Wall clock time and date at job start Mon Mar 30 2020 01:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47199 * 2 1 4 4 C 1.52997 * 109.46742 * 239.99956 * 2 1 3 5 5 C 1.53001 * 109.47574 * 300.00079 * 4 2 1 6 6 C 1.53004 * 109.46954 * 300.00412 * 5 4 2 7 7 H 1.09009 * 109.46978 * 299.99801 * 6 5 4 8 8 C 1.50695 * 109.47263 * 179.97438 * 6 5 4 9 9 O 1.20820 * 120.00172 * 239.99951 * 8 6 5 10 10 O 1.34230 * 119.99975 * 59.99971 * 8 6 5 11 11 C 1.45203 * 117.00160 * 180.02562 * 10 8 6 12 12 C 1.52996 * 109.47110 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.46736 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.47153 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 C 1.52997 * 109.47316 * 59.99430 * 6 5 4 23 23 C 1.52998 * 109.47226 * 300.00192 * 22 6 5 24 24 H 1.09001 * 109.47443 * 300.00041 * 23 22 6 25 25 C 1.53007 * 109.47241 * 180.02562 * 23 22 6 26 26 H 1.09004 * 109.46880 * 299.99798 * 1 2 3 27 27 H 1.08997 * 109.47437 * 59.99557 * 1 2 3 28 28 H 1.08998 * 109.47440 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47255 * 60.00050 * 4 2 1 30 30 H 1.09004 * 109.47443 * 179.97438 * 4 2 1 31 31 H 1.08994 * 109.47286 * 180.02562 * 5 4 2 32 32 H 1.08996 * 109.46843 * 60.00028 * 5 4 2 33 33 H 1.09007 * 109.47129 * 59.99305 * 11 10 8 34 34 H 1.09001 * 109.46696 * 299.99394 * 11 10 8 35 35 H 1.08999 * 109.46983 * 60.00328 * 12 11 10 36 36 H 1.08993 * 109.47310 * 299.99768 * 12 11 10 37 37 H 1.09004 * 109.47178 * 60.00488 * 13 12 11 38 38 H 1.08993 * 109.47411 * 300.00171 * 13 12 11 39 39 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 40 40 H 1.08996 * 109.47012 * 60.00058 * 22 6 5 41 41 H 1.09001 * 109.47255 * 180.02562 * 22 6 5 42 42 H 1.08997 * 109.46751 * 60.00001 * 25 23 22 43 43 H 1.08998 * 109.46836 * 180.02562 * 25 23 22 44 44 H 1.09009 * 109.46785 * 300.00070 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5299 -2.1638 -1.2493 6 6 2.0398 -2.8851 0.0000 7 1 3.1299 -2.8851 0.0000 8 6 1.5370 -4.3056 0.0003 9 8 0.8425 -4.7005 0.9066 10 8 1.8608 -5.1324 -1.0064 11 6 1.3408 -6.4865 -0.9406 12 6 1.8114 -7.2736 -2.1652 13 6 1.2638 -8.7006 -2.0955 14 6 1.7268 -9.4759 -3.3021 15 1 2.3497 -8.9986 -4.0441 16 6 1.3553 -10.7943 -3.4587 17 7 0.6013 -11.3771 -2.5523 18 14 1.9298 -11.7554 -4.9539 19 1 1.4033 -13.1422 -4.8833 20 1 1.4287 -11.0978 -6.1875 21 1 3.4142 -11.7902 -4.9796 22 6 1.5299 -2.1638 1.2492 23 6 2.0400 -0.7213 1.2492 24 1 3.1300 -0.7213 1.2491 25 6 1.5306 -0.0002 2.4988 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.6765 -0.2074 -2.1392 30 1 3.1299 -0.7209 -1.2496 31 1 1.8935 -2.6777 -2.1390 32 1 0.4399 -2.1637 -1.2493 33 1 0.2512 -6.4569 -0.9247 34 1 1.7043 -6.9717 -0.0347 35 1 2.9008 -7.3033 -2.1814 36 1 1.4476 -6.7884 -3.0709 37 1 0.1743 -8.6714 -2.0791 38 1 1.6279 -9.1857 -1.1899 39 1 0.3031 -10.8782 -1.7758 40 1 0.4400 -2.1637 1.2492 41 1 1.8936 -2.6774 2.1392 42 1 1.8943 -0.5142 3.3885 43 1 1.8936 1.0275 2.4985 44 1 0.4405 -0.0002 2.4993 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835160349.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:49 Heat of formation + Delta-G solvation = -142.363999 kcal Electronic energy + Delta-G solvation = -20675.602870 eV Core-core repulsion = 17590.840257 eV Total energy + Delta-G solvation = -3084.762613 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.77671 -39.17711 -36.47936 -34.30587 -33.30370 -32.13714 -31.60047 -27.97578 -26.98184 -26.03982 -24.04596 -22.77260 -21.98610 -20.67950 -20.29444 -18.79874 -17.39091 -16.73199 -16.32382 -16.25748 -15.69666 -15.36302 -14.53825 -14.09264 -13.74894 -13.69177 -13.51374 -13.12235 -12.94203 -12.80436 -12.41317 -12.24700 -12.17474 -12.06517 -11.59825 -11.55575 -11.37423 -11.01300 -10.91367 -10.87842 -10.69559 -10.50751 -10.43450 -10.29333 -10.21535 -10.10555 -9.84029 -9.80612 -8.61008 -8.35367 -6.38818 -4.08595 2.32781 2.86041 3.43540 3.45591 3.64443 4.31330 4.35863 4.38602 4.53809 4.72708 4.77655 4.91616 4.97213 5.03857 5.15769 5.27546 5.30350 5.37065 5.38169 5.42944 5.48712 5.52906 5.55246 5.60199 5.70641 5.73609 5.76656 5.81968 5.90494 5.92678 6.02241 6.04468 6.08869 6.27617 6.41429 6.42828 6.74165 6.86160 7.32257 7.43877 7.92155 8.16571 8.43013 8.84916 9.63861 11.01924 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.044617 B = 0.002901 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.407553 B = 9649.805019 C = 9974.402859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.089 4.089 3 H 0.070 0.930 4 C -0.112 4.112 5 C -0.114 4.114 6 C -0.078 4.078 7 H 0.106 0.894 8 C 0.459 3.541 9 O -0.513 6.513 10 O -0.356 6.356 11 C 0.067 3.933 12 C -0.101 4.101 13 C 0.011 3.989 14 C -0.603 4.603 15 H 0.051 0.949 16 C 0.014 3.986 17 N -0.912 5.912 18 Si 1.071 2.929 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.287 1.287 22 C -0.101 4.101 23 C -0.086 4.086 24 H 0.071 0.929 25 C -0.149 4.149 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.010 0.990 38 H 0.010 0.990 39 H 0.269 0.731 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.904 25.336 6.253 26.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.107 4.107 3 H 0.089 0.911 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.097 4.097 7 H 0.124 0.876 8 C 0.302 3.698 9 O -0.401 6.401 10 O -0.273 6.273 11 C -0.006 4.006 12 C -0.139 4.139 13 C -0.026 4.026 14 C -0.641 4.641 15 H 0.069 0.931 16 C -0.190 4.190 17 N -0.548 5.548 18 Si 0.899 3.101 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.214 1.214 22 C -0.138 4.138 23 C -0.104 4.104 24 H 0.090 0.910 25 C -0.206 4.206 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.611 23.681 5.775 24.514 hybrid contribution 0.010 1.337 0.882 1.601 sum 2.621 25.018 6.657 26.020 Atomic orbital electron populations 1.22018 0.95298 1.02382 1.01562 1.21161 0.96128 0.99033 0.94384 0.91127 1.21568 1.00806 0.94803 0.97809 1.21573 1.01608 0.95624 0.96361 1.21076 1.02581 0.87727 0.98366 0.87624 1.23707 0.77757 0.88668 0.79669 1.90643 1.35770 1.77410 1.36326 1.86500 1.69556 1.24897 1.46331 1.23470 0.98725 0.77102 1.01314 1.21604 1.01189 0.96701 0.94425 1.19179 0.95860 0.89748 0.97842 1.21991 1.35435 0.98809 1.07855 0.93075 1.25898 0.94825 0.95664 1.02565 1.70785 1.33073 1.39887 1.11048 0.83519 0.75971 0.76116 0.74519 1.20729 1.21378 1.21378 1.21542 1.02065 0.94278 0.95954 1.21144 1.00239 0.94218 0.94848 0.91017 1.21872 1.01626 0.99970 0.97122 0.92461 0.92832 0.91960 0.91349 0.91568 0.90293 0.91072 0.91690 0.91684 0.92001 0.91988 0.97173 0.97166 0.92087 0.90600 0.91105 0.92648 0.92671 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 8.15 37.16 0.30 -0.84 16 2 C -0.09 -0.62 2.72 -90.62 -0.25 -0.87 16 3 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.11 -0.83 5.45 -26.73 -0.15 -0.97 16 5 C -0.11 -1.09 4.86 -26.73 -0.13 -1.22 16 6 C -0.08 -0.85 2.63 -91.77 -0.24 -1.09 16 7 H 0.11 1.01 8.14 -51.92 -0.42 0.58 16 8 C 0.46 7.06 7.25 36.00 0.26 7.33 16 9 O -0.51 -9.29 15.73 -18.75 -0.29 -9.59 16 10 O -0.36 -6.07 10.12 -39.26 -0.40 -6.47 16 11 C 0.07 1.27 5.47 37.16 0.20 1.47 16 12 C -0.10 -2.17 5.53 -26.73 -0.15 -2.31 16 13 C 0.01 0.28 4.28 -27.88 -0.12 0.16 16 14 C -0.60 -17.39 9.11 -34.44 -0.31 -17.71 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 16 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 17 N -0.91 -28.30 13.65 55.43 0.76 -27.55 16 18 Si 1.07 25.43 29.90 -169.99 -5.08 20.35 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 C -0.10 -1.00 3.50 -26.73 -0.09 -1.09 16 23 C -0.09 -0.65 2.49 -90.62 -0.23 -0.87 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 C -0.15 -1.01 8.84 37.16 0.33 -0.68 16 26 H 0.06 0.39 6.43 -51.93 -0.33 0.05 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.53 4.81 -51.93 -0.25 0.28 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16 32 H 0.07 0.71 6.43 -51.93 -0.33 0.38 16 33 H 0.06 1.24 8.13 -51.93 -0.42 0.81 16 34 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.01 0.27 8.01 -51.93 -0.42 -0.15 16 38 H 0.01 0.27 8.00 -51.93 -0.42 -0.14 16 39 H 0.27 8.30 7.22 -40.82 -0.29 8.01 16 40 H 0.08 0.82 6.39 -51.93 -0.33 0.49 16 41 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.41 6.43 -51.92 -0.33 0.08 16 LS Contribution 341.85 15.07 5.15 5.15 Total: -1.00 -31.90 341.85 -8.36 -40.25 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -7.83 Total: -3.77 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -0.67 Total: -18.38 kcal Atomic # 7 Polarization: -28.30 SS G_CDS: 0.76 Total: -27.55 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.69 Total: -16.06 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.08 Total: 20.35 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.90 -8.36 -40.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835160349.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.109 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds