Wall clock time and date at job start Mon Mar 30 2020 00:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47073 * 2 1 4 4 C 1.53001 * 109.47159 * 180.02562 * 3 2 1 5 5 H 1.09005 * 110.05669 * 306.74173 * 4 3 2 6 6 C 1.54267 * 110.03461 * 68.15518 * 4 3 2 7 7 C 1.54889 * 104.19580 * 142.89396 * 6 4 3 8 8 C 1.54887 * 102.75105 * 322.06471 * 7 6 4 9 9 C 1.53876 * 110.03559 * 185.32617 * 4 3 2 10 10 H 1.09000 * 110.07460 * 121.40283 * 9 4 3 11 11 C 1.50701 * 110.02736 * 359.97438 * 9 4 3 12 12 O 1.20824 * 120.00223 * 275.04101 * 11 9 4 13 13 O 1.34236 * 119.99850 * 95.04199 * 11 9 4 14 14 C 1.45198 * 116.99871 * 179.97438 * 13 11 9 15 15 C 1.53003 * 109.46881 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47197 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47322 * 179.97438 * 16 15 14 18 18 H 1.07994 * 119.99743 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00054 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99933 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00075 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47328 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.47301 * 300.00738 * 21 19 17 24 24 H 1.48506 * 109.47217 * 60.00247 * 21 19 17 25 25 H 1.09004 * 109.46481 * 300.00128 * 1 2 3 26 26 H 1.08994 * 109.47403 * 59.99955 * 1 2 3 27 27 H 1.08997 * 109.46797 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46997 * 240.00351 * 2 1 3 29 29 H 1.08994 * 109.47403 * 120.00045 * 2 1 3 30 30 H 1.08992 * 109.47179 * 60.00013 * 3 2 1 31 31 H 1.09003 * 109.47004 * 300.00017 * 3 2 1 32 32 H 1.08998 * 110.48574 * 24.22163 * 6 4 3 33 33 H 1.08995 * 110.59951 * 261.62963 * 6 4 3 34 34 H 1.08998 * 110.75832 * 203.74720 * 7 6 4 35 35 H 1.09005 * 110.91023 * 80.44707 * 7 6 4 36 36 H 1.09010 * 110.48086 * 279.26300 * 8 7 6 37 37 H 1.08996 * 110.60345 * 156.67410 * 8 7 6 38 38 H 1.08992 * 109.47339 * 60.00336 * 14 13 11 39 39 H 1.09006 * 109.47125 * 299.99780 * 14 13 11 40 40 H 1.08999 * 109.47702 * 60.00131 * 15 14 13 41 41 H 1.09002 * 109.46865 * 300.00203 * 15 14 13 42 42 H 1.09004 * 109.47549 * 59.99507 * 16 15 14 43 43 H 1.09002 * 109.47186 * 299.99771 * 16 15 14 44 44 H 0.97003 * 120.00265 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9442 0.8299 0.8196 6 6 4.0979 0.9035 -1.3462 7 6 5.3530 1.7643 -1.6341 8 6 4.9271 3.1673 -1.1352 9 6 4.0972 2.8819 0.1335 10 1 4.7269 2.9687 1.0190 11 6 2.9439 3.8477 0.2236 12 8 2.4223 4.2616 -0.7847 13 8 2.4960 4.2482 1.4240 14 6 1.3824 5.1798 1.4347 15 6 1.0152 5.5190 2.8808 16 6 -0.1587 6.5001 2.8923 17 6 -0.5208 6.8337 4.3166 18 1 0.0309 6.3899 5.1321 19 6 -1.5564 7.7055 4.5786 20 7 -2.2285 8.2455 3.5855 21 14 -2.0056 8.1184 6.3441 22 1 -3.1449 9.0708 6.3552 23 1 -2.3925 6.8761 7.0600 24 1 -0.8369 8.7360 7.0208 25 1 -0.3632 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.3535 1.0404 -2.1305 33 1 4.3689 -0.1486 -1.2581 34 1 5.5714 1.7838 -2.7018 35 1 6.2126 1.3990 -1.0720 36 1 4.3164 3.6698 -1.8854 37 1 5.8021 3.7696 -0.8911 38 1 0.5244 4.7263 0.9385 39 1 1.6662 6.0915 0.9090 40 1 1.8732 5.9727 3.3768 41 1 0.7315 4.6074 3.4070 42 1 -1.0167 6.0461 2.3964 43 1 0.1246 7.4117 2.3660 44 1 -1.9954 8.0308 2.6687 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835160298.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:07 Heat of formation + Delta-G solvation = -143.361752 kcal Electronic energy + Delta-G solvation = -20880.478248 eV Core-core repulsion = 17795.672369 eV Total energy + Delta-G solvation = -3084.805879 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85118 -38.39389 -36.29615 -34.61830 -34.28101 -31.73462 -30.16929 -29.57157 -26.70759 -25.33970 -23.42705 -22.05836 -21.90869 -20.73426 -20.65060 -19.21964 -17.50641 -16.75357 -16.45400 -16.12519 -15.85953 -15.15410 -14.60673 -14.18135 -13.82816 -13.73537 -13.42079 -13.16714 -12.76087 -12.68890 -12.24791 -12.14600 -12.02665 -11.55236 -11.52803 -11.34971 -11.09881 -11.07514 -10.91700 -10.87582 -10.82222 -10.65045 -10.60507 -10.39415 -10.24876 -10.12157 -9.83508 -9.82059 -8.60864 -8.35193 -6.38661 -4.08385 2.34273 2.88358 3.43684 3.45685 3.64549 4.17835 4.26282 4.43396 4.53820 4.79537 4.87625 4.99949 5.05320 5.17929 5.20060 5.26559 5.29360 5.34957 5.38354 5.45650 5.49222 5.54533 5.60268 5.68678 5.69536 5.71288 5.84423 5.88784 5.91403 5.93440 6.04706 6.10035 6.16690 6.22360 6.41603 6.44078 6.74979 6.86826 7.32400 7.44002 7.95129 8.16898 8.43222 8.85066 9.63999 11.02037 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.025281 B = 0.003522 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.301942 B = 7948.359229 C = 8565.412265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.133 4.133 4 C -0.076 4.076 5 H 0.085 0.915 6 C -0.118 4.118 7 C -0.122 4.122 8 C -0.117 4.117 9 C -0.087 4.087 10 H 0.102 0.898 11 C 0.468 3.532 12 O -0.513 6.513 13 O -0.358 6.358 14 C 0.067 3.933 15 C -0.102 4.102 16 C 0.011 3.989 17 C -0.603 4.603 18 H 0.051 0.949 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 1.071 2.929 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.287 1.287 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.010 0.990 43 H 0.010 0.990 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.209 -16.848 -9.445 23.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.170 4.170 4 C -0.094 4.094 5 H 0.104 0.896 6 C -0.155 4.155 7 C -0.159 4.159 8 C -0.155 4.155 9 C -0.106 4.106 10 H 0.121 0.879 11 C 0.312 3.688 12 O -0.401 6.401 13 O -0.275 6.275 14 C -0.006 4.006 15 C -0.139 4.139 16 C -0.026 4.026 17 C -0.641 4.641 18 H 0.069 0.931 19 C -0.189 4.189 20 N -0.548 5.548 21 Si 0.899 3.101 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.214 1.214 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.967 -15.799 -8.787 22.247 hybrid contribution 0.937 -0.742 -0.967 1.538 sum 13.904 -16.541 -9.754 23.708 Atomic orbital electron populations 1.21789 0.95780 1.01460 1.02241 1.21479 0.96013 0.96254 1.01809 1.22019 0.94081 0.97821 1.03101 1.21734 0.95881 0.92859 0.98954 0.89643 1.22468 0.97361 0.99176 0.96546 1.22470 0.97718 0.94590 1.01172 1.22449 0.99151 0.98047 0.95823 1.21805 0.93746 0.93405 1.01649 0.87937 1.23423 0.83975 0.79640 0.81795 1.90625 1.57585 1.54836 1.37085 1.86531 1.49294 1.59014 1.32632 1.23451 0.85690 0.90504 1.00935 1.21606 1.00344 1.00740 0.91250 1.19176 0.91876 0.93226 0.98331 1.21991 1.19785 1.30623 0.91699 0.93080 1.25896 0.93405 0.93602 1.06036 1.70784 1.40779 1.42766 1.00440 0.83520 0.76349 0.76413 0.73849 1.20734 1.21384 1.21377 0.92477 0.92751 0.92813 0.91998 0.92033 0.91334 0.90962 0.91068 0.91250 0.91121 0.91231 0.89574 0.90956 0.91723 0.91715 0.92010 0.92026 0.97183 0.97178 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.91 37.16 0.37 -1.20 16 2 C -0.12 -1.12 5.79 -26.73 -0.15 -1.28 16 3 C -0.13 -1.52 3.40 -26.73 -0.09 -1.62 16 4 C -0.08 -0.73 2.92 -89.50 -0.26 -0.99 16 5 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 6 C -0.12 -0.96 5.55 -25.07 -0.14 -1.09 16 7 C -0.12 -0.92 6.91 -24.74 -0.17 -1.09 16 8 C -0.12 -1.14 6.31 -25.08 -0.16 -1.30 16 9 C -0.09 -0.96 3.40 -90.65 -0.31 -1.27 16 10 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 11 C 0.47 7.18 4.75 36.01 0.17 7.35 16 12 O -0.51 -9.09 14.73 -18.75 -0.28 -9.37 16 13 O -0.36 -6.13 9.83 -39.27 -0.39 -6.52 16 14 C 0.07 1.28 5.47 37.16 0.20 1.48 16 15 C -0.10 -2.18 5.53 -26.73 -0.15 -2.32 16 16 C 0.01 0.29 4.28 -27.88 -0.12 0.17 16 17 C -0.60 -17.40 9.11 -34.44 -0.31 -17.72 16 18 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 19 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 20 N -0.91 -28.27 13.65 55.43 0.76 -27.52 16 21 Si 1.07 25.44 29.90 -169.99 -5.08 20.36 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.52 7.52 -51.93 -0.39 0.13 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.92 6.92 -51.93 -0.36 0.57 16 31 H 0.07 0.96 7.06 -51.93 -0.37 0.59 16 32 H 0.07 0.63 7.75 -51.93 -0.40 0.23 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 1.01 6.91 -51.92 -0.36 0.65 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 39 H 0.06 1.24 8.13 -51.93 -0.42 0.81 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 42 H 0.01 0.27 8.01 -51.93 -0.42 -0.15 16 43 H 0.01 0.27 8.01 -51.93 -0.42 -0.15 16 44 H 0.27 8.30 7.22 -40.82 -0.29 8.00 16 LS Contribution 349.36 15.07 5.26 5.26 Total: -1.00 -31.77 349.36 -9.07 -40.84 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -8.12 Total: -2.49 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -1.22 Total: -20.56 kcal Atomic # 7 Polarization: -28.27 SS G_CDS: 0.76 Total: -27.52 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.66 Total: -15.89 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.08 Total: 20.36 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.77 -9.07 -40.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835160298.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.521 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds