Wall clock time and date at job start Mon Mar 30 2020 00:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47064 * 2 1 4 4 C 1.53000 * 109.47172 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.01661 * 55.85630 * 4 3 2 6 6 C 1.54258 * 110.03513 * 294.45864 * 4 3 2 7 7 C 1.54894 * 104.19763 * 217.10406 * 6 4 3 8 8 C 1.54891 * 102.74759 * 37.94461 * 7 6 4 9 9 C 1.53881 * 110.03259 * 177.23940 * 4 3 2 10 10 H 1.08994 * 110.03481 * 238.57371 * 9 4 3 11 11 C 1.50704 * 110.03062 * 0.02562 * 9 4 3 12 12 O 1.20822 * 119.99854 * 86.93301 * 11 9 4 13 13 O 1.34223 * 120.00184 * 266.93304 * 11 9 4 14 14 C 1.45205 * 117.00246 * 180.02562 * 13 11 9 15 15 C 1.52998 * 109.47017 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.47104 * 179.97438 * 15 14 13 17 17 C 1.50693 * 109.47099 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00288 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99551 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00264 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99846 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47126 * 90.00131 * 21 19 17 23 23 H 1.48498 * 109.47185 * 210.00227 * 21 19 17 24 24 H 1.48503 * 109.46939 * 330.00301 * 21 19 17 25 25 H 1.09002 * 109.47156 * 299.99884 * 1 2 3 26 26 H 1.08996 * 109.46665 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46948 * 60.00244 * 1 2 3 28 28 H 1.08999 * 109.47254 * 120.00138 * 2 1 3 29 29 H 1.09002 * 109.47156 * 240.00116 * 2 1 3 30 30 H 1.08999 * 109.47198 * 300.00172 * 3 2 1 31 31 H 1.09002 * 109.47039 * 60.00045 * 3 2 1 32 32 H 1.08998 * 110.48679 * 335.78625 * 6 4 3 33 33 H 1.09009 * 110.48618 * 98.42788 * 6 4 3 34 34 H 1.09000 * 110.75601 * 156.25783 * 7 6 4 35 35 H 1.09005 * 110.75519 * 279.44463 * 7 6 4 36 36 H 1.09000 * 110.48714 * 80.73207 * 8 7 6 37 37 H 1.08995 * 110.48474 * 203.24749 * 8 7 6 38 38 H 1.08998 * 109.46141 * 299.99415 * 14 13 11 39 39 H 1.08992 * 109.47161 * 59.99538 * 14 13 11 40 40 H 1.08998 * 109.47180 * 299.99816 * 15 14 13 41 41 H 1.09006 * 109.47399 * 59.99676 * 15 14 13 42 42 H 1.09004 * 109.46546 * 300.00199 * 16 15 14 43 43 H 1.08998 * 109.47026 * 59.99440 * 16 15 14 44 44 H 0.97000 * 120.00045 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9435 0.8676 -0.8467 6 6 4.0980 0.8427 1.3201 7 6 5.3531 1.6895 1.6470 8 6 4.9270 3.1139 1.2128 9 6 4.0971 2.8865 -0.0690 10 1 4.7270 3.0121 -0.9496 11 6 2.9438 3.8554 -0.1157 12 8 2.4454 4.2513 0.9113 13 8 2.4701 4.2785 -1.2982 14 6 1.3581 5.2117 -1.2672 15 6 0.9596 5.5779 -2.6982 16 6 -0.2125 6.5608 -2.6656 17 6 -0.6046 6.9219 -4.0751 18 1 -0.0715 6.4931 -4.9106 19 6 -1.6448 7.7991 -4.2980 20 7 -2.2944 8.3210 -3.2805 21 14 -2.1304 8.2474 -6.0452 22 1 -3.1584 7.2935 -6.5335 23 1 -2.6836 9.6254 -6.0671 24 1 -0.9352 8.1798 -6.9240 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 -1.0276 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.3535 0.9435 2.1098 33 1 4.3693 -0.2040 1.1818 34 1 5.5715 1.6602 2.7145 35 1 6.2114 1.3469 1.0690 36 1 4.3163 3.5815 1.9851 37 1 5.8033 3.7254 0.9983 38 1 0.5106 4.7501 -0.7605 39 1 1.6550 6.1131 -0.7311 40 1 1.8073 6.0395 -3.2046 41 1 0.6628 4.6766 -3.2347 42 1 -1.0601 6.0987 -2.1593 43 1 0.0838 7.4620 -2.1290 44 1 -3.0259 8.9384 -3.4373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835160297.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:04 Heat of formation + Delta-G solvation = -154.292813 kcal Electronic energy + Delta-G solvation = -20854.833755 eV Core-core repulsion = 17769.553869 eV Total energy + Delta-G solvation = -3085.279886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.97485 -39.34456 -37.60561 -35.95783 -35.37119 -33.71994 -31.01232 -30.38453 -28.89107 -26.20028 -25.35328 -23.27709 -22.68039 -22.19856 -21.38581 -20.21918 -18.77948 -18.36084 -17.71289 -17.24595 -16.76521 -16.50219 -15.93890 -15.56572 -15.46981 -14.60007 -14.56376 -14.12995 -14.09119 -13.84074 -13.73977 -13.40201 -12.98297 -12.83901 -12.78917 -12.52126 -12.43272 -12.32432 -12.09052 -11.98191 -11.88283 -11.78749 -11.66297 -11.50209 -11.47912 -11.43005 -11.32048 -11.28374 -11.10319 -10.59340 -8.23436 -6.35466 1.16931 1.40346 1.42180 1.53338 1.67849 2.40256 3.10303 3.38090 3.52328 3.63621 3.89148 3.94786 4.03083 4.07072 4.23897 4.27757 4.37321 4.42033 4.46935 4.55710 4.58180 4.65924 4.71342 4.75542 4.84537 4.88511 4.94604 4.99246 5.04271 5.04631 5.15914 5.22022 5.22949 5.27575 5.38151 5.40489 5.42788 5.48861 5.56882 5.59967 5.77429 6.16792 6.72351 6.80513 7.34223 8.88894 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.025323 B = 0.003518 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.446930 B = 7956.850684 C = 8573.507956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.112 4.112 3 C -0.132 4.132 4 C -0.073 4.073 5 H 0.108 0.892 6 C -0.116 4.116 7 C -0.114 4.114 8 C -0.119 4.119 9 C -0.086 4.086 10 H 0.123 0.877 11 C 0.465 3.535 12 O -0.543 6.543 13 O -0.359 6.359 14 C 0.078 3.922 15 C -0.093 4.093 16 C 0.026 3.974 17 C -0.544 4.544 18 H 0.066 0.934 19 C -0.001 4.001 20 N -0.934 5.934 21 Si 0.970 3.030 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.261 1.261 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.066 0.934 42 H -0.005 1.005 43 H -0.004 1.004 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.859 -18.593 7.696 25.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.150 4.150 3 C -0.170 4.170 4 C -0.092 4.092 5 H 0.127 0.873 6 C -0.153 4.153 7 C -0.151 4.151 8 C -0.156 4.156 9 C -0.105 4.105 10 H 0.141 0.859 11 C 0.310 3.690 12 O -0.433 6.433 13 O -0.276 6.276 14 C 0.005 3.995 15 C -0.130 4.130 16 C -0.011 4.011 17 C -0.582 4.582 18 H 0.084 0.916 19 C -0.199 4.199 20 N -0.574 5.574 21 Si 0.794 3.206 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.185 1.185 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.013 0.987 43 H 0.014 0.986 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.545 -18.333 8.021 25.339 hybrid contribution -1.133 1.092 -0.466 1.641 sum 14.412 -17.241 7.555 23.707 Atomic orbital electron populations 1.21823 0.96619 1.02120 1.01020 1.21464 0.95270 0.95027 1.03205 1.21963 0.95771 0.98662 1.00582 1.21828 0.94289 0.91932 1.01135 0.87334 1.22476 0.97211 1.00395 0.95218 1.22479 0.98022 0.92454 1.02166 1.22500 0.98913 0.99737 0.94480 1.22097 0.92191 0.92889 1.03296 0.85877 1.24402 0.84269 0.79425 0.80870 1.90615 1.59857 1.56817 1.36029 1.86522 1.48256 1.58226 1.34585 1.23062 0.86265 0.90678 0.99521 1.21448 0.98877 0.99779 0.92908 1.18931 0.92391 0.93274 0.96494 1.21612 1.16575 1.26743 0.93250 0.91629 1.26033 0.96162 0.95792 1.01947 1.70104 1.22795 1.31691 1.32805 0.85369 0.78813 0.77465 0.78939 1.19661 1.20754 1.18467 0.93827 0.91144 0.93933 0.90421 0.90593 0.93657 0.93769 0.92446 0.88846 0.90328 0.89067 0.92151 0.89598 0.92497 0.92270 0.91441 0.91560 0.98669 0.98587 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 9.91 71.98 0.71 -2.46 16 2 C -0.11 -1.99 5.77 30.59 0.18 -1.81 16 3 C -0.13 -3.01 3.39 30.59 0.10 -2.91 16 4 C -0.07 -1.27 2.95 -10.07 -0.03 -1.30 16 5 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 6 C -0.12 -1.57 5.42 31.67 0.17 -1.40 16 7 C -0.11 -1.38 6.91 31.89 0.22 -1.16 16 8 C -0.12 -2.14 6.31 31.71 0.20 -1.94 16 9 C -0.09 -1.78 3.41 -10.77 -0.04 -1.82 16 10 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 11 C 0.47 14.46 4.80 71.24 0.34 14.80 16 12 O -0.54 -20.18 14.72 21.98 0.32 -19.86 16 13 O -0.36 -12.37 9.77 -51.35 -0.50 -12.88 16 14 C 0.08 3.08 5.47 71.98 0.39 3.47 16 15 C -0.09 -3.98 5.53 30.59 0.17 -3.81 16 16 C 0.03 1.42 4.97 29.85 0.15 1.57 16 17 C -0.54 -31.24 9.11 25.60 0.23 -31.01 16 18 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 19 C 0.00 -0.09 5.46 84.66 0.46 0.38 16 20 N -0.93 -57.49 13.29 21.45 0.28 -57.21 16 21 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 24 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 25 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 1.14 7.43 -2.39 -0.02 1.12 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.04 1.24 7.02 -2.39 -0.02 1.22 16 31 H 0.04 1.23 7.04 -2.39 -0.02 1.22 16 32 H 0.06 0.95 7.80 -2.39 -0.02 0.93 16 33 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.06 1.42 6.88 -2.39 -0.02 1.41 16 37 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.06 2.30 8.13 -2.39 -0.02 2.28 16 39 H 0.06 2.37 8.13 -2.39 -0.02 2.35 16 40 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 41 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 42 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 43 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 44 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -68.30 350.51 6.33 -61.97 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.93 Total: 11.01 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: 3.27 Total: -29.41 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.28 Total: -57.21 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.18 Total: -32.73 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -68.30 6.33 -61.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835160297.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.324 kcal (2) G-P(sol) polarization free energy of solvation -68.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds