Wall clock time and date at job start Mon Mar 30 2020 00:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 110.01565 * 2 1 4 4 C 1.54266 * 110.03387 * 238.55874 * 2 1 3 5 5 C 1.55238 * 104.23333 * 264.32654 * 4 2 1 6 6 C 1.54894 * 102.58338 * 322.08174 * 5 4 2 7 7 H 1.09002 * 110.48891 * 279.18596 * 6 5 4 8 8 O 1.45203 * 110.48415 * 156.67741 * 6 5 4 9 9 C 1.34227 * 117.00124 * 93.24030 * 8 6 5 10 10 O 1.20828 * 120.00011 * 0.02562 * 9 8 6 11 11 C 1.50692 * 120.00022 * 179.97438 * 9 8 6 12 12 C 1.53000 * 109.47294 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47454 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.47508 * 180.02562 * 13 12 11 15 15 C 1.50693 * 109.47530 * 180.02562 * 14 13 12 16 16 H 1.08006 * 120.00127 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00455 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99619 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00345 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47423 * 89.99762 * 19 17 15 21 21 H 1.48501 * 109.46787 * 209.99971 * 19 17 15 22 22 H 1.48502 * 109.46907 * 329.99342 * 19 17 15 23 23 C 1.53869 * 110.03578 * 121.38977 * 2 1 3 24 24 H 1.09000 * 109.46969 * 298.61365 * 1 2 3 25 25 H 1.09006 * 109.47185 * 58.61119 * 1 2 3 26 26 H 1.08998 * 109.47196 * 178.60676 * 1 2 3 27 27 H 1.08998 * 109.47085 * 181.39201 * 3 2 1 28 28 H 1.09004 * 109.47111 * 301.39134 * 3 2 1 29 29 H 1.08999 * 109.47152 * 61.39252 * 3 2 1 30 30 H 1.09005 * 110.48526 * 23.00526 * 4 2 1 31 31 H 1.09007 * 110.48724 * 145.51010 * 4 2 1 32 32 H 1.08996 * 110.89448 * 203.79739 * 5 4 2 33 33 H 1.08993 * 110.76342 * 80.31404 * 5 4 2 34 34 H 1.08999 * 109.47530 * 300.00341 * 11 9 8 35 35 H 1.09003 * 109.47329 * 60.00164 * 11 9 8 36 36 H 1.08996 * 109.47644 * 300.00352 * 12 11 9 37 37 H 1.09007 * 109.46624 * 60.00682 * 12 11 9 38 38 H 1.08996 * 109.47137 * 300.00852 * 13 12 11 39 39 H 1.09003 * 109.46575 * 60.00315 * 13 12 11 40 40 H 1.09009 * 109.47037 * 300.00550 * 14 13 12 41 41 H 1.09003 * 109.46902 * 59.99933 * 14 13 12 42 42 H 0.97002 * 119.99509 * 180.02562 * 18 17 15 43 43 H 1.09001 * 110.02983 * 0.02562 * 23 2 1 44 44 H 1.08995 * 110.03881 * 238.57426 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4377 0.0000 4 6 2.0585 -0.7560 -1.2365 5 6 2.3290 -2.1940 -0.7179 6 6 2.8875 -1.9403 0.7044 7 1 3.9441 -1.6763 0.6579 8 8 2.6937 -3.1100 1.5425 9 6 3.7052 -3.9903 1.6035 10 8 4.7191 -3.7899 0.9777 11 6 3.5766 -5.2280 2.4535 12 6 4.8590 -6.0556 2.3467 13 6 4.7287 -7.3119 3.2101 14 6 6.0113 -8.1392 3.1038 15 6 5.8828 -9.3769 3.9537 16 1 4.9770 -9.5555 4.5142 17 6 6.9219 -10.2809 4.0169 18 7 8.0252 -10.0632 3.3349 19 14 6.7623 -11.8155 5.0699 20 1 6.1832 -12.9154 4.2575 21 1 8.1034 -12.2184 5.5642 22 1 5.8734 -11.5327 6.2254 23 6 2.0571 -0.7529 1.2340 24 1 -0.3633 0.4922 0.9022 25 1 -0.3634 0.5353 -0.8773 26 1 -0.3633 -1.0273 -0.0250 27 1 3.1433 1.4274 -0.0250 28 1 1.6751 1.9623 -0.8773 29 1 1.7157 1.9475 0.9022 30 1 1.3061 -0.7704 -2.0252 31 1 2.9799 -0.2992 -1.5979 32 1 3.0689 -2.6985 -1.3392 33 1 1.4041 -2.7689 -0.6729 34 1 3.4149 -4.9403 3.4923 35 1 2.7314 -5.8218 2.1052 36 1 5.0203 -6.3434 1.3078 37 1 5.7044 -5.4620 2.6948 38 1 4.5676 -7.0238 4.2489 39 1 3.8832 -7.9056 2.8625 40 1 6.1728 -8.4273 2.0650 41 1 6.8566 -7.5453 3.4517 42 1 8.7561 -10.6994 3.3790 43 1 1.2230 -1.1188 1.8327 44 1 2.6867 -0.0945 1.8325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820658867.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:21 Heat of formation + Delta-G solvation = -153.679254 kcal Electronic energy + Delta-G solvation = -20099.022392 eV Core-core repulsion = 17013.769113 eV Total energy + Delta-G solvation = -3085.253280 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.72132 -39.79603 -37.45681 -36.60998 -34.66752 -32.72745 -31.59295 -29.72021 -28.15282 -27.71315 -25.43779 -24.48643 -22.41633 -21.69732 -21.34484 -19.73002 -18.79523 -18.39561 -17.39777 -17.36037 -16.49396 -16.20433 -15.99732 -15.46957 -14.76944 -14.58139 -14.42437 -14.41673 -14.04858 -13.79963 -13.62507 -13.37448 -13.23773 -12.91821 -12.82833 -12.61219 -12.39518 -12.35297 -12.20769 -12.19471 -11.93020 -11.63559 -11.50502 -11.48917 -11.44599 -11.40164 -11.31287 -11.23298 -11.03325 -10.54736 -8.18808 -6.30617 1.17650 1.40841 1.42921 1.53989 1.66842 2.42181 3.14142 3.41370 3.49039 3.64695 3.81179 3.96724 4.07611 4.15316 4.19870 4.32090 4.37690 4.49559 4.50327 4.58201 4.63009 4.77125 4.80883 4.83965 4.85478 4.89460 4.94340 5.00474 5.04857 5.12091 5.13568 5.18877 5.30869 5.32139 5.36636 5.38532 5.51675 5.54304 5.58190 5.77308 5.87990 6.25351 6.75105 6.87859 7.38960 8.93413 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.061682 B = 0.002448 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.828915 B =11435.551040 C =11585.729871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.065 4.065 3 C -0.140 4.140 4 C -0.109 4.109 5 C -0.139 4.139 6 C 0.070 3.930 7 H 0.071 0.929 8 O -0.350 6.350 9 C 0.462 3.538 10 O -0.544 6.544 11 C -0.103 4.103 12 C -0.100 4.100 13 C -0.096 4.096 14 C 0.018 3.982 15 C -0.541 4.541 16 H 0.066 0.934 17 C -0.007 4.007 18 N -0.938 5.938 19 Si 0.969 3.031 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.259 1.259 23 C -0.109 4.109 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.063 0.937 39 H 0.063 0.937 40 H -0.014 1.014 41 H -0.014 1.014 42 H 0.263 0.737 43 H 0.085 0.915 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.976 22.645 -6.299 29.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.065 4.065 3 C -0.197 4.197 4 C -0.146 4.146 5 C -0.177 4.177 6 C 0.016 3.984 7 H 0.090 0.910 8 O -0.267 6.267 9 C 0.308 3.692 10 O -0.434 6.434 11 C -0.140 4.140 12 C -0.138 4.138 13 C -0.133 4.133 14 C -0.019 4.019 15 C -0.579 4.579 16 H 0.084 0.916 17 C -0.204 4.204 18 N -0.578 5.578 19 Si 0.793 3.207 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.183 1.183 23 C -0.146 4.146 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.005 0.995 41 H 0.005 0.995 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.536 22.691 -6.530 29.411 hybrid contribution 0.909 -0.928 0.155 1.308 sum -16.627 21.763 -6.375 28.120 Atomic orbital electron populations 1.21907 0.92928 1.02009 1.02549 1.21126 0.96644 0.95513 0.93262 1.21930 1.00714 0.94375 1.02655 1.22493 1.01838 0.92745 0.97554 1.22940 1.01384 0.99194 0.94185 1.23896 1.00686 0.83590 0.90256 0.91040 1.86568 1.43115 1.32793 1.64205 1.24345 0.80365 0.84999 0.79541 1.90650 1.31822 1.76306 1.44635 1.21497 1.01151 0.90265 1.01112 1.21349 0.96221 0.96006 1.00192 1.21439 0.98229 0.94520 0.99143 1.19057 0.93656 0.94260 0.94909 1.21752 1.01441 1.06645 1.28059 0.91559 1.26089 0.94932 1.02150 0.97275 1.70132 1.06295 1.37935 1.43458 0.85385 0.77537 0.78732 0.79010 1.19730 1.20979 1.18345 1.22399 0.99889 0.93809 0.98495 0.91955 0.91560 0.92767 0.92928 0.91514 0.91868 0.89565 0.91064 0.92320 0.89970 0.85325 0.85354 0.93215 0.93217 0.91825 0.91812 0.99546 0.99530 0.92864 0.89685 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.14 71.98 0.59 -0.79 16 2 C -0.07 -0.80 0.94 -51.46 -0.05 -0.85 16 3 C -0.14 -1.42 8.16 71.99 0.59 -0.84 16 4 C -0.11 -1.49 5.91 31.79 0.19 -1.30 16 5 C -0.14 -2.63 6.66 32.01 0.21 -2.42 16 6 C 0.07 1.52 3.18 31.67 0.10 1.63 16 7 H 0.07 1.81 7.20 -2.39 -0.02 1.79 16 8 O -0.35 -8.72 9.95 -51.39 -0.51 -9.23 16 9 C 0.46 13.44 7.96 71.23 0.57 14.01 16 10 O -0.54 -19.80 15.22 21.96 0.33 -19.46 16 11 C -0.10 -2.65 5.81 29.85 0.17 -2.48 16 12 C -0.10 -3.53 4.50 30.59 0.14 -3.39 16 13 C -0.10 -3.86 5.15 30.59 0.16 -3.70 16 14 C 0.02 1.00 4.97 29.84 0.15 1.14 16 15 C -0.54 -31.26 9.11 25.60 0.23 -31.02 16 16 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 17 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 18 N -0.94 -58.89 13.29 21.45 0.28 -58.61 16 19 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 23 C -0.11 -1.70 5.88 31.32 0.18 -1.52 16 24 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 0.59 8.12 -2.39 -0.02 0.57 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.09 0.96 7.84 -2.38 -0.02 0.94 16 31 H 0.07 0.97 7.84 -2.38 -0.02 0.95 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.05 1.89 8.10 -2.39 -0.02 1.88 16 37 H 0.05 1.89 8.10 -2.38 -0.02 1.87 16 38 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 40 H -0.01 -0.83 8.14 -2.38 -0.02 -0.84 16 41 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 42 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.08 1.30 7.60 -2.39 -0.02 1.28 16 44 H 0.08 1.16 7.67 -2.39 -0.02 1.14 16 Total: -1.00 -70.34 355.51 6.75 -63.59 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 0.93 Total: 8.38 kcal Atomic # 6 Polarization: -35.18 SS G_CDS: 3.69 Total: -31.49 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.28 Total: -58.61 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.18 Total: -28.69 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -70.34 6.75 -63.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820658867.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.093 kcal (2) G-P(sol) polarization free energy of solvation -70.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds