Wall clock time and date at job start Mon Mar 30 2020 01:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46888 * 2 1 4 4 C 1.52996 * 109.47255 * 239.99431 * 2 1 3 5 5 C 1.52997 * 109.46880 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47257 * 60.00517 * 5 4 2 7 7 H 1.09001 * 109.47204 * 59.99187 * 6 5 4 8 8 C 1.50695 * 109.47319 * 179.97438 * 6 5 4 9 9 O 1.20825 * 120.00224 * 119.99559 * 8 6 5 10 10 O 1.34232 * 119.99727 * 299.99634 * 8 6 5 11 11 C 1.45206 * 116.99878 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.47129 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.46965 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.46857 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99963 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00204 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99565 * 0.02562 * 16 14 13 18 18 Si 1.86790 * 120.00144 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47376 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47084 * 120.00373 * 18 16 14 21 21 H 1.48497 * 109.47286 * 240.00177 * 18 16 14 22 22 C 1.53009 * 109.46628 * 299.99786 * 6 5 4 23 23 C 1.52997 * 109.46754 * 119.99305 * 2 1 3 24 24 H 1.08997 * 109.47193 * 60.00336 * 23 2 1 25 25 C 1.52997 * 109.47668 * 300.00267 * 23 2 1 26 26 H 1.08998 * 109.47657 * 300.00526 * 1 2 3 27 27 H 1.09003 * 109.46932 * 60.00215 * 1 2 3 28 28 H 1.09001 * 109.47487 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47192 * 299.99970 * 4 2 1 30 30 H 1.09003 * 109.46861 * 60.00311 * 4 2 1 31 31 H 1.09001 * 109.47677 * 299.99994 * 5 4 2 32 32 H 1.09008 * 109.47127 * 180.02562 * 5 4 2 33 33 H 1.09004 * 109.47122 * 299.99817 * 11 10 8 34 34 H 1.09000 * 109.47070 * 59.99842 * 11 10 8 35 35 H 1.09004 * 109.46930 * 299.99887 * 12 11 10 36 36 H 1.09004 * 109.47059 * 59.99488 * 12 11 10 37 37 H 1.09004 * 109.46976 * 299.99579 * 13 12 11 38 38 H 1.08992 * 109.47530 * 59.99431 * 13 12 11 39 39 H 0.97002 * 119.99803 * 179.97438 * 17 16 14 40 40 H 1.08995 * 109.46886 * 180.02562 * 22 6 5 41 41 H 1.09001 * 109.46838 * 299.99625 * 22 6 5 42 42 H 1.09010 * 109.47160 * 300.00409 * 25 23 2 43 43 H 1.09004 * 109.47143 * 59.99563 * 25 23 2 44 44 H 1.09000 * 109.47785 * 180.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5700 -0.7207 -1.2494 6 6 4.0805 -1.4416 -0.0001 7 1 3.7175 -2.4694 0.0002 8 6 5.5874 -1.4416 -0.0006 9 8 6.1919 -0.9180 0.9051 10 8 6.2582 -2.0232 -1.0074 11 6 7.7083 -1.9856 -0.9419 12 6 8.2926 -2.6924 -2.1666 13 6 9.8205 -2.6534 -2.0972 14 6 10.3961 -3.3500 -3.3032 15 1 9.7379 -3.7774 -4.0452 16 6 11.7630 -3.4408 -3.4600 17 7 12.5644 -2.9199 -2.5567 18 14 12.4763 -4.3050 -4.9544 19 1 11.3715 -4.8009 -5.8138 20 1 13.3125 -3.3505 -5.7258 21 1 13.3121 -5.4499 -4.5122 22 6 3.5704 -0.7202 1.2491 23 6 2.0399 -0.7211 1.2493 24 1 1.6766 -1.7487 1.2494 25 6 1.5298 0.0002 2.4985 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.6767 -1.7490 -1.2490 30 1 1.6767 -0.2075 -2.1392 31 1 3.9330 0.3070 -1.2497 32 1 3.9334 -1.2343 -2.1396 33 1 8.0446 -0.9489 -0.9262 34 1 8.0442 -2.4903 -0.0360 35 1 7.9564 -3.7291 -2.1827 36 1 7.9566 -2.1874 -3.0723 37 1 10.1571 -1.6167 -2.0809 38 1 10.1562 -3.1585 -1.1916 39 1 13.5260 -2.9841 -2.6667 40 1 3.9344 -1.2334 2.1391 41 1 3.9334 0.3076 1.2488 42 1 1.8931 1.0279 2.4985 43 1 0.4398 0.0002 2.4984 44 1 1.8935 -0.5133 3.3886 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835160351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:54 Heat of formation + Delta-G solvation = -157.919625 kcal Electronic energy + Delta-G solvation = -20445.535203 eV Core-core repulsion = 17360.098046 eV Total energy + Delta-G solvation = -3085.437156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.81293 -39.81139 -37.81856 -35.95847 -34.38550 -33.59815 -32.93128 -29.25243 -28.38645 -27.01289 -25.26109 -23.50974 -22.69800 -22.18968 -21.16617 -20.65332 -18.75985 -18.36372 -17.68210 -17.33300 -16.50454 -16.10108 -15.60046 -15.40904 -15.18315 -14.85908 -14.78760 -14.21094 -13.93274 -13.81175 -13.51859 -13.48037 -12.96561 -12.85587 -12.69830 -12.63116 -12.52099 -12.51182 -12.28897 -12.10107 -11.92617 -11.87298 -11.73891 -11.51736 -11.43509 -11.31991 -11.24411 -10.91840 -10.87412 -10.59538 -8.23260 -6.34950 1.12775 1.40862 1.41213 1.54754 1.65262 2.40576 3.10684 3.47284 3.64427 3.66700 3.96136 4.01534 4.04148 4.04813 4.12419 4.30817 4.38203 4.41819 4.51159 4.60882 4.73846 4.74944 4.77035 4.87312 4.87830 4.95025 5.00936 5.05658 5.11624 5.12908 5.18938 5.20906 5.30683 5.33140 5.41736 5.44560 5.51955 5.57374 5.61345 5.66064 5.78441 6.17427 6.67850 6.81306 7.34735 8.89336 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.046261 B = 0.002798 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.119199 B =10005.509909 C =10466.667410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.064 0.936 4 C -0.107 4.107 5 C -0.110 4.110 6 C -0.072 4.072 7 H 0.127 0.873 8 C 0.456 3.544 9 O -0.545 6.545 10 O -0.356 6.356 11 C 0.076 3.924 12 C -0.092 4.092 13 C 0.025 3.975 14 C -0.542 4.542 15 H 0.066 0.934 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.971 3.029 19 H -0.259 1.259 20 H -0.278 1.278 21 H -0.278 1.278 22 C -0.096 4.096 23 C -0.080 4.080 24 H 0.083 0.917 25 C -0.148 4.148 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.067 0.933 37 H -0.004 1.004 38 H -0.004 1.004 39 H 0.265 0.735 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.072 0.928 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.123 4.558 5.295 28.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.082 0.918 4 C -0.144 4.144 5 C -0.148 4.148 6 C -0.091 4.091 7 H 0.145 0.855 8 C 0.301 3.699 9 O -0.435 6.435 10 O -0.272 6.272 11 C 0.003 3.997 12 C -0.130 4.130 13 C -0.012 4.012 14 C -0.580 4.580 15 H 0.084 0.916 16 C -0.200 4.200 17 N -0.575 5.575 18 Si 0.795 3.205 19 H -0.183 1.183 20 H -0.204 1.204 21 H -0.204 1.204 22 C -0.134 4.134 23 C -0.098 4.098 24 H 0.101 0.899 25 C -0.205 4.205 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.014 0.986 38 H 0.014 0.986 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -26.740 4.732 5.586 27.724 hybrid contribution 1.441 -0.147 -0.241 1.468 sum -25.299 4.584 5.346 26.261 Atomic orbital electron populations 1.21857 0.93961 1.02340 1.02129 1.21213 0.96456 0.99244 0.93910 0.91801 1.21583 0.92488 1.01989 0.98322 1.21547 0.97782 1.00099 0.95349 1.21262 0.83677 1.04596 0.99528 0.85489 1.24704 0.93159 0.73546 0.78533 1.90634 1.71658 1.43757 1.37450 1.86496 1.22412 1.71186 1.47112 1.23117 0.75387 1.01064 1.00154 1.21447 0.95812 1.00226 0.95513 1.18942 0.90390 0.95646 0.96217 1.21649 0.92236 1.36411 1.07674 0.91608 1.26039 0.97772 0.96349 0.99889 1.70113 1.03932 1.46635 1.36802 0.85313 0.78438 0.78085 0.78700 1.18294 1.20369 1.20360 1.21509 0.96536 1.00201 0.95116 1.21150 0.92358 1.00789 0.95505 0.89910 1.21873 1.01841 1.00147 0.96671 0.91997 0.92382 0.92115 0.90427 0.90397 0.92300 0.90507 0.92243 0.92159 0.91419 0.91422 0.98595 0.98576 0.92661 0.91997 0.92482 0.93136 0.90874 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.84 71.98 0.64 -0.70 16 2 C -0.09 -1.08 2.25 -10.80 -0.02 -1.10 16 3 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.11 -1.32 5.20 30.59 0.16 -1.16 16 5 C -0.11 -1.95 5.14 30.59 0.16 -1.79 16 6 C -0.07 -1.48 2.63 -11.54 -0.03 -1.51 16 7 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 8 C 0.46 14.02 7.26 71.23 0.52 14.54 16 9 O -0.54 -20.29 15.73 21.97 0.35 -19.94 16 10 O -0.36 -11.97 10.12 -51.44 -0.52 -12.49 16 11 C 0.08 2.94 5.47 71.98 0.39 3.33 16 12 C -0.09 -3.91 5.53 30.59 0.17 -3.74 16 13 C 0.03 1.35 4.97 29.85 0.15 1.50 16 14 C -0.54 -30.92 9.11 25.60 0.23 -30.69 16 15 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16 16 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 17 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 18 Si 0.97 44.22 29.54 68.60 2.03 46.25 16 19 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 C -0.10 -1.84 3.78 30.61 0.12 -1.73 16 23 C -0.08 -1.06 2.25 -10.78 -0.02 -1.08 16 24 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 25 C -0.15 -1.79 8.84 71.98 0.64 -1.16 16 26 H 0.06 0.52 6.43 -2.39 -0.02 0.51 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.42 8.11 -2.38 -0.02 1.40 16 33 H 0.06 2.34 8.13 -2.38 -0.02 2.33 16 34 H 0.06 2.37 8.13 -2.39 -0.02 2.35 16 35 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 36 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 38 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 40 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 41 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 42 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 43 H 0.07 0.69 6.43 -2.39 -0.02 0.67 16 44 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -67.01 350.20 6.61 -60.39 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 0.93 Total: 7.85 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: 3.55 Total: -24.97 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.28 Total: -57.08 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -0.18 Total: -32.44 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -67.01 6.61 -60.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835160351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.525 kcal (2) G-P(sol) polarization free energy of solvation -67.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds