Wall clock time and date at job start Mon Mar 30 2020 01:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47477 * 2 1 4 4 C 1.53007 * 109.47141 * 119.99292 * 2 1 3 5 5 C 1.53010 * 109.46738 * 59.99955 * 4 2 1 6 6 C 1.53001 * 109.47001 * 60.00076 * 5 4 2 7 7 C 1.52998 * 109.47146 * 299.99971 * 6 5 4 8 8 C 1.52994 * 109.47330 * 239.99345 * 2 1 3 9 9 H 1.09004 * 109.47604 * 180.02562 * 8 2 1 10 10 C 1.50699 * 109.47068 * 60.00103 * 8 2 1 11 11 O 1.20825 * 119.99862 * 0.02562 * 10 8 2 12 12 O 1.34229 * 120.00094 * 179.97438 * 10 8 2 13 13 C 1.45199 * 117.00070 * 179.97438 * 12 10 8 14 14 C 1.52996 * 109.47330 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47068 * 60.00469 * 14 13 12 16 16 C 1.53000 * 109.47166 * 300.00314 * 14 13 12 17 17 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 14 13 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 14 13 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 14 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 14 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 H 1.08997 * 109.47408 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46992 * 300.00843 * 1 2 3 27 27 H 1.08999 * 109.46753 * 60.00252 * 1 2 3 28 28 H 1.08994 * 109.47446 * 300.00373 * 4 2 1 29 29 H 1.09004 * 109.47371 * 179.97438 * 4 2 1 30 30 H 1.08999 * 109.47193 * 300.00534 * 5 4 2 31 31 H 1.08999 * 109.46849 * 179.97438 * 5 4 2 32 32 H 1.09002 * 109.47530 * 179.97438 * 6 5 4 33 33 H 1.08998 * 109.47189 * 59.99865 * 6 5 4 34 34 H 1.08999 * 109.47472 * 299.99801 * 7 6 5 35 35 H 1.09008 * 109.47271 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.46786 * 60.00344 * 13 12 10 37 37 H 1.09000 * 109.47637 * 300.00777 * 13 12 10 38 38 H 1.09001 * 109.47094 * 180.02562 * 15 14 13 39 39 H 1.09003 * 109.46851 * 300.00074 * 15 14 13 40 40 H 1.09003 * 109.47532 * 60.00149 * 15 14 13 41 41 H 1.09004 * 109.47084 * 299.99410 * 16 14 13 42 42 H 1.08994 * 109.47175 * 59.99981 * 16 14 13 43 43 H 1.09001 * 109.47192 * 179.97438 * 16 14 13 44 44 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.5299 -2.1637 1.2495 6 6 2.0399 -2.8850 0.0003 7 6 1.5300 -2.1639 -1.2490 8 6 2.0400 -0.7214 -1.2491 9 1 3.1300 -0.7218 -1.2489 10 6 1.5377 -0.0111 -2.4796 11 8 0.8434 0.9716 -2.3689 12 8 1.8624 -0.4695 -3.6987 13 6 1.3428 0.2643 -4.8389 14 6 1.8144 -0.4026 -6.1325 15 6 1.3042 -1.8443 -6.1785 16 6 3.3437 -0.4011 -6.1790 17 6 1.2756 0.3593 -7.3159 18 1 0.6588 1.2322 -7.1607 19 6 1.5752 -0.0543 -8.5966 20 7 2.3266 -1.1171 -8.7855 21 14 0.9137 0.8946 -10.0633 22 1 0.1014 2.0420 -9.5850 23 1 2.0476 1.3976 -10.8797 24 1 0.0667 -0.0011 -10.8913 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6767 -0.2073 2.1393 29 1 3.1300 -0.7215 1.2492 30 1 0.4399 -2.1637 1.2494 31 1 1.8936 -2.6776 2.1393 32 1 1.6770 -3.9129 0.0005 33 1 3.1299 -2.8851 0.0003 34 1 0.4400 -2.1638 -1.2491 35 1 1.8937 -2.6775 -2.1390 36 1 1.7059 1.2915 -4.8059 37 1 0.2533 0.2629 -4.8060 38 1 1.6406 -2.3196 -7.0999 39 1 1.6943 -2.3951 -5.3225 40 1 0.2147 -1.8455 -6.1454 41 1 3.7072 0.6261 -6.1464 42 1 3.7338 -0.9519 -5.3232 43 1 3.6797 -0.8766 -7.1004 44 1 2.5371 -1.4083 -9.6866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820626500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:18 Heat of formation + Delta-G solvation = -122.720598 kcal Electronic energy + Delta-G solvation = -21767.694384 eV Core-core repulsion = 18683.783572 eV Total energy + Delta-G solvation = -3083.910812 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.53985 -38.48235 -36.42980 -34.82546 -31.91390 -31.53459 -31.01669 -27.20137 -25.70402 -25.60681 -25.09190 -23.45011 -22.30946 -20.57775 -18.82211 -18.56237 -17.16543 -16.23998 -15.87886 -15.74968 -15.10852 -14.64999 -14.53917 -14.10372 -13.52176 -13.12532 -13.02570 -12.86270 -12.74430 -12.46056 -11.83129 -11.74361 -11.61993 -11.35929 -11.27260 -11.12626 -11.03819 -10.87797 -10.71223 -10.66051 -10.39536 -10.27381 -10.17710 -10.09540 -9.86261 -9.67116 -9.38071 -9.24091 -8.73539 -8.37293 -6.01386 -4.12748 2.67354 3.26984 3.28069 3.35674 3.41512 4.38886 4.52217 4.59085 4.73565 5.04977 5.10342 5.22505 5.25090 5.27851 5.33244 5.37736 5.56241 5.65046 5.73005 5.88968 5.91833 5.95836 5.99610 6.01709 6.11786 6.13423 6.22830 6.24878 6.34812 6.49139 6.53592 6.78455 6.99706 7.13028 7.15334 7.20867 7.43047 7.63513 7.70938 8.06146 8.17292 8.32877 8.41883 8.87468 9.52744 10.99807 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.039183 B = 0.004179 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.422096 B = 6698.568639 C = 7038.013248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.074 4.074 3 H 0.075 0.925 4 C -0.113 4.113 5 C -0.124 4.124 6 C -0.116 4.116 7 C -0.114 4.114 8 C -0.076 4.076 9 H 0.103 0.897 10 C 0.456 3.544 11 O -0.517 6.517 12 O -0.347 6.347 13 C 0.084 3.916 14 C 0.069 3.931 15 C -0.128 4.128 16 C -0.129 4.129 17 C -0.511 4.511 18 H 0.057 0.943 19 C 0.068 3.932 20 N -0.882 5.882 21 Si 0.895 3.105 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.016 0.984 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.016 0.984 43 H 0.084 0.916 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.301 -3.034 17.386 17.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.092 4.092 3 H 0.094 0.906 4 C -0.150 4.150 5 C -0.161 4.161 6 C -0.154 4.154 7 C -0.151 4.151 8 C -0.095 4.095 9 H 0.121 0.879 10 C 0.300 3.700 11 O -0.407 6.407 12 O -0.263 6.263 13 C 0.011 3.989 14 C 0.069 3.931 15 C -0.186 4.186 16 C -0.187 4.187 17 C -0.549 4.549 18 H 0.075 0.925 19 C -0.134 4.134 20 N -0.520 5.520 21 Si 0.722 3.278 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.035 0.965 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.035 0.965 43 H 0.102 0.898 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.170 -2.850 17.205 17.440 hybrid contribution -0.405 0.727 -0.907 1.231 sum -0.235 -2.122 16.298 16.437 Atomic orbital electron populations 1.22174 0.94688 1.01892 1.03250 1.20926 0.96965 0.99035 0.92311 0.90627 1.21577 1.00529 0.95683 0.97251 1.21616 1.01247 0.95555 0.97707 1.21523 1.00942 0.98889 0.94033 1.21554 1.01510 0.92856 0.99193 1.21065 1.02187 0.96142 0.90086 0.87920 1.23593 0.77743 0.82813 0.85877 1.90547 1.36091 1.26475 1.87552 1.86523 1.69007 1.55935 1.14835 1.23631 0.97590 0.94776 0.82862 1.18242 0.93565 0.93411 0.87878 1.21753 0.97898 0.97874 1.01041 1.21762 0.97182 0.98630 1.01079 1.20989 1.31741 1.12213 0.89974 0.92508 1.24858 0.94835 0.95003 0.98671 1.69844 1.36987 1.23901 1.21295 0.86496 0.78759 0.79979 0.82529 1.19787 1.20968 1.20959 0.92644 0.93157 0.90063 0.91707 0.91901 0.91544 0.92158 0.91610 0.91718 0.91174 0.90208 0.92712 0.92705 0.89817 0.96459 0.95899 0.95912 0.96469 0.89760 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 8.18 37.16 0.30 -1.69 16 2 C -0.07 -0.86 2.36 -90.62 -0.21 -1.08 16 3 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 4 C -0.11 -1.02 5.45 -26.72 -0.15 -1.17 16 5 C -0.12 -1.05 5.65 -26.73 -0.15 -1.20 16 6 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 7 C -0.11 -1.34 4.86 -26.73 -0.13 -1.47 16 8 C -0.08 -0.99 2.41 -91.77 -0.22 -1.21 16 9 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 10 C 0.46 8.06 6.96 36.01 0.25 8.31 16 11 O -0.52 -10.18 13.41 -18.75 -0.25 -10.43 16 12 O -0.35 -6.97 8.78 -39.26 -0.34 -7.31 16 13 C 0.08 1.89 4.26 37.16 0.16 2.05 16 14 C 0.07 1.71 0.58 -155.66 -0.09 1.62 16 15 C -0.13 -3.09 8.11 37.16 0.30 -2.79 16 16 C -0.13 -3.13 8.10 37.16 0.30 -2.83 16 17 C -0.51 -13.76 8.01 -34.44 -0.28 -14.04 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 19 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 20 N -0.88 -24.02 9.35 55.43 0.52 -23.50 16 21 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H 0.05 0.63 4.81 -51.93 -0.25 0.38 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 1.23 5.52 -51.93 -0.29 0.95 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.58 6.43 -51.93 -0.33 0.24 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.85 6.43 -51.93 -0.33 0.52 16 35 H 0.08 1.02 8.11 -51.92 -0.42 0.60 16 36 H 0.05 1.25 8.13 -51.93 -0.42 0.83 16 37 H 0.05 1.25 8.13 -51.93 -0.42 0.82 16 38 H 0.08 2.19 6.08 -51.93 -0.32 1.87 16 39 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 43 H 0.08 2.21 6.06 -51.93 -0.31 1.90 16 44 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 330.91 15.07 4.99 4.99 Total: -1.00 -28.02 330.91 -7.94 -35.96 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.66 Total: -0.60 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -0.16 Total: -14.98 kcal Atomic # 7 Polarization: -24.02 SS G_CDS: 0.52 Total: -23.50 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.60 Total: -17.75 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.02 -7.94 -35.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820626500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.763 kcal (2) G-P(sol) polarization free energy of solvation -28.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds