Wall clock time and date at job start Mon Mar 30 2020 01:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47452 * 59.99878 * 5 4 2 7 7 C 1.53006 * 109.46542 * 300.00026 * 6 5 4 8 8 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 9 9 H 1.09001 * 109.47066 * 60.00169 * 8 2 1 10 10 C 1.50696 * 109.47490 * 300.00187 * 8 2 1 11 11 O 1.20838 * 119.99699 * 359.97438 * 10 8 2 12 12 O 1.34223 * 120.00706 * 179.97438 * 10 8 2 13 13 C 1.45198 * 117.00475 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.47410 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.47128 * 299.99896 * 14 13 12 16 16 C 1.52994 * 109.47275 * 59.99749 * 14 13 12 17 17 C 1.50706 * 109.47391 * 180.02562 * 14 13 12 18 18 H 1.07995 * 119.99780 * 359.97438 * 17 14 13 19 19 C 1.37876 * 119.99886 * 180.02562 * 17 14 13 20 20 N 1.31506 * 120.00219 * 359.97438 * 19 17 14 21 21 Si 1.86805 * 119.99597 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.46989 * 59.99701 * 21 19 17 23 23 H 1.48498 * 109.46709 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47040 * 299.99534 * 21 19 17 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 30 30 H 1.09001 * 109.47289 * 299.99953 * 5 4 2 31 31 H 1.09002 * 109.47153 * 179.97438 * 5 4 2 32 32 H 1.09000 * 109.47360 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.47061 * 59.99332 * 6 5 4 34 34 H 1.09001 * 109.47369 * 299.99416 * 7 6 5 35 35 H 1.09004 * 109.46785 * 179.97438 * 7 6 5 36 36 H 1.09005 * 109.47177 * 299.99926 * 13 12 10 37 37 H 1.08999 * 109.47324 * 59.99712 * 13 12 10 38 38 H 1.08999 * 109.46953 * 59.99782 * 15 14 13 39 39 H 1.09000 * 109.47103 * 179.97438 * 15 14 13 40 40 H 1.08999 * 109.46913 * 299.99808 * 15 14 13 41 41 H 1.09002 * 109.47522 * 60.00098 * 16 14 13 42 42 H 1.09000 * 109.47434 * 180.02562 * 16 14 13 43 43 H 1.08999 * 109.47530 * 300.00107 * 16 14 13 44 44 H 0.97007 * 120.00134 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5700 -0.7206 -1.2497 6 6 4.0806 -1.4416 -0.0005 7 6 3.5705 -0.7203 1.2488 8 6 2.0400 -0.7212 1.2491 9 1 1.6768 -1.7489 1.2491 10 6 1.5378 -0.0110 2.4797 11 8 0.8434 0.9717 2.3689 12 8 1.8616 -0.4698 3.6987 13 6 1.3421 0.2640 4.8389 14 6 1.8127 -0.4036 6.1326 15 6 1.3016 -1.8450 6.1779 16 6 3.3419 -0.4031 6.1797 17 6 1.2729 0.3577 7.3159 18 1 0.6562 1.2305 7.1607 19 6 1.5672 -0.0597 8.5966 20 7 2.3186 -1.1223 8.7856 21 14 0.8987 0.8844 10.0633 22 1 -0.5856 0.8834 10.0178 23 1 1.3554 0.2363 11.3190 24 1 1.3944 2.2835 10.0192 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.6767 -1.7489 -1.2494 29 1 1.6767 -0.2073 -2.1392 30 1 3.9330 0.3072 -1.2498 31 1 3.9333 -1.2348 -2.1395 32 1 5.1706 -1.4408 -0.0005 33 1 3.7176 -2.4693 -0.0002 34 1 3.9335 0.3075 1.2487 35 1 3.9339 -1.2342 2.1388 36 1 1.7058 1.2910 4.8064 37 1 0.2526 0.2632 4.8056 38 1 1.6916 -2.3959 5.3220 39 1 1.6373 -2.3207 7.0994 40 1 0.2121 -1.8454 6.1444 41 1 3.7062 0.6238 6.1474 42 1 3.6773 -0.8791 7.1011 43 1 3.7320 -0.9540 5.3238 44 1 2.5254 -1.4161 9.6866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820626502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:23 Heat of formation + Delta-G solvation = -139.081648 kcal Electronic energy + Delta-G solvation = -21677.293645 eV Core-core repulsion = 18592.673365 eV Total energy + Delta-G solvation = -3084.620280 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.80389 -39.46407 -38.04890 -36.61859 -33.42688 -33.30564 -32.16866 -28.01106 -27.58414 -27.39461 -26.90564 -24.56389 -22.61826 -21.68315 -20.71681 -20.63408 -18.64737 -17.74512 -17.47129 -17.26405 -16.62807 -15.63516 -15.47711 -15.14933 -15.01134 -14.90033 -14.66945 -13.99260 -13.95928 -13.45490 -13.34166 -13.17361 -13.10866 -12.84911 -12.71174 -12.65518 -12.46297 -12.33114 -12.15797 -12.14060 -11.82572 -11.72465 -11.68113 -11.38097 -11.31674 -11.24826 -10.98866 -10.77823 -10.70475 -10.40965 -8.05138 -6.23526 1.24566 1.43932 1.43987 1.51407 1.85969 2.45055 3.18019 3.53813 3.68330 3.76377 4.12029 4.20545 4.24035 4.26768 4.31239 4.39113 4.47492 4.54526 4.58418 4.61999 4.77989 4.83969 4.91640 4.98801 5.03642 5.08172 5.17667 5.19572 5.21291 5.21866 5.30700 5.33220 5.36586 5.39972 5.45433 5.58308 5.61542 5.62765 5.76862 6.06575 6.16849 6.36296 6.77982 6.86531 7.44397 8.94248 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.036458 B = 0.004205 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.829125 B = 6656.665367 C = 7075.105888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.071 4.071 3 H 0.061 0.939 4 C -0.107 4.107 5 C -0.121 4.121 6 C -0.112 4.112 7 C -0.111 4.111 8 C -0.069 4.069 9 H 0.119 0.881 10 C 0.450 3.550 11 O -0.540 6.540 12 O -0.352 6.352 13 C 0.097 3.903 14 C 0.061 3.939 15 C -0.117 4.117 16 C -0.116 4.116 17 C -0.537 4.537 18 H 0.047 0.953 19 C 0.030 3.970 20 N -0.898 5.898 21 Si 0.952 3.048 22 H -0.275 1.275 23 H -0.280 1.280 24 H -0.275 1.275 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.032 0.968 39 H 0.063 0.937 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.063 0.937 43 H 0.032 0.968 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.553 -2.448 -19.049 19.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.090 4.090 3 H 0.080 0.920 4 C -0.144 4.144 5 C -0.158 4.158 6 C -0.149 4.149 7 C -0.149 4.149 8 C -0.088 4.088 9 H 0.137 0.863 10 C 0.296 3.704 11 O -0.430 6.430 12 O -0.268 6.268 13 C 0.024 3.976 14 C 0.061 3.939 15 C -0.175 4.175 16 C -0.174 4.174 17 C -0.575 4.575 18 H 0.066 0.934 19 C -0.171 4.171 20 N -0.536 5.536 21 Si 0.778 3.222 22 H -0.200 1.200 23 H -0.205 1.205 24 H -0.200 1.200 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.082 0.918 43 H 0.051 0.949 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.431 -2.272 -18.878 19.169 hybrid contribution -0.660 0.903 1.375 1.772 sum 1.771 -1.369 -17.503 17.646 Atomic orbital electron populations 1.22050 0.95143 1.02061 1.02493 1.20999 0.95909 0.99118 0.92962 0.92011 1.21587 0.95908 1.01048 0.95849 1.21596 0.95117 1.00935 0.98195 1.21532 1.01140 0.99585 0.92685 1.21550 0.91066 1.01732 1.00521 1.21306 0.98507 1.00995 0.87997 0.86288 1.24647 0.76883 0.82892 0.86028 1.90551 1.37182 1.27638 1.87667 1.86518 1.69247 1.55801 1.15269 1.23192 0.96860 0.94222 0.83355 1.18261 0.93798 0.93523 0.88366 1.21604 0.97567 0.97681 1.00607 1.21598 0.96893 0.98308 1.00618 1.21172 1.32466 1.12486 0.91345 0.93447 1.25496 0.95031 0.95761 1.00788 1.69927 1.37229 1.24479 1.21997 0.85718 0.78735 0.78892 0.78897 1.20048 1.20536 1.20046 0.93314 0.92192 0.91442 0.90669 0.90397 0.92283 0.89926 0.90447 0.90636 0.92341 0.91207 0.93665 0.93612 0.94898 0.91787 0.96278 0.96310 0.91797 0.94859 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 8.87 71.98 0.64 -3.10 16 2 C -0.07 -1.56 1.89 -10.79 -0.02 -1.58 16 3 H 0.06 1.53 8.10 -2.39 -0.02 1.52 16 4 C -0.11 -1.59 5.20 30.60 0.16 -1.43 16 5 C -0.12 -1.64 5.92 30.60 0.18 -1.46 16 6 C -0.11 -1.72 5.92 30.60 0.18 -1.54 16 7 C -0.11 -2.45 5.14 30.61 0.16 -2.29 16 8 C -0.07 -1.72 2.17 -11.53 -0.02 -1.75 16 9 H 0.12 2.62 8.14 -2.39 -0.02 2.61 16 10 C 0.45 15.93 6.96 71.23 0.50 16.42 16 11 O -0.54 -21.70 13.41 21.93 0.29 -21.41 16 12 O -0.35 -14.15 8.78 -51.35 -0.45 -14.61 16 13 C 0.10 4.45 4.26 71.98 0.31 4.75 16 14 C 0.06 3.04 0.58 -52.93 -0.03 3.01 16 15 C -0.12 -5.69 8.11 71.98 0.58 -5.10 16 16 C -0.12 -5.66 8.11 71.98 0.58 -5.08 16 17 C -0.54 -29.28 8.01 25.60 0.21 -29.07 16 18 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 19 C 0.03 1.58 5.15 84.66 0.44 2.02 16 20 N -0.90 -49.14 9.35 21.45 0.20 -48.94 16 21 Si 0.95 42.92 29.54 68.60 2.03 44.95 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 25 H 0.05 1.48 5.52 -2.39 -0.01 1.47 16 26 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.69 8.12 -2.38 -0.02 1.67 16 36 H 0.04 2.12 8.13 -2.38 -0.02 2.10 16 37 H 0.05 2.14 8.13 -2.39 -0.02 2.12 16 38 H 0.03 1.44 7.68 -2.39 -0.02 1.42 16 39 H 0.06 3.37 6.07 -2.39 -0.01 3.36 16 40 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 43 H 0.03 1.45 7.68 -2.39 -0.02 1.44 16 44 H 0.26 13.74 8.31 -92.70 -0.77 12.97 16 Total: -1.00 -59.86 337.95 6.86 -53.00 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.94 Total: 13.18 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: 3.85 Total: -26.18 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.20 Total: -48.94 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.16 Total: -36.01 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -59.86 6.86 -53.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820626502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.080 kcal (2) G-P(sol) polarization free energy of solvation -59.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds