Wall clock time and date at job start Mon Mar 30 2020 00:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47064 * 2 1 4 4 C 1.53000 * 109.47172 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.01661 * 55.85630 * 4 3 2 6 6 C 1.54258 * 110.03513 * 294.45864 * 4 3 2 7 7 C 1.54894 * 104.19763 * 217.10406 * 6 4 3 8 8 C 1.54891 * 102.74759 * 37.94461 * 7 6 4 9 9 C 1.53881 * 110.03259 * 177.23940 * 4 3 2 10 10 H 1.08994 * 110.03481 * 238.57371 * 9 4 3 11 11 C 1.50704 * 110.03062 * 0.02562 * 9 4 3 12 12 O 1.20822 * 119.99854 * 86.93301 * 11 9 4 13 13 O 1.34223 * 120.00184 * 266.93304 * 11 9 4 14 14 C 1.45205 * 117.00246 * 180.02562 * 13 11 9 15 15 C 1.52998 * 109.47017 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.47104 * 179.97438 * 15 14 13 17 17 C 1.50693 * 109.47099 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00288 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99551 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00264 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99846 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47126 * 90.00131 * 21 19 17 23 23 H 1.48498 * 109.47185 * 210.00227 * 21 19 17 24 24 H 1.48503 * 109.46939 * 330.00301 * 21 19 17 25 25 H 1.09002 * 109.47156 * 299.99884 * 1 2 3 26 26 H 1.08996 * 109.46665 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46948 * 60.00244 * 1 2 3 28 28 H 1.08999 * 109.47254 * 120.00138 * 2 1 3 29 29 H 1.09002 * 109.47156 * 240.00116 * 2 1 3 30 30 H 1.08999 * 109.47198 * 300.00172 * 3 2 1 31 31 H 1.09002 * 109.47039 * 60.00045 * 3 2 1 32 32 H 1.08998 * 110.48679 * 335.78625 * 6 4 3 33 33 H 1.09009 * 110.48618 * 98.42788 * 6 4 3 34 34 H 1.09000 * 110.75601 * 156.25783 * 7 6 4 35 35 H 1.09005 * 110.75519 * 279.44463 * 7 6 4 36 36 H 1.09000 * 110.48714 * 80.73207 * 8 7 6 37 37 H 1.08995 * 110.48474 * 203.24749 * 8 7 6 38 38 H 1.08998 * 109.46141 * 299.99415 * 14 13 11 39 39 H 1.08992 * 109.47161 * 59.99538 * 14 13 11 40 40 H 1.08998 * 109.47180 * 299.99816 * 15 14 13 41 41 H 1.09006 * 109.47399 * 59.99676 * 15 14 13 42 42 H 1.09004 * 109.46546 * 300.00199 * 16 15 14 43 43 H 1.08998 * 109.47026 * 59.99440 * 16 15 14 44 44 H 0.97000 * 120.00045 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9435 0.8676 -0.8467 6 6 4.0980 0.8427 1.3201 7 6 5.3531 1.6895 1.6470 8 6 4.9270 3.1139 1.2128 9 6 4.0971 2.8865 -0.0690 10 1 4.7270 3.0121 -0.9496 11 6 2.9438 3.8554 -0.1157 12 8 2.4454 4.2513 0.9113 13 8 2.4701 4.2785 -1.2982 14 6 1.3581 5.2117 -1.2672 15 6 0.9596 5.5779 -2.6982 16 6 -0.2125 6.5608 -2.6656 17 6 -0.6046 6.9219 -4.0751 18 1 -0.0715 6.4931 -4.9106 19 6 -1.6448 7.7991 -4.2980 20 7 -2.2944 8.3210 -3.2805 21 14 -2.1304 8.2474 -6.0452 22 1 -3.1584 7.2935 -6.5335 23 1 -2.6836 9.6254 -6.0671 24 1 -0.9352 8.1798 -6.9240 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 -1.0276 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.3535 0.9435 2.1098 33 1 4.3693 -0.2040 1.1818 34 1 5.5715 1.6602 2.7145 35 1 6.2114 1.3469 1.0690 36 1 4.3163 3.5815 1.9851 37 1 5.8033 3.7254 0.9983 38 1 0.5106 4.7501 -0.7605 39 1 1.6550 6.1131 -0.7311 40 1 1.8073 6.0395 -3.2046 41 1 0.6628 4.6766 -3.2347 42 1 -1.0601 6.0987 -2.1593 43 1 0.0838 7.4620 -2.1290 44 1 -3.0259 8.9384 -3.4373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835160297.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:05 Heat of formation + Delta-G solvation = -139.476953 kcal Electronic energy + Delta-G solvation = -20854.191291 eV Core-core repulsion = 17769.553869 eV Total energy + Delta-G solvation = -3084.637422 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.78591 -38.33610 -36.22437 -34.56632 -33.96939 -31.72809 -30.14872 -29.52545 -27.02195 -25.31819 -23.58709 -21.97801 -21.89659 -20.65314 -20.35162 -19.11846 -17.39054 -16.52895 -16.39908 -15.92145 -15.80102 -15.10233 -14.55080 -14.44957 -14.07535 -13.77671 -13.22969 -13.05540 -12.68897 -12.28604 -12.14545 -12.04310 -11.89712 -11.85393 -11.48924 -11.30381 -11.05916 -10.96807 -10.94140 -10.86000 -10.65209 -10.62879 -10.59220 -10.54212 -10.29979 -10.13277 -9.70262 -9.47454 -9.15608 -8.38438 -6.03146 -4.06175 2.40851 2.95690 3.31166 3.37309 3.40964 4.21953 4.30209 4.43120 4.49122 4.84021 4.91597 5.03762 5.10886 5.22297 5.24677 5.30093 5.32761 5.33703 5.38657 5.49466 5.60021 5.63884 5.65960 5.72959 5.73507 5.74729 5.88327 5.93066 5.97158 6.03014 6.09702 6.14068 6.21160 6.26660 6.55466 6.56424 6.88945 7.00609 7.60853 7.72009 7.95116 8.02570 8.36668 9.00129 9.58078 11.08305 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.025323 B = 0.003518 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.446930 B = 7956.850684 C = 8573.507956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.134 4.134 4 C -0.076 4.076 5 H 0.085 0.915 6 C -0.118 4.118 7 C -0.122 4.122 8 C -0.117 4.117 9 C -0.087 4.087 10 H 0.102 0.898 11 C 0.468 3.532 12 O -0.513 6.513 13 O -0.359 6.359 14 C 0.068 3.932 15 C -0.109 4.109 16 C 0.024 3.976 17 C -0.521 4.521 18 H 0.057 0.943 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.930 -16.708 8.859 23.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.171 4.171 4 C -0.094 4.094 5 H 0.103 0.897 6 C -0.156 4.156 7 C -0.160 4.160 8 C -0.155 4.155 9 C -0.106 4.106 10 H 0.121 0.879 11 C 0.312 3.688 12 O -0.402 6.402 13 O -0.275 6.275 14 C -0.005 4.005 15 C -0.146 4.146 16 C -0.013 4.013 17 C -0.560 4.560 18 H 0.076 0.924 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.595 -16.431 9.181 23.218 hybrid contribution -0.523 0.508 -0.905 1.162 sum 13.072 -15.923 8.276 22.202 Atomic orbital electron populations 1.21791 0.95779 1.01416 1.02289 1.21478 0.96007 0.96288 1.01769 1.22018 0.94071 0.97812 1.03211 1.21729 0.95910 0.92675 0.99117 0.89698 1.22473 0.97356 0.98998 0.96749 1.22475 0.97714 0.94555 1.01245 1.22461 0.99141 0.97872 0.95979 1.21816 0.93780 0.93408 1.01619 0.87945 1.23389 0.83834 0.79607 0.82015 1.90625 1.58683 1.55647 1.35224 1.86526 1.49073 1.58642 1.33288 1.23466 0.85553 0.90362 1.01152 1.21755 1.00594 1.00818 0.91453 1.19050 0.91361 0.93215 0.97690 1.21173 1.16136 1.26428 0.92216 0.92439 1.25032 0.96290 0.96021 0.97126 1.69966 1.22195 1.31033 1.30173 0.86550 0.78773 0.77698 0.84730 1.20612 1.21188 1.19797 0.92739 0.92874 0.92422 0.92031 0.92070 0.91139 0.91004 0.91065 0.91293 0.91163 0.91273 0.89504 0.91002 0.91669 0.91659 0.92198 0.92218 0.96275 0.96264 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.91 37.16 0.37 -1.21 16 2 C -0.12 -1.13 5.77 -26.73 -0.15 -1.28 16 3 C -0.13 -1.54 3.39 -26.73 -0.09 -1.63 16 4 C -0.08 -0.74 2.95 -89.50 -0.26 -1.00 16 5 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 6 C -0.12 -0.97 5.42 -25.07 -0.14 -1.10 16 7 C -0.12 -0.93 6.91 -24.73 -0.17 -1.11 16 8 C -0.12 -1.15 6.31 -25.01 -0.16 -1.31 16 9 C -0.09 -0.97 3.41 -90.59 -0.31 -1.28 16 10 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 11 C 0.47 7.20 4.80 36.01 0.17 7.37 16 12 O -0.51 -9.16 14.72 -18.75 -0.28 -9.43 16 13 O -0.36 -6.13 9.77 -39.24 -0.38 -6.51 16 14 C 0.07 1.28 5.47 37.16 0.20 1.49 16 15 C -0.11 -2.30 5.53 -26.73 -0.15 -2.44 16 16 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 17 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 21 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.52 7.43 -51.93 -0.39 0.14 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.95 7.02 -51.93 -0.36 0.58 16 31 H 0.07 0.96 7.04 -51.93 -0.37 0.59 16 32 H 0.07 0.64 7.80 -51.93 -0.40 0.24 16 33 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 1.02 6.88 -51.93 -0.36 0.67 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 39 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 350.51 15.07 5.28 5.28 Total: -1.00 -30.91 350.51 -9.08 -39.99 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -8.18 Total: -3.12 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -1.24 Total: -16.60 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.74 Total: -26.25 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.66 Total: -15.94 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.91 -9.08 -39.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835160297.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.488 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds