Wall clock time and date at job start Mon Mar 30 2020 01:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47452 * 59.99878 * 5 4 2 7 7 C 1.53006 * 109.46542 * 300.00026 * 6 5 4 8 8 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 9 9 H 1.09001 * 109.47066 * 60.00169 * 8 2 1 10 10 C 1.50696 * 109.47490 * 300.00187 * 8 2 1 11 11 O 1.20838 * 119.99699 * 359.97438 * 10 8 2 12 12 O 1.34223 * 120.00706 * 179.97438 * 10 8 2 13 13 C 1.45198 * 117.00475 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.47410 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.47128 * 299.99896 * 14 13 12 16 16 C 1.52994 * 109.47275 * 59.99749 * 14 13 12 17 17 C 1.50706 * 109.47391 * 180.02562 * 14 13 12 18 18 H 1.07995 * 119.99780 * 359.97438 * 17 14 13 19 19 C 1.37876 * 119.99886 * 180.02562 * 17 14 13 20 20 N 1.31506 * 120.00219 * 359.97438 * 19 17 14 21 21 Si 1.86805 * 119.99597 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.46989 * 59.99701 * 21 19 17 23 23 H 1.48498 * 109.46709 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47040 * 299.99534 * 21 19 17 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 30 30 H 1.09001 * 109.47289 * 299.99953 * 5 4 2 31 31 H 1.09002 * 109.47153 * 179.97438 * 5 4 2 32 32 H 1.09000 * 109.47360 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.47061 * 59.99332 * 6 5 4 34 34 H 1.09001 * 109.47369 * 299.99416 * 7 6 5 35 35 H 1.09004 * 109.46785 * 179.97438 * 7 6 5 36 36 H 1.09005 * 109.47177 * 299.99926 * 13 12 10 37 37 H 1.08999 * 109.47324 * 59.99712 * 13 12 10 38 38 H 1.08999 * 109.46953 * 59.99782 * 15 14 13 39 39 H 1.09000 * 109.47103 * 179.97438 * 15 14 13 40 40 H 1.08999 * 109.46913 * 299.99808 * 15 14 13 41 41 H 1.09002 * 109.47522 * 60.00098 * 16 14 13 42 42 H 1.09000 * 109.47434 * 180.02562 * 16 14 13 43 43 H 1.08999 * 109.47530 * 300.00107 * 16 14 13 44 44 H 0.97007 * 120.00134 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5700 -0.7206 -1.2497 6 6 4.0806 -1.4416 -0.0005 7 6 3.5705 -0.7203 1.2488 8 6 2.0400 -0.7212 1.2491 9 1 1.6768 -1.7489 1.2491 10 6 1.5378 -0.0110 2.4797 11 8 0.8434 0.9717 2.3689 12 8 1.8616 -0.4698 3.6987 13 6 1.3421 0.2640 4.8389 14 6 1.8127 -0.4036 6.1326 15 6 1.3016 -1.8450 6.1779 16 6 3.3419 -0.4031 6.1797 17 6 1.2729 0.3577 7.3159 18 1 0.6562 1.2305 7.1607 19 6 1.5672 -0.0597 8.5966 20 7 2.3186 -1.1223 8.7856 21 14 0.8987 0.8844 10.0633 22 1 -0.5856 0.8834 10.0178 23 1 1.3554 0.2363 11.3190 24 1 1.3944 2.2835 10.0192 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.6767 -1.7489 -1.2494 29 1 1.6767 -0.2073 -2.1392 30 1 3.9330 0.3072 -1.2498 31 1 3.9333 -1.2348 -2.1395 32 1 5.1706 -1.4408 -0.0005 33 1 3.7176 -2.4693 -0.0002 34 1 3.9335 0.3075 1.2487 35 1 3.9339 -1.2342 2.1388 36 1 1.7058 1.2910 4.8064 37 1 0.2526 0.2632 4.8056 38 1 1.6916 -2.3959 5.3220 39 1 1.6373 -2.3207 7.0994 40 1 0.2121 -1.8454 6.1444 41 1 3.7062 0.6238 6.1474 42 1 3.6773 -0.8791 7.1011 43 1 3.7320 -0.9540 5.3238 44 1 2.5254 -1.4161 9.6866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820626502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:24 Heat of formation + Delta-G solvation = -127.048276 kcal Electronic energy + Delta-G solvation = -21676.771839 eV Core-core repulsion = 18592.673365 eV Total energy + Delta-G solvation = -3084.098474 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.43638 -38.29938 -36.42557 -34.83611 -32.52189 -31.52617 -31.01170 -26.86135 -25.65877 -25.60527 -25.07469 -23.48709 -21.58945 -20.62604 -19.62883 -18.81066 -17.17783 -16.02897 -15.76784 -15.73127 -14.81802 -14.64760 -14.50189 -14.28893 -13.56194 -13.45302 -12.92023 -12.78845 -12.54789 -12.28807 -11.95621 -11.78071 -11.56345 -11.45097 -11.25924 -11.11696 -10.97731 -10.90698 -10.72804 -10.69110 -10.53915 -10.38538 -10.17699 -10.16871 -9.85412 -9.65061 -9.37980 -9.23795 -8.74927 -8.36458 -6.00841 -4.12475 2.67124 3.27497 3.29979 3.34357 3.39815 4.38968 4.51283 4.58987 4.71708 4.99201 5.06756 5.25410 5.25972 5.30453 5.36515 5.37936 5.50409 5.66265 5.70974 5.85131 5.92003 5.94728 6.01070 6.03969 6.13082 6.13527 6.14456 6.24164 6.38151 6.44617 6.50332 6.78504 6.99846 7.12958 7.15424 7.20839 7.43003 7.63657 7.70851 8.06296 8.17286 8.32803 8.41929 8.87242 9.52922 11.00258 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.036458 B = 0.004205 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.829125 B = 6656.665367 C = 7075.105888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.074 4.074 3 H 0.076 0.924 4 C -0.113 4.113 5 C -0.123 4.123 6 C -0.117 4.117 7 C -0.112 4.112 8 C -0.075 4.075 9 H 0.103 0.897 10 C 0.456 3.544 11 O -0.517 6.517 12 O -0.347 6.347 13 C 0.084 3.916 14 C 0.070 3.930 15 C -0.129 4.129 16 C -0.128 4.128 17 C -0.513 4.513 18 H 0.056 0.944 19 C 0.069 3.931 20 N -0.882 5.882 21 Si 0.895 3.105 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 H 0.082 0.918 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.016 0.984 39 H 0.083 0.917 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.083 0.917 43 H 0.016 0.984 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.167 -1.757 -17.359 17.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.092 4.092 3 H 0.095 0.905 4 C -0.150 4.150 5 C -0.160 4.160 6 C -0.155 4.155 7 C -0.150 4.150 8 C -0.095 4.095 9 H 0.121 0.879 10 C 0.300 3.700 11 O -0.407 6.407 12 O -0.263 6.263 13 C 0.011 3.989 14 C 0.070 3.930 15 C -0.186 4.186 16 C -0.186 4.186 17 C -0.551 4.551 18 H 0.074 0.926 19 C -0.133 4.133 20 N -0.520 5.520 21 Si 0.723 3.277 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.203 1.203 25 H 0.101 0.899 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.035 0.965 39 H 0.102 0.898 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.102 0.898 43 H 0.035 0.965 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.042 -1.579 -17.172 17.365 hybrid contribution -0.528 0.675 0.896 1.239 sum 1.514 -0.904 -16.277 16.372 Atomic orbital electron populations 1.22093 0.94675 1.01645 1.03462 1.20976 0.96313 0.99621 0.92299 0.90512 1.21609 0.95445 1.00742 0.97237 1.21587 0.95708 1.00903 0.97810 1.21536 1.00461 0.99460 0.93994 1.21534 0.92317 1.01848 0.99272 1.21110 0.97518 1.00758 0.90078 0.87878 1.23593 0.77593 0.82949 0.85876 1.90549 1.36178 1.26404 1.87557 1.86520 1.69031 1.55908 1.14834 1.23633 0.97587 0.94785 0.82860 1.18231 0.93572 0.93379 0.87844 1.21761 0.97904 0.97904 1.01056 1.21756 0.97160 0.98622 1.01057 1.20908 1.31959 1.12213 0.89999 0.92618 1.24848 0.94828 0.94979 0.98637 1.69819 1.36917 1.23792 1.21508 0.86610 0.79372 0.80061 0.81681 1.20257 1.21202 1.20253 0.89907 0.93323 0.92969 0.91803 0.91696 0.91922 0.92010 0.91556 0.91649 0.91506 0.90084 0.92700 0.92709 0.96475 0.89784 0.95906 0.95909 0.89790 0.96466 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 8.87 37.16 0.33 -1.65 16 2 C -0.07 -0.86 1.89 -90.62 -0.17 -1.03 16 3 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 4 C -0.11 -1.02 5.20 -26.73 -0.14 -1.16 16 5 C -0.12 -1.04 5.92 -26.73 -0.16 -1.19 16 6 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 7 C -0.11 -1.32 5.14 -26.70 -0.14 -1.46 16 8 C -0.08 -0.99 2.17 -91.75 -0.20 -1.19 16 9 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 10 C 0.46 8.07 6.96 36.00 0.25 8.32 16 11 O -0.52 -10.20 13.41 -18.76 -0.25 -10.45 16 12 O -0.35 -6.98 8.78 -39.24 -0.34 -7.32 16 13 C 0.08 1.89 4.26 37.16 0.16 2.05 16 14 C 0.07 1.73 0.58 -155.66 -0.09 1.64 16 15 C -0.13 -3.12 8.11 37.16 0.30 -2.82 16 16 C -0.13 -3.10 8.11 37.15 0.30 -2.80 16 17 C -0.51 -13.81 8.01 -34.44 -0.28 -14.08 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.07 1.84 5.15 -17.82 -0.09 1.75 16 20 N -0.88 -24.03 9.35 55.43 0.52 -23.51 16 21 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H 0.08 1.26 5.52 -51.93 -0.29 0.97 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.03 8.12 -51.93 -0.42 0.61 16 36 H 0.05 1.25 8.13 -51.93 -0.42 0.83 16 37 H 0.05 1.25 8.13 -51.93 -0.42 0.82 16 38 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 39 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 43 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 44 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 337.95 15.07 5.09 5.09 Total: -1.00 -27.94 337.95 -8.10 -36.05 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -8.02 Total: -0.90 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -0.08 Total: -14.85 kcal Atomic # 7 Polarization: -24.03 SS G_CDS: 0.52 Total: -23.51 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.60 Total: -17.77 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.94 -8.10 -36.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820626502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.002 kcal (2) G-P(sol) polarization free energy of solvation -27.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds