Wall clock time and date at job start Mon Mar 30 2020 01:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46409 * 2 1 4 4 C 1.52997 * 109.47431 * 119.99672 * 2 1 3 5 5 C 1.52997 * 109.47080 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47342 * 300.00267 * 5 4 2 7 7 C 1.52997 * 109.47255 * 60.00235 * 6 5 4 8 8 C 1.52999 * 109.47327 * 240.00579 * 2 1 3 9 9 H 1.09009 * 109.46302 * 299.99541 * 8 2 1 10 10 C 1.50696 * 109.47581 * 59.99136 * 8 2 1 11 11 O 1.20833 * 119.99595 * 0.02562 * 10 8 2 12 12 O 1.34224 * 120.00302 * 180.02562 * 10 8 2 13 13 C 1.45206 * 117.00077 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.46777 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47317 * 299.99939 * 14 13 12 16 16 C 1.52997 * 109.47269 * 60.00284 * 14 13 12 17 17 C 1.50706 * 109.46953 * 180.02562 * 14 13 12 18 18 H 1.07999 * 119.99816 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00344 * 180.02562 * 17 14 13 20 20 N 1.31514 * 119.99769 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00300 * 179.97438 * 19 17 14 22 22 H 1.48505 * 109.46819 * 59.99744 * 21 19 17 23 23 H 1.48494 * 109.47285 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47196 * 300.00241 * 21 19 17 25 25 H 1.09001 * 109.46747 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47013 * 299.99555 * 1 2 3 27 27 H 1.08994 * 109.47539 * 60.00291 * 1 2 3 28 28 H 1.09002 * 109.46566 * 60.00707 * 4 2 1 29 29 H 1.08995 * 109.47152 * 300.00377 * 4 2 1 30 30 H 1.09004 * 109.47195 * 180.02562 * 5 4 2 31 31 H 1.08997 * 109.47193 * 60.00531 * 5 4 2 32 32 H 1.08997 * 109.47192 * 300.00265 * 6 5 4 33 33 H 1.09008 * 109.47310 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47657 * 179.97438 * 7 6 5 35 35 H 1.09005 * 109.47379 * 59.99413 * 7 6 5 36 36 H 1.09000 * 109.47070 * 300.00162 * 13 12 10 37 37 H 1.09001 * 109.46626 * 60.00180 * 13 12 10 38 38 H 1.09002 * 109.47153 * 60.00359 * 15 14 13 39 39 H 1.09001 * 109.46832 * 180.02562 * 15 14 13 40 40 H 1.08992 * 109.47303 * 299.99871 * 15 14 13 41 41 H 1.09000 * 109.47140 * 59.99453 * 16 14 13 42 42 H 1.09001 * 109.47375 * 179.97438 * 16 14 13 43 43 H 1.09002 * 109.47497 * 299.99829 * 16 14 13 44 44 H 0.97000 * 120.00540 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5700 -0.7205 1.2495 6 6 4.0806 -1.4414 0.0003 7 6 3.5706 -0.7202 -1.2490 8 6 2.0400 -0.7211 -1.2493 9 1 1.6767 -1.7489 -1.2492 10 6 1.5376 -0.0108 -2.4797 11 8 0.8432 0.9718 -2.3688 12 8 1.8615 -0.4696 -3.6988 13 6 1.3427 0.2649 -4.8389 14 6 1.8143 -0.4020 -6.1326 15 6 3.3436 -0.4014 -6.1786 16 6 1.3032 -1.8433 -6.1791 17 6 1.2764 0.3607 -7.3159 18 1 0.6602 1.2340 -7.1607 19 6 1.5709 -0.0563 -8.5967 20 7 2.3217 -1.1194 -8.7857 21 14 0.9036 0.8887 -10.0634 22 1 1.4001 2.2875 -10.0184 23 1 1.3613 0.2415 -11.3190 24 1 -0.5807 0.8886 -10.0185 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 1.6768 -1.7489 1.2492 29 1 1.6767 -0.2073 2.1392 30 1 3.9335 -1.2347 2.1393 31 1 3.9330 0.3072 1.2497 32 1 3.7176 -2.4692 0.0000 33 1 5.1706 -1.4414 0.0007 34 1 3.9346 -1.2334 -2.1390 35 1 3.9334 0.3077 -1.2487 36 1 0.2532 0.2649 -4.8059 37 1 1.7073 1.2916 -4.8060 38 1 3.7330 -0.9528 -5.3228 39 1 3.6795 -0.8761 -7.1005 40 1 3.7077 0.6254 -6.1456 41 1 0.2137 -1.8437 -6.1463 42 1 1.6388 -2.3183 -7.1010 43 1 1.6926 -2.3947 -5.3233 44 1 2.5292 -1.4126 -9.6867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820626501.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:21 Heat of formation + Delta-G solvation = -127.045251 kcal Electronic energy + Delta-G solvation = -21676.825515 eV Core-core repulsion = 18592.727173 eV Total energy + Delta-G solvation = -3084.098343 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.43648 -38.29937 -36.42595 -34.83601 -32.52226 -31.52566 -31.01117 -26.86151 -25.65868 -25.60558 -25.07460 -23.48756 -21.58931 -20.62616 -19.62852 -18.81074 -17.17784 -16.02913 -15.76799 -15.73138 -14.81809 -14.64770 -14.50123 -14.28884 -13.56218 -13.45279 -12.92065 -12.78835 -12.54813 -12.28842 -11.95620 -11.78026 -11.56331 -11.45067 -11.25928 -11.11728 -10.97678 -10.90668 -10.72803 -10.69120 -10.53843 -10.38609 -10.17707 -10.16878 -9.85395 -9.65064 -9.38025 -9.23786 -8.74913 -8.36414 -6.00833 -4.12483 2.67146 3.27523 3.29958 3.34362 3.39819 4.38970 4.51276 4.58940 4.71741 4.99206 5.06763 5.25380 5.25988 5.30455 5.36516 5.37922 5.50420 5.66262 5.70979 5.85152 5.91999 5.94753 6.01109 6.03960 6.13128 6.13485 6.14459 6.24205 6.38149 6.44641 6.50324 6.78467 6.99862 7.12969 7.15446 7.20836 7.43022 7.63602 7.70859 8.06365 8.17267 8.32820 8.41936 8.87234 9.52901 11.00278 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.036454 B = 0.004205 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.902590 B = 6656.501495 C = 7074.837571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.074 4.074 3 H 0.076 0.924 4 C -0.113 4.113 5 C -0.123 4.123 6 C -0.117 4.117 7 C -0.112 4.112 8 C -0.075 4.075 9 H 0.103 0.897 10 C 0.457 3.543 11 O -0.517 6.517 12 O -0.347 6.347 13 C 0.084 3.916 14 C 0.070 3.930 15 C -0.128 4.128 16 C -0.129 4.129 17 C -0.513 4.513 18 H 0.056 0.944 19 C 0.069 3.931 20 N -0.882 5.882 21 Si 0.895 3.105 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.016 0.984 39 H 0.083 0.917 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.084 0.916 43 H 0.016 0.984 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.159 -1.763 17.358 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.092 4.092 3 H 0.095 0.905 4 C -0.150 4.150 5 C -0.160 4.160 6 C -0.155 4.155 7 C -0.150 4.150 8 C -0.095 4.095 9 H 0.121 0.879 10 C 0.300 3.700 11 O -0.407 6.407 12 O -0.263 6.263 13 C 0.011 3.989 14 C 0.070 3.930 15 C -0.186 4.186 16 C -0.186 4.186 17 C -0.551 4.551 18 H 0.074 0.926 19 C -0.133 4.133 20 N -0.520 5.520 21 Si 0.723 3.277 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.203 1.203 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.035 0.965 39 H 0.102 0.898 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.102 0.898 43 H 0.035 0.965 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.033 -1.586 17.171 17.364 hybrid contribution -0.527 0.676 -0.895 1.239 sum 1.506 -0.910 16.276 16.371 Atomic orbital electron populations 1.22092 0.94676 1.01645 1.03461 1.20977 0.96313 0.99622 0.92299 0.90511 1.21608 0.95445 1.00742 0.97237 1.21585 0.95708 1.00904 0.97809 1.21532 1.00463 0.99460 0.93995 1.21530 0.92316 1.01851 0.99268 1.21112 0.97513 1.00759 0.90081 0.87879 1.23591 0.77594 0.82948 0.85876 1.90548 1.36173 1.26410 1.87553 1.86522 1.69061 1.55877 1.14835 1.23636 0.97592 0.94775 0.82861 1.18231 0.93573 0.93379 0.87844 1.21756 0.97164 0.98623 1.01053 1.21760 0.97906 0.97901 1.01062 1.20909 1.32017 1.12146 0.90001 0.92620 1.24849 0.94834 0.94978 0.98638 1.69819 1.36928 1.23786 1.21510 0.86609 0.79368 0.80061 0.81677 1.20258 1.21202 1.20254 0.93325 0.92970 0.89906 0.91804 0.91695 0.92010 0.91921 0.91655 0.91558 0.90083 0.91512 0.92704 0.92703 0.96463 0.89789 0.95911 0.95915 0.89778 0.96465 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 8.87 37.16 0.33 -1.65 16 2 C -0.07 -0.86 1.89 -90.62 -0.17 -1.03 16 3 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 4 C -0.11 -1.02 5.20 -26.73 -0.14 -1.16 16 5 C -0.12 -1.04 5.92 -26.73 -0.16 -1.19 16 6 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 7 C -0.11 -1.32 5.14 -26.71 -0.14 -1.46 16 8 C -0.08 -0.99 2.17 -91.75 -0.20 -1.19 16 9 H 0.10 1.25 8.14 -51.92 -0.42 0.83 16 10 C 0.46 8.07 6.96 36.00 0.25 8.32 16 11 O -0.52 -10.20 13.41 -18.76 -0.25 -10.45 16 12 O -0.35 -6.98 8.78 -39.24 -0.34 -7.32 16 13 C 0.08 1.89 4.26 37.16 0.16 2.05 16 14 C 0.07 1.73 0.58 -155.66 -0.09 1.64 16 15 C -0.13 -3.10 8.11 37.16 0.30 -2.80 16 16 C -0.13 -3.12 8.11 37.16 0.30 -2.82 16 17 C -0.51 -13.81 8.01 -34.44 -0.28 -14.08 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 19 C 0.07 1.84 5.15 -17.82 -0.09 1.75 16 20 N -0.88 -24.03 9.35 55.43 0.52 -23.51 16 21 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.08 1.26 5.52 -51.93 -0.29 0.97 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 34 H 0.08 1.03 8.12 -51.93 -0.42 0.61 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.05 1.25 8.13 -51.93 -0.42 0.83 16 37 H 0.05 1.25 8.13 -51.93 -0.42 0.83 16 38 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 39 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 43 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 44 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 337.95 15.07 5.09 5.09 Total: -1.00 -27.94 337.95 -8.10 -36.04 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -8.02 Total: -0.90 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -0.08 Total: -14.85 kcal Atomic # 7 Polarization: -24.03 SS G_CDS: 0.52 Total: -23.51 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.60 Total: -17.77 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.94 -8.10 -36.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820626501.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.000 kcal (2) G-P(sol) polarization free energy of solvation -27.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds