Wall clock time and date at job start Mon Mar 30 2020 01:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47199 * 2 1 4 4 C 1.52997 * 109.46742 * 239.99956 * 2 1 3 5 5 C 1.53001 * 109.47574 * 300.00079 * 4 2 1 6 6 C 1.53004 * 109.46954 * 300.00412 * 5 4 2 7 7 H 1.09009 * 109.46978 * 299.99801 * 6 5 4 8 8 C 1.50695 * 109.47263 * 179.97438 * 6 5 4 9 9 O 1.20820 * 120.00172 * 239.99951 * 8 6 5 10 10 O 1.34230 * 119.99975 * 59.99971 * 8 6 5 11 11 C 1.45203 * 117.00160 * 180.02562 * 10 8 6 12 12 C 1.52996 * 109.47110 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.46736 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.47153 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 C 1.52997 * 109.47316 * 59.99430 * 6 5 4 23 23 C 1.52998 * 109.47226 * 300.00192 * 22 6 5 24 24 H 1.09001 * 109.47443 * 300.00041 * 23 22 6 25 25 C 1.53007 * 109.47241 * 180.02562 * 23 22 6 26 26 H 1.09004 * 109.46880 * 299.99798 * 1 2 3 27 27 H 1.08997 * 109.47437 * 59.99557 * 1 2 3 28 28 H 1.08998 * 109.47440 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47255 * 60.00050 * 4 2 1 30 30 H 1.09004 * 109.47443 * 179.97438 * 4 2 1 31 31 H 1.08994 * 109.47286 * 180.02562 * 5 4 2 32 32 H 1.08996 * 109.46843 * 60.00028 * 5 4 2 33 33 H 1.09007 * 109.47129 * 59.99305 * 11 10 8 34 34 H 1.09001 * 109.46696 * 299.99394 * 11 10 8 35 35 H 1.08999 * 109.46983 * 60.00328 * 12 11 10 36 36 H 1.08993 * 109.47310 * 299.99768 * 12 11 10 37 37 H 1.09004 * 109.47178 * 60.00488 * 13 12 11 38 38 H 1.08993 * 109.47411 * 300.00171 * 13 12 11 39 39 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 40 40 H 1.08996 * 109.47012 * 60.00058 * 22 6 5 41 41 H 1.09001 * 109.47255 * 180.02562 * 22 6 5 42 42 H 1.08997 * 109.46751 * 60.00001 * 25 23 22 43 43 H 1.08998 * 109.46836 * 180.02562 * 25 23 22 44 44 H 1.09009 * 109.46785 * 300.00070 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5299 -2.1638 -1.2493 6 6 2.0398 -2.8851 0.0000 7 1 3.1299 -2.8851 0.0000 8 6 1.5370 -4.3056 0.0003 9 8 0.8425 -4.7005 0.9066 10 8 1.8608 -5.1324 -1.0064 11 6 1.3408 -6.4865 -0.9406 12 6 1.8114 -7.2736 -2.1652 13 6 1.2638 -8.7006 -2.0955 14 6 1.7268 -9.4759 -3.3021 15 1 2.3497 -8.9986 -4.0441 16 6 1.3553 -10.7943 -3.4587 17 7 0.6013 -11.3771 -2.5523 18 14 1.9298 -11.7554 -4.9539 19 1 1.4033 -13.1422 -4.8833 20 1 1.4287 -11.0978 -6.1875 21 1 3.4142 -11.7902 -4.9796 22 6 1.5299 -2.1638 1.2492 23 6 2.0400 -0.7213 1.2492 24 1 3.1300 -0.7213 1.2491 25 6 1.5306 -0.0002 2.4988 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.6765 -0.2074 -2.1392 30 1 3.1299 -0.7209 -1.2496 31 1 1.8935 -2.6777 -2.1390 32 1 0.4399 -2.1637 -1.2493 33 1 0.2512 -6.4569 -0.9247 34 1 1.7043 -6.9717 -0.0347 35 1 2.9008 -7.3033 -2.1814 36 1 1.4476 -6.7884 -3.0709 37 1 0.1743 -8.6714 -2.0791 38 1 1.6279 -9.1857 -1.1899 39 1 0.3031 -10.8782 -1.7758 40 1 0.4400 -2.1637 1.2492 41 1 1.8936 -2.6774 2.1392 42 1 1.8943 -0.5142 3.3885 43 1 1.8936 1.0275 2.4985 44 1 0.4405 -0.0002 2.4993 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835160349.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:48 Heat of formation + Delta-G solvation = -158.258598 kcal Electronic energy + Delta-G solvation = -20676.292112 eV Core-core repulsion = 17590.840257 eV Total energy + Delta-G solvation = -3085.451855 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.92883 -40.07092 -37.90999 -36.31039 -34.18675 -33.52278 -32.79115 -28.90188 -28.47143 -26.88614 -25.48506 -24.33131 -22.65541 -22.48898 -21.48558 -19.50767 -19.06574 -18.40074 -17.71277 -17.47763 -16.53469 -16.01007 -15.83835 -15.65052 -15.34187 -14.94837 -14.60236 -14.37001 -14.03912 -13.70120 -13.60981 -13.47638 -13.29702 -12.81268 -12.79080 -12.69500 -12.65568 -12.22410 -12.17993 -12.10801 -12.02272 -11.89933 -11.67142 -11.61419 -11.54027 -11.13846 -11.01706 -10.91195 -10.75184 -10.57968 -8.73190 -6.44566 1.07135 1.52505 1.58180 1.61796 1.81269 2.56247 3.12437 3.41896 3.60820 3.66374 3.84459 3.91712 3.99237 4.06286 4.14809 4.24755 4.25386 4.33058 4.50491 4.58823 4.59520 4.63383 4.69479 4.76072 4.80132 4.84886 4.92972 4.98626 5.09163 5.12162 5.16044 5.17855 5.24486 5.31016 5.36369 5.36493 5.41553 5.45037 5.49466 5.66442 5.92240 6.13302 6.50811 6.62355 7.38080 8.67920 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.044617 B = 0.002901 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.407553 B = 9649.805019 C = 9974.402859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.086 4.086 3 H 0.088 0.912 4 C -0.107 4.107 5 C -0.112 4.112 6 C -0.071 4.071 7 H 0.127 0.873 8 C 0.456 3.544 9 O -0.544 6.544 10 O -0.356 6.356 11 C 0.077 3.923 12 C -0.087 4.087 13 C 0.010 3.990 14 C -0.620 4.620 15 H 0.057 0.943 16 C -0.040 4.040 17 N -0.938 5.938 18 Si 1.121 2.879 19 H -0.284 1.284 20 H -0.266 1.266 21 H -0.267 1.267 22 C -0.098 4.098 23 C -0.081 4.081 24 H 0.083 0.917 25 C -0.148 4.148 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.044 0.956 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.067 0.933 37 H -0.007 1.007 38 H -0.007 1.007 39 H 0.255 0.745 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.069 0.931 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.354 27.369 5.201 28.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.104 4.104 3 H 0.106 0.894 4 C -0.145 4.145 5 C -0.150 4.150 6 C -0.090 4.090 7 H 0.145 0.855 8 C 0.301 3.699 9 O -0.434 6.434 10 O -0.272 6.272 11 C 0.003 3.997 12 C -0.124 4.124 13 C -0.027 4.027 14 C -0.658 4.658 15 H 0.075 0.925 16 C -0.237 4.237 17 N -0.575 5.575 18 Si 0.941 3.059 19 H -0.209 1.209 20 H -0.191 1.191 21 H -0.192 1.192 22 C -0.136 4.136 23 C -0.099 4.099 24 H 0.102 0.898 25 C -0.205 4.205 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.011 0.989 38 H 0.011 0.989 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.068 25.756 4.733 26.502 hybrid contribution -0.476 0.752 1.274 1.554 sum 3.592 26.509 6.007 27.417 Atomic orbital electron populations 1.22018 0.95828 1.01387 1.02095 1.21173 0.95651 0.99802 0.93789 0.89362 1.21566 1.01531 0.92946 0.98431 1.21586 1.01117 0.97108 0.95190 1.21266 1.03624 0.84481 0.99640 0.85531 1.24748 0.76901 0.89802 0.78473 1.90632 1.37282 1.78120 1.37365 1.86499 1.69543 1.23927 1.47248 1.23088 0.98341 0.78347 0.99929 1.21316 1.01171 0.94244 0.95702 1.19109 0.94826 0.92471 0.96326 1.22441 1.35245 0.99436 1.08667 0.92465 1.27557 0.94098 0.97358 1.04735 1.70923 1.34897 1.40113 1.11573 0.82900 0.76759 0.74635 0.71601 1.20944 1.19141 1.19159 1.21538 1.01222 0.95881 0.94917 1.21137 1.00841 0.92355 0.95581 0.89840 1.21868 1.01388 1.00661 0.96617 0.92023 0.92262 0.93707 0.90342 0.90304 0.90771 0.92003 0.92173 0.92097 0.91453 0.91449 0.98879 0.98859 0.93580 0.92033 0.92206 0.92945 0.91217 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 8.15 71.98 0.59 -1.46 16 2 C -0.09 -0.97 2.72 -10.80 -0.03 -1.00 16 3 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 4 C -0.11 -1.28 5.45 30.59 0.17 -1.11 16 5 C -0.11 -1.98 4.86 30.60 0.15 -1.83 16 6 C -0.07 -1.46 2.63 -11.54 -0.03 -1.49 16 7 H 0.13 2.11 8.14 -2.38 -0.02 2.09 16 8 C 0.46 13.95 7.25 71.23 0.52 14.46 16 9 O -0.54 -20.07 15.73 21.98 0.35 -19.72 16 10 O -0.36 -11.96 10.12 -51.42 -0.52 -12.48 16 11 C 0.08 2.94 5.47 71.98 0.39 3.33 16 12 C -0.09 -3.70 5.53 30.59 0.17 -3.53 16 13 C 0.01 0.52 4.28 29.85 0.13 0.65 16 14 C -0.62 -35.88 9.11 25.60 0.23 -35.64 16 15 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 16 C -0.04 -2.37 5.46 84.65 0.46 -1.91 16 17 N -0.94 -59.22 13.65 21.45 0.29 -58.93 16 18 Si 1.12 50.31 29.90 68.60 2.05 52.36 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 20 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 21 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 22 C -0.10 -1.85 3.50 30.59 0.11 -1.75 16 23 C -0.08 -1.03 2.49 -10.79 -0.03 -1.06 16 24 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 25 C -0.15 -1.73 8.84 71.98 0.64 -1.09 16 26 H 0.06 0.74 6.43 -2.39 -0.02 0.73 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.04 0.75 4.81 -2.39 -0.01 0.73 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 1.38 8.11 -2.39 -0.02 1.36 16 32 H 0.06 1.20 6.43 -2.39 -0.02 1.19 16 33 H 0.06 2.35 8.13 -2.38 -0.02 2.33 16 34 H 0.06 2.37 8.13 -2.39 -0.02 2.35 16 35 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 36 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 37 H -0.01 -0.40 8.01 -2.39 -0.02 -0.42 16 38 H -0.01 -0.39 8.00 -2.39 -0.02 -0.41 16 39 H 0.25 16.31 7.22 -92.71 -0.67 15.64 16 40 H 0.06 1.34 6.39 -2.39 -0.02 1.33 16 41 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 42 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.05 0.69 6.43 -2.38 -0.02 0.68 16 Total: -1.00 -68.89 341.85 6.68 -62.22 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 1.05 Total: 9.99 kcal Atomic # 6 Polarization: -36.89 SS G_CDS: 3.46 Total: -33.43 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: 0.29 Total: -58.93 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.17 Total: -32.21 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 2.05 Total: 52.36 kcal Total: -68.89 6.68 -62.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835160349.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.042 kcal (2) G-P(sol) polarization free energy of solvation -68.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds