Wall clock time and date at job start Mon Mar 30 2020 01:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47477 * 2 1 4 4 C 1.53007 * 109.47141 * 119.99292 * 2 1 3 5 5 C 1.53010 * 109.46738 * 59.99955 * 4 2 1 6 6 C 1.53001 * 109.47001 * 60.00076 * 5 4 2 7 7 C 1.52998 * 109.47146 * 299.99971 * 6 5 4 8 8 C 1.52994 * 109.47330 * 239.99345 * 2 1 3 9 9 H 1.09004 * 109.47604 * 180.02562 * 8 2 1 10 10 C 1.50699 * 109.47068 * 60.00103 * 8 2 1 11 11 O 1.20825 * 119.99862 * 0.02562 * 10 8 2 12 12 O 1.34229 * 120.00094 * 179.97438 * 10 8 2 13 13 C 1.45199 * 117.00070 * 179.97438 * 12 10 8 14 14 C 1.52996 * 109.47330 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47068 * 60.00469 * 14 13 12 16 16 C 1.53000 * 109.47166 * 300.00314 * 14 13 12 17 17 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 14 13 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 14 13 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 14 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 14 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 H 1.08997 * 109.47408 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46992 * 300.00843 * 1 2 3 27 27 H 1.08999 * 109.46753 * 60.00252 * 1 2 3 28 28 H 1.08994 * 109.47446 * 300.00373 * 4 2 1 29 29 H 1.09004 * 109.47371 * 179.97438 * 4 2 1 30 30 H 1.08999 * 109.47193 * 300.00534 * 5 4 2 31 31 H 1.08999 * 109.46849 * 179.97438 * 5 4 2 32 32 H 1.09002 * 109.47530 * 179.97438 * 6 5 4 33 33 H 1.08998 * 109.47189 * 59.99865 * 6 5 4 34 34 H 1.08999 * 109.47472 * 299.99801 * 7 6 5 35 35 H 1.09008 * 109.47271 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.46786 * 60.00344 * 13 12 10 37 37 H 1.09000 * 109.47637 * 300.00777 * 13 12 10 38 38 H 1.09001 * 109.47094 * 180.02562 * 15 14 13 39 39 H 1.09003 * 109.46851 * 300.00074 * 15 14 13 40 40 H 1.09003 * 109.47532 * 60.00149 * 15 14 13 41 41 H 1.09004 * 109.47084 * 299.99410 * 16 14 13 42 42 H 1.08994 * 109.47175 * 59.99981 * 16 14 13 43 43 H 1.09001 * 109.47192 * 179.97438 * 16 14 13 44 44 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.5299 -2.1637 1.2495 6 6 2.0399 -2.8850 0.0003 7 6 1.5300 -2.1639 -1.2490 8 6 2.0400 -0.7214 -1.2491 9 1 3.1300 -0.7218 -1.2489 10 6 1.5377 -0.0111 -2.4796 11 8 0.8434 0.9716 -2.3689 12 8 1.8624 -0.4695 -3.6987 13 6 1.3428 0.2643 -4.8389 14 6 1.8144 -0.4026 -6.1325 15 6 1.3042 -1.8443 -6.1785 16 6 3.3437 -0.4011 -6.1790 17 6 1.2756 0.3593 -7.3159 18 1 0.6588 1.2322 -7.1607 19 6 1.5752 -0.0543 -8.5966 20 7 2.3266 -1.1171 -8.7855 21 14 0.9137 0.8946 -10.0633 22 1 0.1014 2.0420 -9.5850 23 1 2.0476 1.3976 -10.8797 24 1 0.0667 -0.0011 -10.8913 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6767 -0.2073 2.1393 29 1 3.1300 -0.7215 1.2492 30 1 0.4399 -2.1637 1.2494 31 1 1.8936 -2.6776 2.1393 32 1 1.6770 -3.9129 0.0005 33 1 3.1299 -2.8851 0.0003 34 1 0.4400 -2.1638 -1.2491 35 1 1.8937 -2.6775 -2.1390 36 1 1.7059 1.2915 -4.8059 37 1 0.2533 0.2629 -4.8060 38 1 1.6406 -2.3196 -7.0999 39 1 1.6943 -2.3951 -5.3225 40 1 0.2147 -1.8455 -6.1454 41 1 3.7072 0.6261 -6.1464 42 1 3.7338 -0.9519 -5.3232 43 1 3.6797 -0.8766 -7.1004 44 1 2.5371 -1.4083 -9.6866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820626500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:18 Heat of formation + Delta-G solvation = -135.035610 kcal Electronic energy + Delta-G solvation = -21768.228403 eV Core-core repulsion = 18683.783572 eV Total energy + Delta-G solvation = -3084.444831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.86730 -39.65850 -38.08073 -36.60855 -33.32714 -32.77452 -32.17910 -28.26537 -27.58444 -27.47860 -26.99568 -24.52788 -23.18563 -21.84838 -20.71023 -19.51597 -18.62067 -17.76217 -17.49249 -17.36749 -16.70493 -16.09054 -15.52361 -15.11755 -14.90307 -14.77051 -14.45325 -14.11436 -13.82487 -13.71812 -13.40459 -13.25633 -13.11518 -12.86925 -12.60967 -12.57586 -12.42961 -12.30541 -12.15397 -12.12577 -11.91025 -11.69027 -11.66934 -11.33762 -11.25969 -11.09722 -10.92063 -10.78704 -10.71313 -10.41668 -8.05701 -6.23823 1.25214 1.41050 1.43959 1.53889 1.86626 2.44833 3.17583 3.54202 3.72053 3.76703 4.15990 4.21437 4.25311 4.27493 4.31366 4.37370 4.44918 4.52535 4.60154 4.66114 4.81795 4.84358 4.90680 4.98807 5.03654 5.09663 5.19033 5.19399 5.21587 5.22736 5.27913 5.33991 5.38506 5.42393 5.46911 5.60653 5.62695 5.63666 5.78684 6.06486 6.16827 6.36221 6.78246 6.86979 7.44207 8.94085 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.039183 B = 0.004179 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.422096 B = 6698.568639 C = 7038.013248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.073 4.073 3 H 0.064 0.936 4 C -0.107 4.107 5 C -0.122 4.122 6 C -0.111 4.111 7 C -0.112 4.112 8 C -0.070 4.070 9 H 0.120 0.880 10 C 0.450 3.550 11 O -0.540 6.540 12 O -0.353 6.353 13 C 0.097 3.903 14 C 0.060 3.940 15 C -0.116 4.116 16 C -0.117 4.117 17 C -0.534 4.534 18 H 0.047 0.953 19 C 0.029 3.971 20 N -0.899 5.899 21 Si 0.952 3.048 22 H -0.274 1.274 23 H -0.279 1.279 24 H -0.279 1.279 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.063 0.937 39 H 0.032 0.968 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.032 0.968 43 H 0.063 0.937 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.735 -3.707 19.070 19.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.091 4.091 3 H 0.083 0.917 4 C -0.144 4.144 5 C -0.159 4.159 6 C -0.149 4.149 7 C -0.150 4.150 8 C -0.089 4.089 9 H 0.137 0.863 10 C 0.295 3.705 11 O -0.430 6.430 12 O -0.268 6.268 13 C 0.024 3.976 14 C 0.060 3.940 15 C -0.174 4.174 16 C -0.175 4.175 17 C -0.572 4.572 18 H 0.065 0.935 19 C -0.171 4.171 20 N -0.537 5.537 21 Si 0.778 3.222 22 H -0.199 1.199 23 H -0.205 1.205 24 H -0.204 1.204 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.051 0.949 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.051 0.949 43 H 0.082 0.918 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.606 -3.527 18.904 19.240 hybrid contribution -0.555 0.944 -1.386 1.767 sum 0.051 -2.583 17.518 17.707 Atomic orbital electron populations 1.22122 0.95315 1.02142 1.02193 1.20964 0.96447 0.98767 0.92968 0.91735 1.21561 1.01211 0.95786 0.95859 1.21625 1.01137 0.95125 0.98061 1.21518 1.01508 0.99115 0.92742 1.21564 1.01068 0.91928 1.00398 1.21267 1.03035 0.96587 0.87981 0.86253 1.24652 0.77085 0.82699 0.86027 1.90548 1.37124 1.27697 1.87661 1.86521 1.69199 1.55852 1.15273 1.23187 0.96840 0.94225 0.83367 1.18269 0.93771 0.93569 0.88389 1.21594 0.97563 0.97630 1.00589 1.21607 0.96933 0.98333 1.00626 1.21229 1.32242 1.12442 0.91332 0.93475 1.25504 0.95031 0.95794 1.00812 1.69946 1.37283 1.24575 1.21873 0.85597 0.78230 0.78764 0.79568 1.19853 1.20466 1.20442 0.91749 0.91724 0.93513 0.90433 0.90752 0.91811 0.90129 0.90506 0.90753 0.91941 0.91394 0.93643 0.93664 0.91841 0.94857 0.96271 0.96274 0.94892 0.91772 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 8.18 71.98 0.59 -3.20 16 2 C -0.07 -1.58 2.36 -10.79 -0.03 -1.61 16 3 H 0.06 1.54 8.10 -2.39 -0.02 1.52 16 4 C -0.11 -1.58 5.45 30.60 0.17 -1.41 16 5 C -0.12 -1.64 5.65 30.60 0.17 -1.46 16 6 C -0.11 -1.70 5.92 30.59 0.18 -1.52 16 7 C -0.11 -2.45 4.86 30.59 0.15 -2.30 16 8 C -0.07 -1.73 2.41 -11.54 -0.03 -1.76 16 9 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 10 C 0.45 15.88 6.96 71.24 0.50 16.38 16 11 O -0.54 -21.67 13.41 21.97 0.29 -21.37 16 12 O -0.35 -14.14 8.78 -51.41 -0.45 -14.59 16 13 C 0.10 4.45 4.26 71.98 0.31 4.76 16 14 C 0.06 3.01 0.58 -52.93 -0.03 2.98 16 15 C -0.12 -5.63 8.11 71.98 0.58 -5.05 16 16 C -0.12 -5.71 8.10 71.98 0.58 -5.12 16 17 C -0.53 -29.16 8.01 25.60 0.21 -28.96 16 18 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 19 C 0.03 1.54 5.15 84.66 0.44 1.98 16 20 N -0.90 -49.14 9.35 21.45 0.20 -48.94 16 21 Si 0.95 42.98 29.54 68.60 2.03 45.00 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 25 H 0.06 1.37 4.81 -2.39 -0.01 1.36 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.05 1.43 5.52 -2.39 -0.01 1.42 16 28 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.91 6.43 -2.39 -0.02 0.89 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 1.45 6.43 -2.39 -0.02 1.43 16 35 H 0.07 1.65 8.11 -2.38 -0.02 1.63 16 36 H 0.05 2.12 8.13 -2.38 -0.02 2.10 16 37 H 0.04 2.11 8.13 -2.39 -0.02 2.10 16 38 H 0.06 3.34 6.08 -2.39 -0.01 3.33 16 39 H 0.03 1.45 7.68 -2.39 -0.02 1.44 16 40 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.03 1.44 7.68 -2.39 -0.02 1.43 16 43 H 0.06 3.38 6.06 -2.39 -0.01 3.37 16 44 H 0.26 13.64 8.31 -92.70 -0.77 12.87 16 Total: -1.00 -60.00 330.91 6.81 -53.19 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.95 Total: 13.00 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: 3.78 Total: -26.29 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.20 Total: -48.94 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -0.16 Total: -35.96 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -60.00 6.81 -53.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820626500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.847 kcal (2) G-P(sol) polarization free energy of solvation -59.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds