Wall clock time and date at job start Mon Mar 30 2020 00:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47073 * 2 1 4 4 C 1.53001 * 109.47159 * 180.02562 * 3 2 1 5 5 H 1.09005 * 110.05669 * 306.74173 * 4 3 2 6 6 C 1.54267 * 110.03461 * 68.15518 * 4 3 2 7 7 C 1.54889 * 104.19580 * 142.89396 * 6 4 3 8 8 C 1.54887 * 102.75105 * 322.06471 * 7 6 4 9 9 C 1.53876 * 110.03559 * 185.32617 * 4 3 2 10 10 H 1.09000 * 110.07460 * 121.40283 * 9 4 3 11 11 C 1.50701 * 110.02736 * 359.97438 * 9 4 3 12 12 O 1.20824 * 120.00223 * 275.04101 * 11 9 4 13 13 O 1.34236 * 119.99850 * 95.04199 * 11 9 4 14 14 C 1.45198 * 116.99871 * 179.97438 * 13 11 9 15 15 C 1.53003 * 109.46881 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47197 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47322 * 179.97438 * 16 15 14 18 18 H 1.07994 * 119.99743 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00054 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99933 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00075 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47328 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.47301 * 300.00738 * 21 19 17 24 24 H 1.48506 * 109.47217 * 60.00247 * 21 19 17 25 25 H 1.09004 * 109.46481 * 300.00128 * 1 2 3 26 26 H 1.08994 * 109.47403 * 59.99955 * 1 2 3 27 27 H 1.08997 * 109.46797 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46997 * 240.00351 * 2 1 3 29 29 H 1.08994 * 109.47403 * 120.00045 * 2 1 3 30 30 H 1.08992 * 109.47179 * 60.00013 * 3 2 1 31 31 H 1.09003 * 109.47004 * 300.00017 * 3 2 1 32 32 H 1.08998 * 110.48574 * 24.22163 * 6 4 3 33 33 H 1.08995 * 110.59951 * 261.62963 * 6 4 3 34 34 H 1.08998 * 110.75832 * 203.74720 * 7 6 4 35 35 H 1.09005 * 110.91023 * 80.44707 * 7 6 4 36 36 H 1.09010 * 110.48086 * 279.26300 * 8 7 6 37 37 H 1.08996 * 110.60345 * 156.67410 * 8 7 6 38 38 H 1.08992 * 109.47339 * 60.00336 * 14 13 11 39 39 H 1.09006 * 109.47125 * 299.99780 * 14 13 11 40 40 H 1.08999 * 109.47702 * 60.00131 * 15 14 13 41 41 H 1.09002 * 109.46865 * 300.00203 * 15 14 13 42 42 H 1.09004 * 109.47549 * 59.99507 * 16 15 14 43 43 H 1.09002 * 109.47186 * 299.99771 * 16 15 14 44 44 H 0.97003 * 120.00265 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9442 0.8299 0.8196 6 6 4.0979 0.9035 -1.3462 7 6 5.3530 1.7643 -1.6341 8 6 4.9271 3.1673 -1.1352 9 6 4.0972 2.8819 0.1335 10 1 4.7269 2.9687 1.0190 11 6 2.9439 3.8477 0.2236 12 8 2.4223 4.2616 -0.7847 13 8 2.4960 4.2482 1.4240 14 6 1.3824 5.1798 1.4347 15 6 1.0152 5.5190 2.8808 16 6 -0.1587 6.5001 2.8923 17 6 -0.5208 6.8337 4.3166 18 1 0.0309 6.3899 5.1321 19 6 -1.5564 7.7055 4.5786 20 7 -2.2285 8.2455 3.5855 21 14 -2.0056 8.1184 6.3441 22 1 -3.1449 9.0708 6.3552 23 1 -2.3925 6.8761 7.0600 24 1 -0.8369 8.7360 7.0208 25 1 -0.3632 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.3535 1.0404 -2.1305 33 1 4.3689 -0.1486 -1.2581 34 1 5.5714 1.7838 -2.7018 35 1 6.2126 1.3990 -1.0720 36 1 4.3164 3.6698 -1.8854 37 1 5.8021 3.7696 -0.8911 38 1 0.5244 4.7263 0.9385 39 1 1.6662 6.0915 0.9090 40 1 1.8732 5.9727 3.3768 41 1 0.7315 4.6074 3.4070 42 1 -1.0167 6.0461 2.3964 43 1 0.1246 7.4117 2.3660 44 1 -1.9954 8.0308 2.6687 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835160298.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:07 Heat of formation + Delta-G solvation = -158.934884 kcal Electronic energy + Delta-G solvation = -20881.153550 eV Core-core repulsion = 17795.672369 eV Total energy + Delta-G solvation = -3085.481181 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.03841 -39.40215 -37.68244 -36.31067 -35.41683 -33.71087 -31.02076 -30.42152 -28.57227 -26.21294 -25.29752 -23.39941 -22.69160 -22.48684 -21.45090 -20.30989 -19.08840 -18.50464 -17.78372 -17.35556 -16.79275 -16.01043 -15.68368 -15.65093 -15.63426 -15.13381 -14.62219 -14.27979 -14.18307 -13.92220 -13.62271 -13.45516 -13.01639 -12.81973 -12.70791 -12.70508 -12.35427 -12.17408 -12.13221 -12.01212 -11.91945 -11.83365 -11.78239 -11.59454 -11.56906 -11.47205 -11.35521 -11.21756 -10.77051 -10.58539 -8.73834 -6.45199 1.10864 1.52275 1.60273 1.61415 1.80967 2.55806 3.11852 3.33367 3.48811 3.58950 3.82491 3.84289 3.90753 4.03199 4.19330 4.23062 4.25782 4.38257 4.43373 4.52048 4.54928 4.57957 4.62567 4.66835 4.68219 4.83457 4.84808 4.90965 4.95750 5.01450 5.12499 5.18975 5.19638 5.21087 5.26720 5.34424 5.35002 5.38235 5.42403 5.51900 5.91478 6.12460 6.50106 6.66601 7.37439 8.67159 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.025281 B = 0.003522 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.301942 B = 7948.359229 C = 8565.412265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.113 4.113 3 C -0.131 4.131 4 C -0.074 4.074 5 H 0.109 0.891 6 C -0.115 4.115 7 C -0.114 4.114 8 C -0.119 4.119 9 C -0.085 4.085 10 H 0.123 0.877 11 C 0.465 3.535 12 O -0.542 6.542 13 O -0.360 6.360 14 C 0.079 3.921 15 C -0.087 4.087 16 C 0.010 3.990 17 C -0.621 4.621 18 H 0.057 0.943 19 C -0.040 4.040 20 N -0.937 5.937 21 Si 1.121 2.879 22 H -0.284 1.284 23 H -0.267 1.267 24 H -0.266 1.266 25 H 0.040 0.960 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.065 0.935 42 H -0.008 1.008 43 H -0.007 1.007 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.281 -18.843 -8.475 26.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.150 4.150 3 C -0.169 4.169 4 C -0.092 4.092 5 H 0.127 0.873 6 C -0.153 4.153 7 C -0.151 4.151 8 C -0.156 4.156 9 C -0.105 4.105 10 H 0.141 0.859 11 C 0.311 3.689 12 O -0.432 6.432 13 O -0.276 6.276 14 C 0.005 3.995 15 C -0.124 4.124 16 C -0.027 4.027 17 C -0.658 4.658 18 H 0.075 0.925 19 C -0.237 4.237 20 N -0.574 5.574 21 Si 0.941 3.059 22 H -0.209 1.209 23 H -0.192 1.192 24 H -0.191 1.191 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.011 0.989 43 H 0.011 0.989 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.069 -17.819 -7.836 24.617 hybrid contribution 0.299 -0.135 -1.347 1.386 sum 15.368 -17.954 -9.183 25.355 Atomic orbital electron populations 1.21821 0.96618 1.02164 1.00972 1.21466 0.95279 0.94993 1.03248 1.21964 0.95781 0.98665 1.00464 1.21834 0.94258 0.92137 1.00960 0.87299 1.22470 0.97219 1.00641 0.94937 1.22476 0.98019 0.92563 1.02025 1.22492 0.98921 0.99784 0.94439 1.22091 0.92165 0.92900 1.03307 0.85921 1.24436 0.84427 0.79464 0.80617 1.90615 1.58758 1.55999 1.37814 1.86528 1.48467 1.58602 1.34026 1.23038 0.86457 0.90896 0.99127 1.21318 0.98606 0.99627 0.92892 1.19103 0.93091 0.93577 0.96910 1.22435 1.19884 1.30537 0.92982 0.92486 1.27564 0.93288 0.93227 1.09627 1.70923 1.41984 1.44223 1.00280 0.82897 0.76759 0.77132 0.69084 1.20906 1.19170 1.19131 0.94082 0.93742 0.91085 0.90300 0.90639 0.93987 0.93607 0.92443 0.88801 0.90271 0.89034 0.92183 0.89550 0.92421 0.92185 0.91454 0.91596 0.98943 0.98858 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 9.91 71.98 0.71 -2.44 16 2 C -0.11 -1.97 5.79 30.60 0.18 -1.80 16 3 C -0.13 -2.97 3.40 30.60 0.10 -2.86 16 4 C -0.07 -1.26 2.92 -10.07 -0.03 -1.29 16 5 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 6 C -0.12 -1.54 5.55 31.67 0.18 -1.36 16 7 C -0.11 -1.35 6.91 31.88 0.22 -1.13 16 8 C -0.12 -2.11 6.31 31.67 0.20 -1.91 16 9 C -0.09 -1.76 3.40 -10.82 -0.04 -1.80 16 10 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 11 C 0.47 14.36 4.75 71.24 0.34 14.70 16 12 O -0.54 -19.93 14.73 21.97 0.32 -19.61 16 13 O -0.36 -12.36 9.83 -51.47 -0.51 -12.87 16 14 C 0.08 3.06 5.47 71.98 0.39 3.46 16 15 C -0.09 -3.76 5.53 30.59 0.17 -3.59 16 16 C 0.01 0.55 4.28 29.85 0.13 0.68 16 17 C -0.62 -36.12 9.11 25.60 0.23 -35.89 16 18 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 19 C -0.04 -2.35 5.46 84.66 0.46 -1.89 16 20 N -0.94 -59.32 13.65 21.45 0.29 -59.03 16 21 Si 1.12 50.48 29.90 68.60 2.05 52.53 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 23 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.14 7.52 -2.39 -0.02 1.12 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.04 1.15 6.92 -2.39 -0.02 1.14 16 31 H 0.05 1.26 7.06 -2.39 -0.02 1.24 16 32 H 0.06 0.94 7.75 -2.39 -0.02 0.92 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.06 1.40 6.91 -2.38 -0.02 1.38 16 37 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.06 2.31 8.13 -2.39 -0.02 2.29 16 39 H 0.06 2.38 8.13 -2.38 -0.02 2.36 16 40 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 41 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 42 H -0.01 -0.44 8.01 -2.38 -0.02 -0.46 16 43 H -0.01 -0.39 8.01 -2.39 -0.02 -0.41 16 44 H 0.25 16.36 7.22 -92.71 -0.67 15.69 16 Total: -1.00 -70.14 349.36 6.44 -63.69 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 1.03 Total: 12.40 kcal Atomic # 6 Polarization: -40.37 SS G_CDS: 3.25 Total: -37.12 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: 0.29 Total: -59.03 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -0.18 Total: -32.48 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 2.05 Total: 52.53 kcal Total: -70.14 6.44 -63.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835160298.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.240 kcal (2) G-P(sol) polarization free energy of solvation -70.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds