Wall clock time and date at job start Mon Mar 30 2020 01:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99695 * 2 1 4 4 H 1.48497 * 109.47130 * 269.99905 * 3 2 1 5 5 H 1.48505 * 109.47442 * 30.00259 * 3 2 1 6 6 H 1.48506 * 109.46921 * 150.00069 * 3 2 1 7 7 C 1.37873 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00230 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99791 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.47195 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00092 * 180.02562 * 10 9 7 12 12 C 1.53118 * 109.52558 * 274.68282 * 11 10 9 13 13 C 1.53029 * 109.28235 * 182.44239 * 12 11 10 14 14 N 1.46850 * 109.52357 * 59.17710 * 13 12 11 15 15 C 1.46894 * 110.99926 * 174.16203 * 14 13 12 16 16 C 1.52998 * 109.47412 * 199.97177 * 15 14 13 17 17 H 1.09004 * 110.33025 * 304.60413 * 16 15 14 18 18 C 1.54478 * 110.37618 * 182.34683 * 16 15 14 19 19 C 1.54504 * 104.06478 * 217.18997 * 18 16 15 20 20 C 1.54482 * 104.06426 * 359.97438 * 19 18 16 21 21 O 1.44427 * 104.79996 * 23.98149 * 20 19 18 22 22 C 1.46847 * 111.20041 * 298.25950 * 14 13 12 23 23 C 1.53040 * 109.52231 * 61.74154 * 22 14 13 24 24 H 0.97005 * 120.00897 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47046 * 60.00301 * 9 7 2 26 26 H 1.08994 * 109.47449 * 300.00569 * 9 7 2 27 27 H 1.00902 * 110.99758 * 303.95980 * 10 9 7 28 28 H 1.08998 * 109.52103 * 34.87330 * 11 10 9 29 29 H 1.09009 * 109.50140 * 302.38668 * 12 11 10 30 30 H 1.08996 * 109.50065 * 62.49786 * 12 11 10 31 31 H 1.09006 * 109.46384 * 299.16495 * 13 12 11 32 32 H 1.08996 * 109.45482 * 179.19060 * 13 12 11 33 33 H 1.09002 * 109.47445 * 319.97424 * 15 14 13 34 34 H 1.09003 * 109.47581 * 79.97074 * 15 14 13 35 35 H 1.08997 * 110.51320 * 335.83372 * 18 16 15 36 36 H 1.09006 * 110.50910 * 98.40697 * 18 16 15 37 37 H 1.09005 * 110.51508 * 118.64369 * 19 18 16 38 38 H 1.09000 * 110.51100 * 241.21863 * 19 18 16 39 39 H 1.08996 * 110.37263 * 142.80392 * 20 19 18 40 40 H 1.08993 * 110.37618 * 265.04136 * 20 19 18 41 41 H 1.09003 * 109.46157 * 301.72751 * 22 14 13 42 42 H 1.08994 * 109.46323 * 181.75610 * 22 14 13 43 43 H 1.08998 * 109.50347 * 180.87807 * 23 22 14 44 44 H 1.09005 * 109.50258 * 60.76089 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6528 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0000 10 7 4.0013 -2.5789 0.0001 11 6 5.4697 -2.6180 0.0001 12 6 5.9845 -2.5140 -1.4382 13 6 7.5113 -2.6166 -1.4371 14 7 7.9167 -3.8976 -0.8446 15 6 9.3688 -4.0914 -0.9524 16 6 9.6976 -5.5780 -0.8016 17 1 9.2898 -5.9631 0.1330 18 6 11.2257 -5.7988 -0.8531 19 6 11.3873 -7.1277 -1.6244 20 6 9.9376 -7.5531 -1.9471 21 8 9.1787 -6.3245 -1.9235 22 6 7.4744 -4.0004 0.5519 23 6 5.9463 -3.9392 0.6102 24 1 -0.4852 0.8400 0.0004 25 1 3.8752 -0.6795 0.8895 26 1 3.8745 -0.6807 -0.8904 27 1 3.6260 -3.0950 0.7817 28 1 5.8562 -1.7852 0.5875 29 1 5.5656 -3.3250 -2.0341 30 1 5.6843 -1.5565 -1.8637 31 1 7.9300 -1.7974 -0.8524 32 1 7.8799 -2.5572 -2.4611 33 1 9.7109 -3.7406 -1.9261 34 1 9.8702 -3.5268 -0.1662 35 1 11.7115 -4.9841 -1.3900 36 1 11.6329 -5.8874 0.1542 37 1 11.9529 -6.9701 -2.5427 38 1 11.8762 -7.8751 -0.9994 39 1 9.8876 -8.0109 -2.9350 40 1 9.5675 -8.2443 -1.1901 41 1 7.8932 -3.1747 1.1272 42 1 7.8162 -4.9461 0.9725 43 1 5.6190 -3.9998 1.6481 44 1 5.5270 -4.7726 0.0465 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819063194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:48 Heat of formation + Delta-G solvation = -71.350200 kcal Electronic energy + Delta-G solvation = -20911.643576 eV Core-core repulsion = 17862.253103 eV Total energy + Delta-G solvation = -3049.390473 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.67059 -39.70215 -37.05827 -34.85566 -33.22396 -32.76027 -31.89084 -30.55031 -28.60799 -25.95743 -24.49694 -23.68622 -22.91215 -22.21445 -21.63957 -20.66765 -18.97406 -17.54157 -17.00750 -16.67549 -16.45889 -16.38076 -16.18978 -15.60310 -15.49543 -15.05395 -14.60484 -14.58439 -14.35896 -14.09168 -13.75555 -13.29853 -13.20884 -12.99036 -12.69111 -12.65689 -12.55087 -12.22350 -12.11399 -11.96193 -11.92603 -11.80675 -11.60431 -11.47647 -11.28929 -11.13508 -10.82304 -10.59658 -9.20556 -9.14060 -8.31782 -6.36376 1.32734 1.34382 1.45407 2.32187 2.83026 3.01878 3.12221 3.40541 3.73120 3.81423 3.83495 3.99305 4.07084 4.17859 4.23095 4.29834 4.34535 4.44259 4.48155 4.58380 4.64835 4.66827 4.71522 4.75158 4.81030 4.86519 4.89538 4.93573 4.99806 5.01908 5.06717 5.11154 5.17245 5.23386 5.26704 5.39987 5.54925 5.98272 6.01395 6.14720 6.25248 6.56919 6.65880 6.76662 7.28726 8.85108 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.047724 B = 0.003237 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.560528 B = 8646.971614 C = 8846.680111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.252 1.252 7 C -0.529 4.529 8 H 0.036 0.964 9 C 0.179 3.821 10 N -0.687 5.687 11 C 0.084 3.916 12 C -0.100 4.100 13 C 0.069 3.931 14 N -0.546 5.546 15 C 0.062 3.938 16 C 0.078 3.922 17 H 0.065 0.935 18 C -0.148 4.148 19 C -0.150 4.150 20 C 0.032 3.968 21 O -0.387 6.387 22 C 0.065 3.935 23 C -0.109 4.109 24 H 0.268 0.732 25 H -0.016 1.016 26 H 0.021 0.979 27 H 0.337 0.663 28 H 0.028 0.972 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.036 0.964 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.060 0.940 41 H 0.038 0.962 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.480 -11.285 0.034 30.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.190 4.190 3 Si 0.775 3.225 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.176 1.176 7 C -0.567 4.567 8 H 0.055 0.945 9 C 0.050 3.950 10 N -0.317 5.317 11 C -0.026 4.026 12 C -0.139 4.139 13 C -0.060 4.060 14 N -0.270 5.270 15 C -0.066 4.066 16 C 0.020 3.980 17 H 0.083 0.917 18 C -0.186 4.186 19 C -0.188 4.188 20 C -0.044 4.044 21 O -0.307 6.307 22 C -0.063 4.063 23 C -0.148 4.148 24 H 0.077 0.923 25 H 0.002 0.998 26 H 0.039 0.961 27 H 0.154 0.846 28 H 0.046 0.954 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.078 0.922 41 H 0.056 0.944 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 27.869 -11.543 -1.057 30.183 hybrid contribution 0.083 1.526 1.330 2.026 sum 27.952 -10.016 0.273 29.694 Atomic orbital electron populations 1.70051 1.08151 1.28268 1.52271 1.25893 0.95671 1.03329 0.94104 0.85650 0.79230 0.78350 0.79291 1.19014 1.20364 1.17616 1.21352 0.91424 0.93453 1.50503 0.94524 1.19737 0.93590 0.87271 0.94356 1.60405 1.06953 1.14594 1.49771 1.21632 0.87599 0.97008 0.96395 1.21508 0.94810 1.01211 0.96363 1.21999 0.94585 0.89458 0.99918 1.61799 1.13915 1.33399 1.17916 1.22210 0.87204 0.94738 1.02433 1.23084 0.93156 0.91885 0.89856 0.91676 1.22976 0.94812 0.98484 1.02302 1.22921 0.96957 0.97448 1.01437 1.23563 0.90755 0.87572 1.02555 1.89251 1.60448 1.31205 1.49761 1.22057 0.94379 1.01446 0.88386 1.21686 0.95850 0.96668 1.00554 0.92289 0.99849 0.96086 0.84552 0.95440 0.92167 0.92969 0.94571 0.89940 0.90207 0.91747 0.90149 0.89007 0.90320 0.89073 0.88893 0.92171 0.94388 0.89393 0.90861 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.44 13.96 21.44 0.30 -60.14 16 2 C 0.01 0.45 5.47 84.65 0.46 0.91 16 3 Si 0.95 45.11 27.47 68.60 1.88 46.99 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 7 C -0.53 -31.78 9.87 25.60 0.25 -31.52 16 8 H 0.04 2.44 8.06 -2.92 -0.02 2.41 16 9 C 0.18 8.94 4.31 85.56 0.37 9.30 16 10 N -0.69 -29.62 6.30 -495.16 -3.12 -32.74 16 11 C 0.08 2.86 2.56 45.00 0.12 2.98 16 12 C -0.10 -3.27 5.59 30.64 0.17 -3.10 16 13 C 0.07 1.75 5.43 86.32 0.47 2.21 16 14 N -0.55 -13.08 4.57 -896.38 -4.10 -17.18 16 15 C 0.06 1.13 4.61 86.30 0.40 1.53 16 16 C 0.08 1.36 3.35 31.10 0.10 1.46 16 17 H 0.07 1.13 6.77 -2.39 -0.02 1.12 16 18 C -0.15 -1.68 6.63 31.61 0.21 -1.47 16 19 C -0.15 -1.60 7.09 31.61 0.22 -1.38 16 20 C 0.03 0.50 7.63 72.49 0.55 1.05 16 21 O -0.39 -8.93 11.33 -148.98 -1.69 -10.62 16 22 C 0.07 1.48 5.29 86.33 0.46 1.94 16 23 C -0.11 -3.05 5.36 30.65 0.16 -2.88 16 24 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 25 H -0.02 -0.79 7.11 -2.39 -0.02 -0.81 16 26 H 0.02 1.05 6.94 -2.39 -0.02 1.04 16 27 H 0.34 14.17 8.35 -89.69 -0.75 13.42 16 28 H 0.03 0.96 7.80 -2.39 -0.02 0.94 16 29 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.05 1.81 7.54 -2.39 -0.02 1.79 16 31 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.08 1.94 7.93 -2.39 -0.02 1.92 16 33 H 0.08 1.47 7.79 -2.39 -0.02 1.45 16 34 H 0.06 0.96 8.00 -2.39 -0.02 0.94 16 35 H 0.08 0.85 7.87 -2.39 -0.02 0.83 16 36 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.09 1.71 6.68 -2.39 -0.02 1.70 16 43 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -70.29 338.15 -2.62 -72.92 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.15 Total: 19.75 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: 3.95 Total: -18.97 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -6.92 Total: -110.06 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -1.69 Total: -10.62 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 46.99 kcal Total: -70.29 -2.62 -72.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819063194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.569 kcal (2) G-P(sol) polarization free energy of solvation -70.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds