Wall clock time and date at job start Mon Mar 30 2020 00:38:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53009 * 110.01565 * 2 1
4 4 C 1.54266 * 110.03387 * 238.55874 * 2 1 3
5 5 C 1.55238 * 104.23333 * 264.32654 * 4 2 1
6 6 C 1.54894 * 102.58338 * 322.08174 * 5 4 2
7 7 H 1.09002 * 110.48891 * 279.18596 * 6 5 4
8 8 O 1.45203 * 110.48415 * 156.67741 * 6 5 4
9 9 C 1.34227 * 117.00124 * 93.24030 * 8 6 5
10 10 O 1.20828 * 120.00011 * 0.02562 * 9 8 6
11 11 C 1.50692 * 120.00022 * 179.97438 * 9 8 6
12 12 C 1.53000 * 109.47294 * 179.97438 * 11 9 8
13 13 C 1.53001 * 109.47454 * 179.97438 * 12 11 9
14 14 C 1.52995 * 109.47508 * 180.02562 * 13 12 11
15 15 C 1.50693 * 109.47530 * 180.02562 * 14 13 12
16 16 H 1.08006 * 120.00127 * 359.97438 * 15 14 13
17 17 C 1.37876 * 120.00455 * 180.02562 * 15 14 13
18 18 N 1.31519 * 119.99619 * 359.97438 * 17 15 14
19 19 Si 1.86802 * 120.00345 * 180.02562 * 17 15 14
20 20 H 1.48497 * 109.47423 * 89.99762 * 19 17 15
21 21 H 1.48501 * 109.46787 * 209.99971 * 19 17 15
22 22 H 1.48502 * 109.46907 * 329.99342 * 19 17 15
23 23 C 1.53869 * 110.03578 * 121.38977 * 2 1 3
24 24 H 1.09000 * 109.46969 * 298.61365 * 1 2 3
25 25 H 1.09006 * 109.47185 * 58.61119 * 1 2 3
26 26 H 1.08998 * 109.47196 * 178.60676 * 1 2 3
27 27 H 1.08998 * 109.47085 * 181.39201 * 3 2 1
28 28 H 1.09004 * 109.47111 * 301.39134 * 3 2 1
29 29 H 1.08999 * 109.47152 * 61.39252 * 3 2 1
30 30 H 1.09005 * 110.48526 * 23.00526 * 4 2 1
31 31 H 1.09007 * 110.48724 * 145.51010 * 4 2 1
32 32 H 1.08996 * 110.89448 * 203.79739 * 5 4 2
33 33 H 1.08993 * 110.76342 * 80.31404 * 5 4 2
34 34 H 1.08999 * 109.47530 * 300.00341 * 11 9 8
35 35 H 1.09003 * 109.47329 * 60.00164 * 11 9 8
36 36 H 1.08996 * 109.47644 * 300.00352 * 12 11 9
37 37 H 1.09007 * 109.46624 * 60.00682 * 12 11 9
38 38 H 1.08996 * 109.47137 * 300.00852 * 13 12 11
39 39 H 1.09003 * 109.46575 * 60.00315 * 13 12 11
40 40 H 1.09009 * 109.47037 * 300.00550 * 14 13 12
41 41 H 1.09003 * 109.46902 * 59.99933 * 14 13 12
42 42 H 0.97002 * 119.99509 * 180.02562 * 18 17 15
43 43 H 1.09001 * 110.02983 * 0.02562 * 23 2 1
44 44 H 1.08995 * 110.03881 * 238.57426 * 23 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0537 1.4377 0.0000
4 6 2.0585 -0.7560 -1.2365
5 6 2.3290 -2.1940 -0.7179
6 6 2.8875 -1.9403 0.7044
7 1 3.9441 -1.6763 0.6579
8 8 2.6937 -3.1100 1.5425
9 6 3.7052 -3.9903 1.6035
10 8 4.7191 -3.7899 0.9777
11 6 3.5766 -5.2280 2.4535
12 6 4.8590 -6.0556 2.3467
13 6 4.7287 -7.3119 3.2101
14 6 6.0113 -8.1392 3.1038
15 6 5.8828 -9.3769 3.9537
16 1 4.9770 -9.5555 4.5142
17 6 6.9219 -10.2809 4.0169
18 7 8.0252 -10.0632 3.3349
19 14 6.7623 -11.8155 5.0699
20 1 6.1832 -12.9154 4.2575
21 1 8.1034 -12.2184 5.5642
22 1 5.8734 -11.5327 6.2254
23 6 2.0571 -0.7529 1.2340
24 1 -0.3633 0.4922 0.9022
25 1 -0.3634 0.5353 -0.8773
26 1 -0.3633 -1.0273 -0.0250
27 1 3.1433 1.4274 -0.0250
28 1 1.6751 1.9623 -0.8773
29 1 1.7157 1.9475 0.9022
30 1 1.3061 -0.7704 -2.0252
31 1 2.9799 -0.2992 -1.5979
32 1 3.0689 -2.6985 -1.3392
33 1 1.4041 -2.7689 -0.6729
34 1 3.4149 -4.9403 3.4923
35 1 2.7314 -5.8218 2.1052
36 1 5.0203 -6.3434 1.3078
37 1 5.7044 -5.4620 2.6948
38 1 4.5676 -7.0238 4.2489
39 1 3.8832 -7.9056 2.8625
40 1 6.1728 -8.4273 2.0650
41 1 6.8566 -7.5453 3.4517
42 1 8.7561 -10.6994 3.3790
43 1 1.2230 -1.1188 1.8327
44 1 2.6867 -0.0945 1.8325
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000820658867.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:38:21
Heat of formation + Delta-G solvation = -153.679254 kcal
Electronic energy + Delta-G solvation = -20099.022392 eV
Core-core repulsion = 17013.769113 eV
Total energy + Delta-G solvation = -3085.253280 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.183 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-41.72132 -39.79603 -37.45681 -36.60998 -34.66752 -32.72745 -31.59295 -29.72021
-28.15282 -27.71315 -25.43779 -24.48643 -22.41633 -21.69732 -21.34484 -19.73002
-18.79523 -18.39561 -17.39777 -17.36037 -16.49396 -16.20433 -15.99732 -15.46957
-14.76944 -14.58139 -14.42437 -14.41673 -14.04858 -13.79963 -13.62507 -13.37448
-13.23773 -12.91821 -12.82833 -12.61219 -12.39518 -12.35297 -12.20769 -12.19471
-11.93020 -11.63559 -11.50502 -11.48917 -11.44599 -11.40164 -11.31287 -11.23298
-11.03325 -10.54736 -8.18808 -6.30617 1.17650 1.40841 1.42921 1.53989
1.66842 2.42181 3.14142 3.41370 3.49039 3.64695 3.81179 3.96724
4.07611 4.15316 4.19870 4.32090 4.37690 4.49559 4.50327 4.58201
4.63009 4.77125 4.80883 4.83965 4.85478 4.89460 4.94340 5.00474
5.04857 5.12091 5.13568 5.18877 5.30869 5.32139 5.36636 5.38532
5.51675 5.54304 5.58190 5.77308 5.87990 6.25351 6.75105 6.87859
7.38960 8.93413
Molecular weight = 268.18amu
Principal moments of inertia in cm(-1)
A = 0.061682 B = 0.002448 C = 0.002416
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 453.828915 B =11435.551040 C =11585.729871
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.065 4.065
3 C -0.140 4.140
4 C -0.109 4.109
5 C -0.139 4.139
6 C 0.070 3.930
7 H 0.071 0.929
8 O -0.350 6.350
9 C 0.462 3.538
10 O -0.544 6.544
11 C -0.103 4.103
12 C -0.100 4.100
13 C -0.096 4.096
14 C 0.018 3.982
15 C -0.541 4.541
16 H 0.066 0.934
17 C -0.007 4.007
18 N -0.938 5.938
19 Si 0.969 3.031
20 H -0.272 1.272
21 H -0.284 1.284
22 H -0.259 1.259
23 C -0.109 4.109
24 H 0.061 0.939
25 H 0.065 0.935
26 H 0.053 0.947
27 H 0.052 0.948
28 H 0.066 0.934
29 H 0.062 0.938
30 H 0.086 0.914
31 H 0.071 0.929
32 H 0.058 0.942
33 H 0.082 0.918
34 H 0.129 0.871
35 H 0.129 0.871
36 H 0.049 0.951
37 H 0.049 0.951
38 H 0.063 0.937
39 H 0.063 0.937
40 H -0.014 1.014
41 H -0.014 1.014
42 H 0.263 0.737
43 H 0.085 0.915
44 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.976 22.645 -6.299 29.591
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.065 4.065
3 C -0.197 4.197
4 C -0.146 4.146
5 C -0.177 4.177
6 C 0.016 3.984
7 H 0.090 0.910
8 O -0.267 6.267
9 C 0.308 3.692
10 O -0.434 6.434
11 C -0.140 4.140
12 C -0.138 4.138
13 C -0.133 4.133
14 C -0.019 4.019
15 C -0.579 4.579
16 H 0.084 0.916
17 C -0.204 4.204
18 N -0.578 5.578
19 Si 0.793 3.207
20 H -0.197 1.197
21 H -0.210 1.210
22 H -0.183 1.183
23 C -0.146 4.146
24 H 0.080 0.920
25 H 0.084 0.916
26 H 0.072 0.928
27 H 0.071 0.929
28 H 0.085 0.915
29 H 0.081 0.919
30 H 0.104 0.896
31 H 0.089 0.911
32 H 0.077 0.923
33 H 0.100 0.900
34 H 0.147 0.853
35 H 0.146 0.854
36 H 0.068 0.932
37 H 0.068 0.932
38 H 0.082 0.918
39 H 0.082 0.918
40 H 0.005 0.995
41 H 0.005 0.995
42 H 0.071 0.929
43 H 0.103 0.897
44 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -17.536 22.691 -6.530 29.411
hybrid contribution 0.909 -0.928 0.155 1.308
sum -16.627 21.763 -6.375 28.120
Atomic orbital electron populations
1.21907 0.92928 1.02009 1.02549 1.21126 0.96644 0.95513 0.93262
1.21930 1.00714 0.94375 1.02655 1.22493 1.01838 0.92745 0.97554
1.22940 1.01384 0.99194 0.94185 1.23896 1.00686 0.83590 0.90256
0.91040 1.86568 1.43115 1.32793 1.64205 1.24345 0.80365 0.84999
0.79541 1.90650 1.31822 1.76306 1.44635 1.21497 1.01151 0.90265
1.01112 1.21349 0.96221 0.96006 1.00192 1.21439 0.98229 0.94520
0.99143 1.19057 0.93656 0.94260 0.94909 1.21752 1.01441 1.06645
1.28059 0.91559 1.26089 0.94932 1.02150 0.97275 1.70132 1.06295
1.37935 1.43458 0.85385 0.77537 0.78732 0.79010 1.19730 1.20979
1.18345 1.22399 0.99889 0.93809 0.98495 0.91955 0.91560 0.92767
0.92928 0.91514 0.91868 0.89565 0.91064 0.92320 0.89970 0.85325
0.85354 0.93215 0.93217 0.91825 0.91812 0.99546 0.99530 0.92864
0.89685 0.90321
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.38 8.14 71.98 0.59 -0.79 16
2 C -0.07 -0.80 0.94 -51.46 -0.05 -0.85 16
3 C -0.14 -1.42 8.16 71.99 0.59 -0.84 16
4 C -0.11 -1.49 5.91 31.79 0.19 -1.30 16
5 C -0.14 -2.63 6.66 32.01 0.21 -2.42 16
6 C 0.07 1.52 3.18 31.67 0.10 1.63 16
7 H 0.07 1.81 7.20 -2.39 -0.02 1.79 16
8 O -0.35 -8.72 9.95 -51.39 -0.51 -9.23 16
9 C 0.46 13.44 7.96 71.23 0.57 14.01 16
10 O -0.54 -19.80 15.22 21.96 0.33 -19.46 16
11 C -0.10 -2.65 5.81 29.85 0.17 -2.48 16
12 C -0.10 -3.53 4.50 30.59 0.14 -3.39 16
13 C -0.10 -3.86 5.15 30.59 0.16 -3.70 16
14 C 0.02 1.00 4.97 29.84 0.15 1.14 16
15 C -0.54 -31.26 9.11 25.60 0.23 -31.02 16
16 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16
17 C -0.01 -0.43 5.46 84.65 0.46 0.03 16
18 N -0.94 -58.89 13.29 21.45 0.28 -58.61 16
19 Si 0.97 44.79 29.54 68.60 2.03 46.82 16
20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16
21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16
22 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16
23 C -0.11 -1.70 5.88 31.32 0.18 -1.52 16
24 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16
25 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16
26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16
27 H 0.05 0.59 8.12 -2.39 -0.02 0.57 16
28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16
29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16
30 H 0.09 0.96 7.84 -2.38 -0.02 0.94 16
31 H 0.07 0.97 7.84 -2.38 -0.02 0.95 16
32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16
33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16
34 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16
35 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16
36 H 0.05 1.89 8.10 -2.39 -0.02 1.88 16
37 H 0.05 1.89 8.10 -2.38 -0.02 1.87 16
38 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16
39 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16
40 H -0.01 -0.83 8.14 -2.38 -0.02 -0.84 16
41 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16
42 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16
43 H 0.08 1.30 7.60 -2.39 -0.02 1.28 16
44 H 0.08 1.16 7.67 -2.39 -0.02 1.14 16
Total: -1.00 -70.34 355.51 6.75 -63.59
By element:
Atomic # 1 Polarization: 7.45 SS G_CDS: 0.93 Total: 8.38 kcal
Atomic # 6 Polarization: -35.18 SS G_CDS: 3.69 Total: -31.49 kcal
Atomic # 7 Polarization: -58.89 SS G_CDS: 0.28 Total: -58.61 kcal
Atomic # 8 Polarization: -28.51 SS G_CDS: -0.18 Total: -28.69 kcal
Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal
Total: -70.34 6.75 -63.59 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000820658867.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -90.093 kcal
(2) G-P(sol) polarization free energy of solvation -70.337 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.430 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.751 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.586 kcal
(6) G-S(sol) free energy of system = (1) + (5) -153.679 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds