Wall clock time and date at job start Mon Mar 30 2020 00:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47053 * 2 1 4 4 C 1.52996 * 109.47145 * 239.99792 * 2 1 3 5 5 C 1.53006 * 109.46954 * 119.99589 * 2 1 3 6 6 C 1.53000 * 109.46905 * 60.00320 * 5 2 1 7 7 H 1.09005 * 115.56412 * 29.30619 * 6 5 2 8 8 C 1.52999 * 117.49925 * 243.62051 * 6 5 2 9 9 C 1.52998 * 60.00119 * 252.50840 * 8 6 5 10 10 H 1.09002 * 117.50248 * 107.51059 * 9 8 6 11 11 C 1.50706 * 117.50140 * 252.51076 * 9 8 6 12 12 O 1.20824 * 120.00104 * 68.60362 * 11 9 8 13 13 O 1.34230 * 119.99717 * 248.60918 * 11 9 8 14 14 C 1.45199 * 116.99614 * 179.97438 * 13 11 9 15 15 C 1.52997 * 109.47075 * 179.97438 * 14 13 11 16 16 C 1.52992 * 109.47482 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47592 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00057 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00356 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00113 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99923 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47375 * 89.99678 * 21 19 17 23 23 H 1.48508 * 109.47196 * 209.99673 * 21 19 17 24 24 H 1.48504 * 109.47051 * 329.99297 * 21 19 17 25 25 H 1.08996 * 109.46965 * 300.00046 * 1 2 3 26 26 H 1.08996 * 109.47012 * 60.00349 * 1 2 3 27 27 H 1.09000 * 109.46923 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46767 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.46926 * 299.99703 * 3 2 1 30 30 H 1.09006 * 109.47121 * 60.00180 * 3 2 1 31 31 H 1.09000 * 109.47113 * 299.99764 * 4 2 1 32 32 H 1.08996 * 109.47281 * 60.00024 * 4 2 1 33 33 H 1.09003 * 109.46994 * 180.02562 * 4 2 1 34 34 H 1.08995 * 109.47405 * 300.00505 * 5 2 1 35 35 H 1.09007 * 109.47033 * 179.97438 * 5 2 1 36 36 H 1.08997 * 117.50283 * 145.02032 * 8 6 5 37 37 H 1.08999 * 117.50137 * 359.97438 * 8 6 5 38 38 H 1.09002 * 109.47177 * 299.99820 * 14 13 11 39 39 H 1.09001 * 109.47399 * 59.99991 * 14 13 11 40 40 H 1.09002 * 109.47153 * 300.00058 * 15 14 13 41 41 H 1.08998 * 109.47533 * 59.99688 * 15 14 13 42 42 H 1.09002 * 109.47103 * 300.00247 * 16 15 14 43 43 H 1.09001 * 109.47066 * 60.00169 * 16 15 14 44 44 H 0.97008 * 120.00167 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2494 6 6 1.5300 -2.1637 1.2494 7 1 1.3621 -2.6032 0.2661 8 6 0.5860 -2.5793 2.3794 9 6 2.0284 -3.0892 2.3611 10 1 2.7196 -2.6708 3.0927 11 6 2.2497 -4.5387 2.0128 12 8 2.0337 -4.9301 0.8903 13 8 2.6865 -5.3949 2.9498 14 6 2.8767 -6.7759 2.5435 15 6 3.3747 -7.5944 3.7363 16 6 3.5745 -9.0496 3.3084 17 6 4.0656 -9.8558 4.4831 18 1 4.2194 -9.3781 5.4395 19 6 4.3176 -11.2035 4.3374 20 7 4.7467 -11.9069 5.3624 21 14 4.0510 -12.0300 2.6836 22 1 5.3037 -11.9630 1.8889 23 1 3.6745 -13.4509 2.8952 24 1 2.9627 -11.3333 1.9518 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2491 32 1 1.6767 -0.2075 -2.1392 33 1 3.1301 -0.7217 -1.2489 34 1 1.6766 -0.2074 2.1393 35 1 3.1301 -0.7216 1.2491 36 1 -0.2029 -3.2921 2.1397 37 1 0.3286 -1.8251 3.1231 38 1 1.9295 -7.1849 2.1918 39 1 3.6123 -6.8203 1.7404 40 1 4.3219 -7.1853 4.0877 41 1 2.6395 -7.5501 4.5398 42 1 2.6271 -9.4585 2.9574 43 1 4.3096 -9.0944 2.5049 44 1 4.9237 -12.8551 5.2600 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830259106.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:46 Heat of formation + Delta-G solvation = -101.258009 kcal Electronic energy + Delta-G solvation = -19994.085158 eV Core-core repulsion = 16911.105034 eV Total energy + Delta-G solvation = -3082.980124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.55638 -38.86063 -36.79404 -35.67178 -34.06440 -31.84440 -28.39427 -27.65195 -27.58715 -27.48267 -24.89425 -22.72942 -21.56167 -20.44789 -19.93126 -19.08645 -17.58004 -16.95945 -16.37856 -16.29375 -15.07615 -14.99188 -14.86153 -14.23287 -14.19293 -13.78987 -13.57416 -13.08974 -12.75460 -12.64955 -12.45290 -12.33549 -12.07894 -12.04764 -11.87823 -11.83776 -11.32610 -11.09535 -11.05397 -10.95202 -10.78082 -10.58434 -10.45044 -10.38483 -10.31043 -9.97289 -9.78994 -9.71294 -9.24906 -8.56922 -6.07111 -4.06098 2.15624 2.74718 3.29783 3.37298 3.40913 3.52336 4.24322 4.35884 4.42877 4.46335 4.60559 4.63336 4.77244 4.99057 5.05444 5.22948 5.26133 5.27048 5.31160 5.41052 5.45824 5.46807 5.48453 5.50207 5.53265 5.60795 5.67707 5.71400 5.77896 5.87141 5.92399 5.97400 6.05540 6.15564 6.36749 6.39276 6.67919 6.81384 7.21264 7.32466 7.72467 7.91513 8.49760 8.97176 9.54386 11.06025 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.047196 B = 0.002618 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.125826 B =10693.797336 C =10926.840388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.067 4.067 3 C -0.142 4.142 4 C -0.147 4.147 5 C -0.081 4.081 6 C -0.117 4.117 7 H 0.123 0.877 8 C -0.145 4.145 9 C -0.167 4.167 10 H 0.134 0.866 11 C 0.487 3.513 12 O -0.515 6.515 13 O -0.352 6.352 14 C 0.066 3.934 15 C -0.101 4.101 16 C -0.011 4.011 17 C -0.521 4.521 18 H 0.074 0.926 19 C 0.067 3.933 20 N -0.901 5.901 21 Si 0.880 3.120 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.265 1.265 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.019 0.981 43 H 0.015 0.985 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.081 26.656 -10.244 29.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.067 4.067 3 C -0.199 4.199 4 C -0.204 4.204 5 C -0.118 4.118 6 C -0.135 4.135 7 H 0.141 0.859 8 C -0.182 4.182 9 C -0.186 4.186 10 H 0.152 0.848 11 C 0.331 3.669 12 O -0.404 6.404 13 O -0.268 6.268 14 C -0.007 4.007 15 C -0.139 4.139 16 C -0.048 4.048 17 C -0.559 4.559 18 H 0.092 0.908 19 C -0.135 4.135 20 N -0.540 5.540 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.190 1.190 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.037 0.963 43 H 0.033 0.967 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.076 26.304 -10.506 29.454 hybrid contribution 0.013 -0.818 -0.813 1.153 sum -8.063 25.486 -11.319 29.029 Atomic orbital electron populations 1.21891 0.94403 1.02174 1.01437 1.20511 0.95891 0.95181 0.95112 1.21874 1.01014 0.95301 1.01710 1.21969 1.01115 1.00659 0.96648 1.21309 1.00719 0.91898 0.97871 1.22648 1.00971 0.94668 0.95163 0.85902 1.23183 0.90762 1.02880 1.01365 1.21849 1.01478 0.89375 1.05919 0.84821 1.22532 0.73312 0.88030 0.83052 1.90637 1.48134 1.79088 1.22502 1.86491 1.76485 1.21999 1.41823 1.23503 1.01345 0.75986 0.99898 1.21556 1.01310 0.95701 0.95331 1.19522 0.96781 0.90786 0.97724 1.21055 1.44491 0.93506 0.96877 0.90790 1.25019 0.94491 0.97339 0.96606 1.69909 1.45837 1.07863 1.30402 0.86779 0.79170 0.78706 0.84658 1.20205 1.21271 1.18988 0.92739 0.92942 0.92162 0.92637 0.92639 0.92682 0.92012 0.92795 0.92605 0.91280 0.91088 0.88125 0.87303 0.91581 0.91552 0.91528 0.91510 0.96291 0.96721 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.23 37.16 0.31 -0.59 16 2 C -0.07 -0.44 0.80 -154.51 -0.12 -0.56 16 3 C -0.14 -0.81 8.47 37.16 0.31 -0.50 16 4 C -0.15 -1.07 8.23 37.16 0.31 -0.77 16 5 C -0.08 -0.56 4.55 -26.73 -0.12 -0.69 16 6 C -0.12 -1.04 3.77 -90.62 -0.34 -1.38 16 7 H 0.12 1.28 5.59 -51.93 -0.29 0.99 16 8 C -0.14 -1.24 9.88 -26.73 -0.26 -1.50 16 9 C -0.17 -1.79 6.02 -91.77 -0.55 -2.35 16 10 H 0.13 1.22 8.14 -51.93 -0.42 0.80 16 11 C 0.49 7.39 7.74 36.01 0.28 7.67 16 12 O -0.51 -9.03 16.01 -18.75 -0.30 -9.33 16 13 O -0.35 -5.90 10.22 -39.26 -0.40 -6.30 16 14 C 0.07 1.18 5.47 37.16 0.20 1.38 16 15 C -0.10 -2.06 5.53 -26.74 -0.15 -2.20 16 16 C -0.01 -0.26 4.04 -27.89 -0.11 -0.37 16 17 C -0.52 -14.95 9.66 -34.44 -0.33 -15.28 16 18 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 19 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 20 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 21 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.42 7.20 -51.93 -0.37 0.05 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.51 6.14 -51.93 -0.32 0.19 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.42 7.87 -51.93 -0.41 0.01 16 35 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.11 0.70 8.03 -51.93 -0.42 0.28 16 38 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 39 H 0.07 1.18 8.13 -51.93 -0.42 0.75 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 43 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 44 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 LS Contribution 356.15 15.07 5.37 5.37 Total: -1.00 -31.65 356.15 -7.99 -39.65 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -8.08 Total: -4.17 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -0.69 Total: -15.27 kcal Atomic # 7 Polarization: -27.88 SS G_CDS: 0.77 Total: -27.10 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.70 Total: -15.63 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.65 -7.99 -39.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830259106.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.613 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds