Wall clock time and date at job start Mon Mar 30 2020 00:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 110.01565 * 2 1 4 4 C 1.54266 * 110.03387 * 238.55874 * 2 1 3 5 5 C 1.55238 * 104.23333 * 264.32654 * 4 2 1 6 6 C 1.54894 * 102.58338 * 322.08174 * 5 4 2 7 7 H 1.09002 * 110.48891 * 279.18596 * 6 5 4 8 8 O 1.45203 * 110.48415 * 156.67741 * 6 5 4 9 9 C 1.34227 * 117.00124 * 93.24030 * 8 6 5 10 10 O 1.20828 * 120.00011 * 0.02562 * 9 8 6 11 11 C 1.50692 * 120.00022 * 179.97438 * 9 8 6 12 12 C 1.53000 * 109.47294 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47454 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.47508 * 180.02562 * 13 12 11 15 15 C 1.50693 * 109.47530 * 180.02562 * 14 13 12 16 16 H 1.08006 * 120.00127 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00455 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99619 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00345 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47423 * 89.99762 * 19 17 15 21 21 H 1.48501 * 109.46787 * 209.99971 * 19 17 15 22 22 H 1.48502 * 109.46907 * 329.99342 * 19 17 15 23 23 C 1.53869 * 110.03578 * 121.38977 * 2 1 3 24 24 H 1.09000 * 109.46969 * 298.61365 * 1 2 3 25 25 H 1.09006 * 109.47185 * 58.61119 * 1 2 3 26 26 H 1.08998 * 109.47196 * 178.60676 * 1 2 3 27 27 H 1.08998 * 109.47085 * 181.39201 * 3 2 1 28 28 H 1.09004 * 109.47111 * 301.39134 * 3 2 1 29 29 H 1.08999 * 109.47152 * 61.39252 * 3 2 1 30 30 H 1.09005 * 110.48526 * 23.00526 * 4 2 1 31 31 H 1.09007 * 110.48724 * 145.51010 * 4 2 1 32 32 H 1.08996 * 110.89448 * 203.79739 * 5 4 2 33 33 H 1.08993 * 110.76342 * 80.31404 * 5 4 2 34 34 H 1.08999 * 109.47530 * 300.00341 * 11 9 8 35 35 H 1.09003 * 109.47329 * 60.00164 * 11 9 8 36 36 H 1.08996 * 109.47644 * 300.00352 * 12 11 9 37 37 H 1.09007 * 109.46624 * 60.00682 * 12 11 9 38 38 H 1.08996 * 109.47137 * 300.00852 * 13 12 11 39 39 H 1.09003 * 109.46575 * 60.00315 * 13 12 11 40 40 H 1.09009 * 109.47037 * 300.00550 * 14 13 12 41 41 H 1.09003 * 109.46902 * 59.99933 * 14 13 12 42 42 H 0.97002 * 119.99509 * 180.02562 * 18 17 15 43 43 H 1.09001 * 110.02983 * 0.02562 * 23 2 1 44 44 H 1.08995 * 110.03881 * 238.57426 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4377 0.0000 4 6 2.0585 -0.7560 -1.2365 5 6 2.3290 -2.1940 -0.7179 6 6 2.8875 -1.9403 0.7044 7 1 3.9441 -1.6763 0.6579 8 8 2.6937 -3.1100 1.5425 9 6 3.7052 -3.9903 1.6035 10 8 4.7191 -3.7899 0.9777 11 6 3.5766 -5.2280 2.4535 12 6 4.8590 -6.0556 2.3467 13 6 4.7287 -7.3119 3.2101 14 6 6.0113 -8.1392 3.1038 15 6 5.8828 -9.3769 3.9537 16 1 4.9770 -9.5555 4.5142 17 6 6.9219 -10.2809 4.0169 18 7 8.0252 -10.0632 3.3349 19 14 6.7623 -11.8155 5.0699 20 1 6.1832 -12.9154 4.2575 21 1 8.1034 -12.2184 5.5642 22 1 5.8734 -11.5327 6.2254 23 6 2.0571 -0.7529 1.2340 24 1 -0.3633 0.4922 0.9022 25 1 -0.3634 0.5353 -0.8773 26 1 -0.3633 -1.0273 -0.0250 27 1 3.1433 1.4274 -0.0250 28 1 1.6751 1.9623 -0.8773 29 1 1.7157 1.9475 0.9022 30 1 1.3061 -0.7704 -2.0252 31 1 2.9799 -0.2992 -1.5979 32 1 3.0689 -2.6985 -1.3392 33 1 1.4041 -2.7689 -0.6729 34 1 3.4149 -4.9403 3.4923 35 1 2.7314 -5.8218 2.1052 36 1 5.0203 -6.3434 1.3078 37 1 5.7044 -5.4620 2.6948 38 1 4.5676 -7.0238 4.2489 39 1 3.8832 -7.9056 2.8625 40 1 6.1728 -8.4273 2.0650 41 1 6.8566 -7.5453 3.4517 42 1 8.7561 -10.6994 3.3790 43 1 1.2230 -1.1188 1.8327 44 1 2.6867 -0.0945 1.8325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820658867.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:21 Heat of formation + Delta-G solvation = -137.838593 kcal Electronic energy + Delta-G solvation = -20098.335490 eV Core-core repulsion = 17013.769113 eV Total energy + Delta-G solvation = -3084.566377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.65424 -38.99627 -36.34973 -34.94462 -32.69425 -31.95379 -29.93971 -28.92182 -27.68589 -25.97330 -24.59052 -22.91178 -21.19437 -20.35877 -20.00393 -19.13570 -17.64442 -16.37007 -16.20650 -16.15336 -15.44307 -14.84934 -14.49622 -14.40663 -14.15012 -13.70338 -13.53835 -13.15463 -12.73825 -12.62709 -12.31427 -12.11122 -11.95507 -11.85480 -11.70172 -11.62270 -11.23230 -10.99924 -10.93307 -10.84781 -10.79876 -10.59338 -10.56025 -10.44797 -10.43565 -10.23832 -9.63702 -9.27433 -9.01123 -8.30937 -5.95778 -3.98289 2.34189 2.70614 3.34245 3.40265 3.43573 4.10564 4.18055 4.38348 4.48912 4.73186 4.85378 4.87740 4.97955 5.06455 5.13172 5.21804 5.27990 5.30239 5.33662 5.39735 5.41629 5.49639 5.55829 5.61002 5.64244 5.72758 5.74346 5.86315 5.90761 5.96210 6.05440 6.07742 6.22676 6.47129 6.57062 6.78384 6.96651 7.17496 7.73023 7.88039 7.89091 8.05211 8.46966 9.09298 9.65453 11.15570 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.061682 B = 0.002448 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.828915 B =11435.551040 C =11585.729871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.068 4.068 3 C -0.141 4.141 4 C -0.113 4.113 5 C -0.140 4.140 6 C 0.081 3.919 7 H 0.089 0.911 8 O -0.355 6.355 9 C 0.459 3.541 10 O -0.506 6.506 11 C -0.112 4.112 12 C -0.108 4.108 13 C -0.110 4.110 14 C 0.020 3.980 15 C -0.520 4.520 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.113 4.113 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.082 0.918 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.542 22.206 -7.158 28.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.068 4.068 3 C -0.198 4.198 4 C -0.151 4.151 5 C -0.177 4.177 6 C 0.026 3.974 7 H 0.107 0.893 8 O -0.272 6.272 9 C 0.302 3.698 10 O -0.393 6.393 11 C -0.150 4.150 12 C -0.146 4.146 13 C -0.147 4.147 14 C -0.017 4.017 15 C -0.559 4.559 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.151 4.151 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.034 0.966 41 H 0.035 0.965 42 H 0.070 0.930 43 H 0.100 0.900 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.066 22.233 -7.394 27.856 hybrid contribution 0.127 -0.836 0.464 0.965 sum -14.940 21.397 -6.930 27.001 Atomic orbital electron populations 1.21917 0.93875 1.02038 1.01735 1.21122 0.95948 0.95270 0.94509 1.21939 1.01003 0.95004 1.01848 1.22486 1.01313 0.94347 0.96934 1.22946 1.01889 0.97700 0.95204 1.23626 1.00975 0.83460 0.89365 0.89258 1.86585 1.44094 1.32527 1.64034 1.24201 0.80716 0.84676 0.80207 1.90653 1.30300 1.75397 1.42957 1.21603 1.02854 0.90941 0.99590 1.21571 0.94352 0.96716 1.01938 1.21648 1.01243 0.94204 0.97653 1.19098 0.91467 0.93971 0.97199 1.21274 1.00948 1.05844 1.27786 0.92695 1.25048 0.95406 0.98287 0.95876 1.69978 1.05304 1.36434 1.41773 0.86598 0.77287 0.83440 0.80687 1.20698 1.21261 1.19900 1.22366 1.00208 0.94809 0.97692 0.92518 0.92580 0.92309 0.92432 0.92481 0.92492 0.90942 0.91080 0.90741 0.90320 0.87956 0.87964 0.91580 0.91586 0.93218 0.93222 0.96562 0.96547 0.93038 0.89960 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.14 37.16 0.30 -0.56 16 2 C -0.07 -0.48 0.94 -153.39 -0.14 -0.62 16 3 C -0.14 -0.85 8.16 37.16 0.30 -0.55 16 4 C -0.11 -0.85 5.91 -24.88 -0.15 -0.99 16 5 C -0.14 -1.35 6.66 -24.55 -0.16 -1.51 16 6 C 0.08 0.89 3.18 -25.07 -0.08 0.81 16 7 H 0.09 1.09 7.20 -51.93 -0.37 0.72 16 8 O -0.35 -4.59 9.95 -39.25 -0.39 -4.98 16 9 C 0.46 6.78 7.96 36.00 0.29 7.07 16 10 O -0.51 -8.98 15.22 -18.75 -0.29 -9.26 16 11 C -0.11 -1.55 5.81 -27.89 -0.16 -1.71 16 12 C -0.11 -1.91 4.50 -26.73 -0.12 -2.03 16 13 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 14 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 15 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 16 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 17 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 19 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 23 C -0.11 -0.96 5.88 -25.62 -0.15 -1.11 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.36 8.12 -51.93 -0.42 -0.06 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.47 7.84 -51.93 -0.41 0.07 16 31 H 0.07 0.52 7.84 -51.93 -0.41 0.11 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.07 1.23 8.10 -51.93 -0.42 0.80 16 37 H 0.07 1.22 8.10 -51.92 -0.42 0.80 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.08 0.70 7.60 -51.93 -0.39 0.31 16 44 H 0.07 0.59 7.67 -51.93 -0.40 0.19 16 LS Contribution 355.51 15.07 5.36 5.36 Total: -1.00 -31.99 355.51 -8.65 -40.64 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -8.28 Total: -4.88 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -0.76 Total: -16.99 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.74 Total: -26.77 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.68 Total: -14.24 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.99 -8.65 -40.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820658867.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.202 kcal (2) G-P(sol) polarization free energy of solvation -31.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds