Mar 30 2020 01:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99695 * 2 1 4 4 H 1.48497 * 109.47130 * 269.99905 * 3 2 1 5 5 H 1.48505 * 109.47442 * 30.00259 * 3 2 1 6 6 H 1.48506 * 109.46921 * 150.00069 * 3 2 1 7 7 C 1.37873 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00230 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99791 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.47195 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00092 * 180.02562 * 10 9 7 12 12 C 1.53118 * 109.52558 * 274.68282 * 11 10 9 13 13 C 1.53029 * 109.28235 * 182.44239 * 12 11 10 14 14 N 1.46850 * 109.52357 * 59.17710 * 13 12 11 15 15 C 1.46894 * 110.99926 * 174.16203 * 14 13 12 16 16 C 1.52998 * 109.47412 * 199.97177 * 15 14 13 17 17 H 1.09004 * 110.33025 * 304.60413 * 16 15 14 18 18 C 1.54478 * 110.37618 * 182.34683 * 16 15 14 19 19 C 1.54504 * 104.06478 * 217.18997 * 18 16 15 20 20 C 1.54482 * 104.06426 * 359.97438 * 19 18 16 21 21 O 1.44427 * 104.79996 * 23.98149 * 20 19 18 22 22 C 1.46847 * 111.20041 * 298.25950 * 14 13 12 23 23 C 1.53040 * 109.52231 * 61.74154 * 22 14 13 24 24 H 0.97005 * 120.00897 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47046 * 60.00301 * 9 7 2 26 26 H 1.08994 * 109.47449 * 300.00569 * 9 7 2 27 27 H 1.00902 * 110.99758 * 303.95980 * 10 9 7 28 28 H 1.08998 * 109.52103 * 34.87330 * 11 10 9 29 29 H 1.09009 * 109.50140 * 302.38668 * 12 11 10 30 30 H 1.08996 * 109.50065 * 62.49786 * 12 11 10 31 31 H 1.09006 * 109.46384 * 299.16495 * 13 12 11 32 32 H 1.08996 * 109.45482 * 179.19060 * 13 12 11 33 33 H 1.09002 * 109.47445 * 319.97424 * 15 14 13 34 34 H 1.09003 * 109.47581 * 79.97074 * 15 14 13 35 35 H 1.08997 * 110.51320 * 335.83372 * 18 16 15 36 36 H 1.09006 * 110.50910 * 98.40697 * 18 16 15 37 37 H 1.09005 * 110.51508 * 118.64369 * 19 18 16 38 38 H 1.09000 * 110.51100 * 241.21863 * 19 18 16 39 39 H 1.08996 * 110.37263 * 142.80392 * 20 19 18 40 40 H 1.08993 * 110.37618 * 265.04136 * 20 19 18 41 41 H 1.09003 * 109.46157 * 301.72751 * 22 14 13 42 42 H 1.08994 * 109.46323 * 181.75610 * 22 14 13 43 43 H 1.08998 * 109.50347 * 180.87807 * 23 22 14 44 44 H 1.09005 * 109.50258 * 60.76089 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6528 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0000 10 7 4.0013 -2.5789 0.0001 11 6 5.4697 -2.6180 0.0001 12 6 5.9845 -2.5140 -1.4382 13 6 7.5113 -2.6166 -1.4371 14 7 7.9167 -3.8976 -0.8446 15 6 9.3688 -4.0914 -0.9524 16 6 9.6976 -5.5780 -0.8016 17 1 9.2898 -5.9631 0.1330 18 6 11.2257 -5.7988 -0.8531 19 6 11.3873 -7.1277 -1.6244 20 6 9.9376 -7.5531 -1.9471 21 8 9.1787 -6.3245 -1.9235 22 6 7.4744 -4.0004 0.5519 23 6 5.9463 -3.9392 0.6102 24 1 -0.4852 0.8400 0.0004 25 1 3.8752 -0.6795 0.8895 26 1 3.8745 -0.6807 -0.8904 27 1 3.6260 -3.0950 0.7817 28 1 5.8562 -1.7852 0.5875 29 1 5.5656 -3.3250 -2.0341 30 1 5.6843 -1.5565 -1.8637 31 1 7.9300 -1.7974 -0.8524 32 1 7.8799 -2.5572 -2.4611 33 1 9.7109 -3.7406 -1.9261 34 1 9.8702 -3.5268 -0.1662 35 1 11.7115 -4.9841 -1.3900 36 1 11.6329 -5.8874 0.1542 37 1 11.9529 -6.9701 -2.5427 38 1 11.8762 -7.8751 -0.9994 39 1 9.8876 -8.0109 -2.9350 40 1 9.5675 -8.2443 -1.1901 41 1 7.8932 -3.1747 1.1272 42 1 7.8162 -4.9461 0.9725 43 1 5.6190 -3.9998 1.6481 44 1 5.5270 -4.7726 0.0465 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819063194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:49 Heat of formation + Delta-G solvation = -47.496183 kcal Electronic energy + Delta-G solvation = -20910.609188 eV Core-core repulsion = 17862.253103 eV Total energy + Delta-G solvation = -3048.356085 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.84226 -38.66792 -35.59039 -32.93186 -32.30068 -31.52255 -30.74821 -29.43633 -26.89693 -24.96542 -23.27007 -22.54355 -21.68807 -21.10952 -20.64319 -19.40244 -16.89236 -16.73052 -16.08137 -15.78116 -15.52838 -14.87659 -14.58344 -14.47291 -14.05146 -13.94253 -13.73752 -13.14041 -12.78583 -12.71245 -12.36197 -12.27535 -12.01759 -11.85447 -11.72510 -11.61005 -11.28405 -11.01092 -10.94451 -10.82640 -10.80641 -10.39747 -10.30460 -9.97950 -9.83806 -9.67161 -9.22348 -8.56270 -8.25558 -7.41026 -6.03152 -4.00633 3.30260 3.37047 3.39604 3.63849 3.87271 4.31766 4.44129 4.48495 4.62254 4.78921 4.85892 4.94619 5.05841 5.13778 5.17703 5.23516 5.29785 5.37090 5.40849 5.43819 5.47318 5.51375 5.56563 5.62496 5.69806 5.75282 5.80292 5.90651 5.94266 6.07971 6.25136 6.33045 6.53168 6.70344 6.74986 6.87126 7.05334 7.15109 7.16026 7.66167 7.96867 8.40845 8.69513 9.05681 9.59146 11.10264 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.047724 B = 0.003237 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.560528 B = 8646.971614 C = 8846.680111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.514 4.514 8 H 0.079 0.921 9 C 0.165 3.835 10 N -0.675 5.675 11 C 0.084 3.916 12 C -0.103 4.103 13 C 0.060 3.940 14 N -0.529 5.529 15 C 0.061 3.939 16 C 0.082 3.918 17 H 0.067 0.933 18 C -0.152 4.152 19 C -0.155 4.155 20 C 0.040 3.960 21 O -0.351 6.351 22 C 0.060 3.940 23 C -0.116 4.116 24 H 0.263 0.737 25 H -0.018 1.018 26 H 0.021 0.979 27 H 0.335 0.665 28 H 0.028 0.972 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.027 0.973 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.057 0.943 41 H 0.029 0.971 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.206 -11.763 -0.512 27.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.553 4.553 8 H 0.097 0.903 9 C 0.037 3.963 10 N -0.306 5.306 11 C -0.026 4.026 12 C -0.141 4.141 13 C -0.068 4.068 14 N -0.253 5.253 15 C -0.068 4.068 16 C 0.024 3.976 17 H 0.085 0.915 18 C -0.191 4.191 19 C -0.193 4.193 20 C -0.037 4.037 21 O -0.269 6.269 22 C -0.069 4.069 23 C -0.155 4.155 24 H 0.073 0.927 25 H -0.001 1.001 26 H 0.039 0.961 27 H 0.153 0.847 28 H 0.046 0.954 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.047 0.953 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 24.568 -11.992 -1.604 27.386 hybrid contribution 1.172 1.807 1.524 2.638 sum 25.740 -10.185 -0.081 27.682 Atomic orbital electron populations 1.69899 1.06144 1.26821 1.51161 1.24908 0.94741 0.98917 0.94813 0.86830 0.80223 0.83911 0.78589 1.20124 1.21243 1.19348 1.21087 0.89032 0.94791 1.50347 0.90275 1.20022 0.96513 0.85203 0.94531 1.60481 1.04100 1.16599 1.49418 1.21518 0.90309 0.95315 0.95476 1.21564 0.92345 1.02747 0.97477 1.22136 0.97138 0.88593 0.98966 1.61833 1.11906 1.33902 1.17674 1.22142 0.88906 0.93897 1.01809 1.22988 0.91428 0.92637 0.90560 0.91476 1.22985 0.96803 0.98136 1.01156 1.22929 0.98178 0.97261 1.00905 1.23388 0.89777 0.88480 1.02042 1.89293 1.59085 1.29725 1.48816 1.22099 0.96345 1.00145 0.88266 1.21757 0.94029 0.99144 1.00529 0.92688 1.00086 0.96071 0.84681 0.95388 0.90301 0.91613 0.95475 0.90846 0.90154 0.93542 0.90619 0.90652 0.90779 0.90764 0.89276 0.92523 0.95324 0.91101 0.91905 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.15 13.96 55.43 0.77 -27.37 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 7 C -0.51 -15.05 9.87 -34.44 -0.34 -15.39 16 8 H 0.08 2.51 8.06 -52.49 -0.42 2.08 16 9 C 0.17 4.12 4.31 -4.97 -0.02 4.10 16 10 N -0.68 -14.43 6.30 -107.86 -0.68 -15.11 16 11 C 0.08 1.48 2.56 -67.59 -0.17 1.30 16 12 C -0.10 -1.70 5.59 -26.66 -0.15 -1.85 16 13 C 0.06 0.81 5.43 -3.84 -0.02 0.79 16 14 N -0.53 -6.85 4.57 -234.67 -1.07 -7.92 16 15 C 0.06 0.63 4.61 -3.83 -0.02 0.62 16 16 C 0.08 0.80 3.35 -25.96 -0.09 0.72 16 17 H 0.07 0.66 6.77 -51.93 -0.35 0.31 16 18 C -0.15 -1.09 6.63 -25.17 -0.17 -1.26 16 19 C -0.15 -1.02 7.09 -25.16 -0.18 -1.20 16 20 C 0.04 0.34 7.63 37.94 0.29 0.63 16 21 O -0.35 -4.25 11.33 -35.23 -0.40 -4.65 16 22 C 0.06 0.75 5.29 -3.83 -0.02 0.72 16 23 C -0.12 -1.69 5.36 -26.65 -0.14 -1.83 16 24 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 25 H -0.02 -0.47 7.11 -51.93 -0.37 -0.83 16 26 H 0.02 0.54 6.94 -51.93 -0.36 0.18 16 27 H 0.34 6.93 8.35 -39.29 -0.33 6.60 16 28 H 0.03 0.51 7.80 -51.93 -0.41 0.11 16 29 H 0.08 1.40 8.14 -51.92 -0.42 0.98 16 30 H 0.07 1.15 7.54 -51.93 -0.39 0.76 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.92 7.93 -51.93 -0.41 0.51 16 33 H 0.08 0.83 7.79 -51.93 -0.40 0.43 16 34 H 0.05 0.43 8.00 -51.93 -0.42 0.01 16 35 H 0.08 0.51 7.87 -51.93 -0.41 0.10 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.78 6.68 -51.93 -0.35 0.44 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 338.15 15.07 5.10 5.10 Total: -1.00 -32.10 338.15 -10.09 -42.19 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -8.01 Total: 1.18 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -1.13 Total: -10.74 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: -0.98 Total: -50.40 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: -0.40 Total: -4.65 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.10 -10.09 -42.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819063194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.304 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds