Wall clock time and date at job start Mon Mar 30 2020 00:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47053 * 2 1 4 4 C 1.52996 * 109.47145 * 239.99792 * 2 1 3 5 5 C 1.53006 * 109.46954 * 119.99589 * 2 1 3 6 6 C 1.53000 * 109.46905 * 60.00320 * 5 2 1 7 7 H 1.09005 * 115.56412 * 29.30619 * 6 5 2 8 8 C 1.52999 * 117.49925 * 243.62051 * 6 5 2 9 9 C 1.52998 * 60.00119 * 252.50840 * 8 6 5 10 10 H 1.09002 * 117.50248 * 107.51059 * 9 8 6 11 11 C 1.50706 * 117.50140 * 252.51076 * 9 8 6 12 12 O 1.20824 * 120.00104 * 68.60362 * 11 9 8 13 13 O 1.34230 * 119.99717 * 248.60918 * 11 9 8 14 14 C 1.45199 * 116.99614 * 179.97438 * 13 11 9 15 15 C 1.52997 * 109.47075 * 179.97438 * 14 13 11 16 16 C 1.52992 * 109.47482 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47592 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00057 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00356 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00113 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99923 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47375 * 89.99678 * 21 19 17 23 23 H 1.48508 * 109.47196 * 209.99673 * 21 19 17 24 24 H 1.48504 * 109.47051 * 329.99297 * 21 19 17 25 25 H 1.08996 * 109.46965 * 300.00046 * 1 2 3 26 26 H 1.08996 * 109.47012 * 60.00349 * 1 2 3 27 27 H 1.09000 * 109.46923 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46767 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.46926 * 299.99703 * 3 2 1 30 30 H 1.09006 * 109.47121 * 60.00180 * 3 2 1 31 31 H 1.09000 * 109.47113 * 299.99764 * 4 2 1 32 32 H 1.08996 * 109.47281 * 60.00024 * 4 2 1 33 33 H 1.09003 * 109.46994 * 180.02562 * 4 2 1 34 34 H 1.08995 * 109.47405 * 300.00505 * 5 2 1 35 35 H 1.09007 * 109.47033 * 179.97438 * 5 2 1 36 36 H 1.08997 * 117.50283 * 145.02032 * 8 6 5 37 37 H 1.08999 * 117.50137 * 359.97438 * 8 6 5 38 38 H 1.09002 * 109.47177 * 299.99820 * 14 13 11 39 39 H 1.09001 * 109.47399 * 59.99991 * 14 13 11 40 40 H 1.09002 * 109.47153 * 300.00058 * 15 14 13 41 41 H 1.08998 * 109.47533 * 59.99688 * 15 14 13 42 42 H 1.09002 * 109.47103 * 300.00247 * 16 15 14 43 43 H 1.09001 * 109.47066 * 60.00169 * 16 15 14 44 44 H 0.97008 * 120.00167 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2494 6 6 1.5300 -2.1637 1.2494 7 1 1.3621 -2.6032 0.2661 8 6 0.5860 -2.5793 2.3794 9 6 2.0284 -3.0892 2.3611 10 1 2.7196 -2.6708 3.0927 11 6 2.2497 -4.5387 2.0128 12 8 2.0337 -4.9301 0.8903 13 8 2.6865 -5.3949 2.9498 14 6 2.8767 -6.7759 2.5435 15 6 3.3747 -7.5944 3.7363 16 6 3.5745 -9.0496 3.3084 17 6 4.0656 -9.8558 4.4831 18 1 4.2194 -9.3781 5.4395 19 6 4.3176 -11.2035 4.3374 20 7 4.7467 -11.9069 5.3624 21 14 4.0510 -12.0300 2.6836 22 1 5.3037 -11.9630 1.8889 23 1 3.6745 -13.4509 2.8952 24 1 2.9627 -11.3333 1.9518 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2491 32 1 1.6767 -0.2075 -2.1392 33 1 3.1301 -0.7217 -1.2489 34 1 1.6766 -0.2074 2.1393 35 1 3.1301 -0.7216 1.2491 36 1 -0.2029 -3.2921 2.1397 37 1 0.3286 -1.8251 3.1231 38 1 1.9295 -7.1849 2.1918 39 1 3.6123 -6.8203 1.7404 40 1 4.3219 -7.1853 4.0877 41 1 2.6395 -7.5501 4.5398 42 1 2.6271 -9.4585 2.9574 43 1 4.3096 -9.0944 2.5049 44 1 4.9237 -12.8551 5.2600 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830259106.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:46 Heat of formation + Delta-G solvation = -117.099097 kcal Electronic energy + Delta-G solvation = -19994.772080 eV Core-core repulsion = 16911.105034 eV Total energy + Delta-G solvation = -3083.667045 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.71343 -39.62284 -37.92570 -36.53596 -35.95460 -33.88777 -29.75250 -28.64768 -28.12530 -28.04681 -26.12098 -24.32959 -22.32800 -22.10138 -21.09944 -19.69121 -19.03375 -18.63810 -17.72544 -17.55472 -16.33204 -15.90772 -15.66021 -15.51180 -15.40438 -14.84008 -14.71463 -14.26090 -14.01461 -13.90616 -13.76525 -13.22854 -13.11966 -12.87803 -12.64892 -12.57882 -12.56328 -12.38368 -12.15251 -12.04915 -11.92625 -11.78180 -11.63583 -11.48251 -11.43234 -11.38764 -11.32236 -11.08871 -10.90537 -10.79331 -8.31847 -6.36998 1.01728 1.35477 1.36920 1.48768 1.58430 2.34137 2.74295 3.03024 3.50810 3.60307 3.74510 3.94758 3.96693 3.99381 4.05061 4.07809 4.22352 4.33932 4.42771 4.65683 4.70186 4.71446 4.76077 4.78906 4.85804 4.90487 4.93115 4.98977 5.00109 5.01826 5.14340 5.17752 5.28725 5.29457 5.33978 5.45534 5.47422 5.48813 5.56250 5.58494 5.60463 6.23857 6.66827 6.71527 7.27414 8.84634 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.047196 B = 0.002618 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.125826 B =10693.797336 C =10926.840388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.066 4.066 3 C -0.140 4.140 4 C -0.148 4.148 5 C -0.077 4.077 6 C -0.108 4.108 7 H 0.105 0.895 8 C -0.130 4.130 9 C -0.182 4.182 10 H 0.153 0.847 11 C 0.483 3.517 12 O -0.543 6.543 13 O -0.358 6.358 14 C 0.074 3.926 15 C -0.092 4.092 16 C -0.009 4.009 17 C -0.534 4.534 18 H 0.036 0.964 19 C 0.005 3.995 20 N -0.948 5.948 21 Si 0.950 3.050 22 H -0.266 1.266 23 H -0.282 1.282 24 H -0.247 1.247 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.138 0.862 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.025 0.975 43 H 0.024 0.976 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.953 28.436 -11.506 31.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.066 4.066 3 C -0.197 4.197 4 C -0.205 4.205 5 C -0.114 4.114 6 C -0.126 4.126 7 H 0.123 0.877 8 C -0.167 4.167 9 C -0.200 4.200 10 H 0.171 0.829 11 C 0.329 3.671 12 O -0.434 6.434 13 O -0.274 6.274 14 C 0.001 3.999 15 C -0.130 4.130 16 C -0.047 4.047 17 C -0.572 4.572 18 H 0.054 0.946 19 C -0.192 4.192 20 N -0.589 5.589 21 Si 0.773 3.227 22 H -0.191 1.191 23 H -0.208 1.208 24 H -0.171 1.171 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.156 0.844 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.044 0.956 43 H 0.042 0.958 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.954 28.114 -11.767 31.765 hybrid contribution 0.285 -1.315 -0.361 1.393 sum -8.669 26.799 -12.128 30.666 Atomic orbital electron populations 1.21881 0.94135 1.01738 1.02046 1.20509 0.96082 0.95603 0.94396 1.21850 1.01001 0.94566 1.02259 1.21977 1.00903 1.00039 0.97565 1.21329 1.00705 0.90555 0.98793 1.22660 1.00646 0.95205 0.94109 0.87719 1.23346 0.89130 1.02694 1.01499 1.22014 1.03680 0.86567 1.07780 0.82950 1.23420 0.72071 0.89257 0.82357 1.90622 1.49423 1.79791 1.23552 1.86487 1.76921 1.21466 1.42533 1.23186 1.01449 0.76854 0.98455 1.21317 1.01271 0.94170 0.96193 1.19448 0.96880 0.92327 0.96002 1.21388 1.44480 0.94282 0.97089 0.94609 1.26009 0.94135 0.98134 1.00953 1.70058 1.47310 1.08440 1.33071 0.85656 0.79965 0.77594 0.79443 1.19059 1.20771 1.17053 0.91769 0.92748 0.93086 0.92670 0.92422 0.91837 0.93434 0.92328 0.92919 0.89521 0.91128 0.88895 0.84370 0.91287 0.91248 0.91836 0.91841 0.95647 0.95775 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.23 71.98 0.59 -0.92 16 2 C -0.07 -0.74 0.80 -52.18 -0.04 -0.78 16 3 C -0.14 -1.28 8.47 71.98 0.61 -0.67 16 4 C -0.15 -2.04 8.23 71.98 0.59 -1.45 16 5 C -0.08 -0.89 4.55 30.60 0.14 -0.75 16 6 C -0.11 -1.75 3.77 -10.79 -0.04 -1.79 16 7 H 0.10 2.14 5.59 -2.38 -0.01 2.13 16 8 C -0.13 -1.91 9.88 30.59 0.30 -1.61 16 9 C -0.18 -3.57 6.02 -11.54 -0.07 -3.64 16 10 H 0.15 2.41 8.14 -2.39 -0.02 2.39 16 11 C 0.48 14.24 7.74 71.24 0.55 14.79 16 12 O -0.54 -18.85 16.01 21.97 0.35 -18.50 16 13 O -0.36 -11.66 10.22 -51.42 -0.53 -12.19 16 14 C 0.07 2.59 5.47 71.98 0.39 2.98 16 15 C -0.09 -3.69 5.53 30.59 0.17 -3.52 16 16 C -0.01 -0.43 4.04 29.84 0.12 -0.31 16 17 C -0.53 -31.13 9.66 25.60 0.25 -30.89 16 18 H 0.04 2.28 7.99 -2.91 -0.02 2.26 16 19 C 0.00 0.28 5.47 84.65 0.46 0.74 16 20 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 21 Si 0.95 44.49 27.47 68.60 1.88 46.38 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.05 0.64 7.20 -2.39 -0.02 0.62 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.05 0.79 6.14 -2.39 -0.01 0.77 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.09 0.73 7.87 -2.39 -0.02 0.71 16 35 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.14 1.24 8.03 -2.39 -0.02 1.22 16 38 H 0.07 2.37 8.13 -2.39 -0.02 2.35 16 39 H 0.07 2.38 8.13 -2.39 -0.02 2.36 16 40 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.03 1.16 7.20 -2.39 -0.02 1.15 16 43 H 0.02 1.09 7.57 -2.39 -0.02 1.07 16 44 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 Total: -1.00 -68.74 356.15 6.92 -61.82 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.88 Total: 9.81 kcal Atomic # 6 Polarization: -31.84 SS G_CDS: 4.03 Total: -27.81 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: 0.30 Total: -59.51 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.17 Total: -30.69 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.38 kcal Total: -68.74 6.92 -61.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830259106.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.279 kcal (2) G-P(sol) polarization free energy of solvation -68.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds