Wall clock time and date at job start Mon Mar 30 2020 01:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46409 * 2 1 4 4 C 1.52997 * 109.47431 * 119.99672 * 2 1 3 5 5 C 1.52997 * 109.47080 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47342 * 300.00267 * 5 4 2 7 7 C 1.52997 * 109.47255 * 60.00235 * 6 5 4 8 8 C 1.52999 * 109.47327 * 240.00579 * 2 1 3 9 9 H 1.09009 * 109.46302 * 299.99541 * 8 2 1 10 10 C 1.50696 * 109.47581 * 59.99136 * 8 2 1 11 11 O 1.20833 * 119.99595 * 0.02562 * 10 8 2 12 12 O 1.34224 * 120.00302 * 180.02562 * 10 8 2 13 13 C 1.45206 * 117.00077 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.46777 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47317 * 299.99939 * 14 13 12 16 16 C 1.52997 * 109.47269 * 60.00284 * 14 13 12 17 17 C 1.50706 * 109.46953 * 180.02562 * 14 13 12 18 18 H 1.07999 * 119.99816 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00344 * 180.02562 * 17 14 13 20 20 N 1.31514 * 119.99769 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00300 * 179.97438 * 19 17 14 22 22 H 1.48505 * 109.46819 * 59.99744 * 21 19 17 23 23 H 1.48494 * 109.47285 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47196 * 300.00241 * 21 19 17 25 25 H 1.09001 * 109.46747 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47013 * 299.99555 * 1 2 3 27 27 H 1.08994 * 109.47539 * 60.00291 * 1 2 3 28 28 H 1.09002 * 109.46566 * 60.00707 * 4 2 1 29 29 H 1.08995 * 109.47152 * 300.00377 * 4 2 1 30 30 H 1.09004 * 109.47195 * 180.02562 * 5 4 2 31 31 H 1.08997 * 109.47193 * 60.00531 * 5 4 2 32 32 H 1.08997 * 109.47192 * 300.00265 * 6 5 4 33 33 H 1.09008 * 109.47310 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47657 * 179.97438 * 7 6 5 35 35 H 1.09005 * 109.47379 * 59.99413 * 7 6 5 36 36 H 1.09000 * 109.47070 * 300.00162 * 13 12 10 37 37 H 1.09001 * 109.46626 * 60.00180 * 13 12 10 38 38 H 1.09002 * 109.47153 * 60.00359 * 15 14 13 39 39 H 1.09001 * 109.46832 * 180.02562 * 15 14 13 40 40 H 1.08992 * 109.47303 * 299.99871 * 15 14 13 41 41 H 1.09000 * 109.47140 * 59.99453 * 16 14 13 42 42 H 1.09001 * 109.47375 * 179.97438 * 16 14 13 43 43 H 1.09002 * 109.47497 * 299.99829 * 16 14 13 44 44 H 0.97000 * 120.00540 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5700 -0.7205 1.2495 6 6 4.0806 -1.4414 0.0003 7 6 3.5706 -0.7202 -1.2490 8 6 2.0400 -0.7211 -1.2493 9 1 1.6767 -1.7489 -1.2492 10 6 1.5376 -0.0108 -2.4797 11 8 0.8432 0.9718 -2.3688 12 8 1.8615 -0.4696 -3.6988 13 6 1.3427 0.2649 -4.8389 14 6 1.8143 -0.4020 -6.1326 15 6 3.3436 -0.4014 -6.1786 16 6 1.3032 -1.8433 -6.1791 17 6 1.2764 0.3607 -7.3159 18 1 0.6602 1.2340 -7.1607 19 6 1.5709 -0.0563 -8.5967 20 7 2.3217 -1.1194 -8.7857 21 14 0.9036 0.8887 -10.0634 22 1 1.4001 2.2875 -10.0184 23 1 1.3613 0.2415 -11.3190 24 1 -0.5807 0.8886 -10.0185 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 1.6768 -1.7489 1.2492 29 1 1.6767 -0.2073 2.1392 30 1 3.9335 -1.2347 2.1393 31 1 3.9330 0.3072 1.2497 32 1 3.7176 -2.4692 0.0000 33 1 5.1706 -1.4414 0.0007 34 1 3.9346 -1.2334 -2.1390 35 1 3.9334 0.3077 -1.2487 36 1 0.2532 0.2649 -4.8059 37 1 1.7073 1.2916 -4.8060 38 1 3.7330 -0.9528 -5.3228 39 1 3.6795 -0.8761 -7.1005 40 1 3.7077 0.6254 -6.1456 41 1 0.2137 -1.8437 -6.1463 42 1 1.6388 -2.3183 -7.1010 43 1 1.6926 -2.3947 -5.3233 44 1 2.5292 -1.4126 -9.6867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820626501.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:20 Heat of formation + Delta-G solvation = -139.077528 kcal Electronic energy + Delta-G solvation = -21677.347274 eV Core-core repulsion = 18592.727173 eV Total energy + Delta-G solvation = -3084.620101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.80398 -39.46390 -38.04930 -36.61850 -33.42709 -33.30512 -32.16840 -28.01105 -27.58459 -27.39436 -26.90564 -24.56442 -22.61808 -21.68327 -20.71682 -20.63394 -18.64739 -17.74514 -17.47150 -17.26390 -16.62823 -15.63529 -15.47664 -15.14955 -15.01117 -14.90048 -14.66936 -13.99265 -13.95882 -13.45487 -13.34156 -13.17410 -13.10871 -12.84901 -12.71177 -12.65501 -12.46300 -12.33158 -12.15806 -12.14065 -11.82525 -11.72447 -11.68107 -11.38042 -11.31666 -11.24864 -10.98877 -10.77807 -10.70483 -10.40922 -8.05132 -6.23531 1.24593 1.43928 1.43979 1.51409 1.85997 2.45058 3.17990 3.53817 3.68272 3.76399 4.12025 4.20541 4.24076 4.26735 4.31273 4.39096 4.47513 4.54520 4.58400 4.61997 4.77980 4.83935 4.91650 4.98820 5.03662 5.08180 5.17676 5.19589 5.21309 5.21903 5.30698 5.33223 5.36591 5.40002 5.45447 5.58319 5.61550 5.62709 5.76859 6.06649 6.16829 6.36321 6.77985 6.86539 7.44377 8.94266 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.036454 B = 0.004205 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.902590 B = 6656.501495 C = 7074.837571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.071 4.071 3 H 0.061 0.939 4 C -0.107 4.107 5 C -0.121 4.121 6 C -0.112 4.112 7 C -0.111 4.111 8 C -0.069 4.069 9 H 0.119 0.881 10 C 0.450 3.550 11 O -0.540 6.540 12 O -0.352 6.352 13 C 0.097 3.903 14 C 0.061 3.939 15 C -0.116 4.116 16 C -0.117 4.117 17 C -0.537 4.537 18 H 0.047 0.953 19 C 0.029 3.971 20 N -0.898 5.898 21 Si 0.952 3.048 22 H -0.275 1.275 23 H -0.280 1.280 24 H -0.275 1.275 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.032 0.968 39 H 0.063 0.937 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.063 0.937 43 H 0.032 0.968 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.543 -2.455 19.049 19.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.090 4.090 3 H 0.080 0.920 4 C -0.144 4.144 5 C -0.158 4.158 6 C -0.149 4.149 7 C -0.149 4.149 8 C -0.088 4.088 9 H 0.137 0.863 10 C 0.296 3.704 11 O -0.430 6.430 12 O -0.268 6.268 13 C 0.024 3.976 14 C 0.061 3.939 15 C -0.174 4.174 16 C -0.175 4.175 17 C -0.575 4.575 18 H 0.066 0.934 19 C -0.171 4.171 20 N -0.536 5.536 21 Si 0.778 3.222 22 H -0.201 1.201 23 H -0.205 1.205 24 H -0.200 1.200 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.082 0.918 43 H 0.051 0.949 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.421 -2.280 18.877 19.168 hybrid contribution -0.659 0.904 -1.375 1.773 sum 1.762 -1.376 17.503 17.645 Atomic orbital electron populations 1.22049 0.95143 1.02062 1.02493 1.21000 0.95909 0.99117 0.92961 0.92013 1.21586 0.95907 1.01048 0.95850 1.21593 0.95118 1.00936 0.98194 1.21528 1.01144 0.99585 0.92687 1.21546 0.91066 1.01733 1.00518 1.21308 0.98501 1.00996 0.88001 0.86287 1.24644 0.76885 0.82891 0.86027 1.90549 1.37178 1.27644 1.87663 1.86520 1.69278 1.55769 1.15270 1.23194 0.96866 0.94212 0.83356 1.18261 0.93801 0.93522 0.88365 1.21598 0.96896 0.98309 1.00613 1.21604 0.97568 0.97680 1.00612 1.21173 1.32523 1.12420 0.91347 0.93449 1.25498 0.95034 0.95762 1.00788 1.69927 1.37240 1.24474 1.22000 0.85716 0.78735 0.78887 0.78895 1.20057 1.20535 1.20041 0.92192 0.91443 0.93313 0.90669 0.90396 0.89926 0.92284 0.90641 0.90448 0.91206 0.92348 0.93604 0.93670 0.94854 0.91798 0.96314 0.96286 0.91782 0.94887 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 8.87 71.98 0.64 -3.09 16 2 C -0.07 -1.56 1.89 -10.79 -0.02 -1.58 16 3 H 0.06 1.53 8.10 -2.38 -0.02 1.51 16 4 C -0.11 -1.59 5.20 30.59 0.16 -1.43 16 5 C -0.12 -1.64 5.92 30.59 0.18 -1.46 16 6 C -0.11 -1.72 5.92 30.59 0.18 -1.54 16 7 C -0.11 -2.44 5.14 30.61 0.16 -2.29 16 8 C -0.07 -1.73 2.17 -11.52 -0.02 -1.75 16 9 H 0.12 2.62 8.14 -2.38 -0.02 2.61 16 10 C 0.45 15.93 6.96 71.23 0.50 16.42 16 11 O -0.54 -21.70 13.41 21.94 0.29 -21.41 16 12 O -0.35 -14.15 8.78 -51.35 -0.45 -14.61 16 13 C 0.10 4.45 4.26 71.98 0.31 4.75 16 14 C 0.06 3.04 0.58 -52.93 -0.03 3.01 16 15 C -0.12 -5.66 8.11 71.98 0.58 -5.08 16 16 C -0.12 -5.69 8.11 71.98 0.58 -5.10 16 17 C -0.54 -29.27 8.01 25.60 0.21 -29.07 16 18 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 19 C 0.03 1.58 5.15 84.65 0.44 2.01 16 20 N -0.90 -49.14 9.35 21.45 0.20 -48.94 16 21 Si 0.95 42.92 29.54 68.60 2.03 44.95 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.05 1.48 5.52 -2.39 -0.01 1.47 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.07 1.69 8.12 -2.39 -0.02 1.67 16 35 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.05 2.14 8.13 -2.39 -0.02 2.12 16 37 H 0.04 2.11 8.13 -2.39 -0.02 2.09 16 38 H 0.03 1.46 7.68 -2.39 -0.02 1.44 16 39 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 40 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.06 3.37 6.07 -2.39 -0.01 3.36 16 43 H 0.03 1.45 7.68 -2.39 -0.02 1.43 16 44 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -59.86 337.95 6.86 -53.00 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.94 Total: 13.19 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: 3.85 Total: -26.18 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.20 Total: -48.94 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.16 Total: -36.01 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -59.86 6.86 -53.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820626501.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.078 kcal (2) G-P(sol) polarization free energy of solvation -59.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds