Wall clock time and date at job start Mon Mar 30 2020 01:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46733 * 2 1 4 4 C 1.53000 * 109.47233 * 240.00658 * 2 1 3 5 5 C 1.52997 * 109.47060 * 299.99657 * 4 2 1 6 6 C 1.53006 * 109.47127 * 300.00449 * 5 4 2 7 7 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 8 8 C 1.50703 * 109.47126 * 179.97438 * 6 5 4 9 9 O 1.20824 * 120.00141 * 239.99686 * 8 6 5 10 10 O 1.34229 * 119.99682 * 59.99713 * 8 6 5 11 11 C 1.45203 * 116.99579 * 179.97438 * 10 8 6 12 12 C 1.53006 * 109.46837 * 180.02562 * 11 10 8 13 13 C 1.53007 * 109.46857 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.46824 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00424 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99782 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00047 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99885 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47197 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47051 * 120.00254 * 18 16 14 21 21 H 1.48502 * 109.47002 * 240.00031 * 18 16 14 22 22 C 1.52997 * 109.47164 * 59.99836 * 6 5 4 23 23 C 1.52996 * 109.47346 * 120.00200 * 2 1 3 24 24 H 1.09004 * 109.47108 * 300.00289 * 23 2 1 25 25 C 1.52993 * 109.47473 * 180.02562 * 23 2 1 26 26 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47662 * 299.99768 * 1 2 3 28 28 H 1.09002 * 109.47075 * 60.00274 * 1 2 3 29 29 H 1.09002 * 109.47398 * 59.99826 * 4 2 1 30 30 H 1.09001 * 109.47194 * 180.02562 * 4 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 32 32 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 33 33 H 1.09003 * 109.47120 * 299.99507 * 11 10 8 34 34 H 1.09000 * 109.47246 * 60.00167 * 11 10 8 35 35 H 1.08993 * 109.47437 * 299.99801 * 12 11 10 36 36 H 1.09000 * 109.47218 * 59.99963 * 12 11 10 37 37 H 1.08993 * 109.47204 * 300.00273 * 13 12 11 38 38 H 1.09000 * 109.46967 * 60.00139 * 13 12 11 39 39 H 0.96999 * 120.00252 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.47045 * 180.02562 * 22 6 5 41 41 H 1.09001 * 109.47375 * 59.99966 * 22 6 5 42 42 H 1.09004 * 109.46998 * 59.99561 * 25 23 2 43 43 H 1.09002 * 109.47722 * 180.02562 * 25 23 2 44 44 H 1.09004 * 109.46862 * 300.00038 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.5301 -2.1636 -1.2494 6 6 2.0401 -2.8849 -0.0002 7 1 3.1301 -2.8849 -0.0001 8 6 1.5373 -4.3056 0.0000 9 8 0.8428 -4.7005 0.9064 10 8 1.8612 -5.1322 -1.0067 11 6 1.3421 -6.4867 -0.9404 12 6 1.8136 -7.2741 -2.1646 13 6 1.2671 -8.7015 -2.0944 14 6 1.7311 -9.4768 -3.3005 15 1 2.3538 -8.9994 -4.0426 16 6 1.3614 -10.7960 -3.4560 17 7 0.6036 -11.3774 -2.5521 18 14 1.9371 -11.7573 -4.9507 19 1 2.7726 -10.8814 -5.8108 20 1 2.7389 -12.9264 -4.5086 21 1 0.7578 -12.2284 -5.7205 22 6 1.5301 -2.1638 1.2491 23 6 2.0401 -0.7213 1.2492 24 1 1.6767 -0.2075 2.1392 25 6 3.5700 -0.7207 1.2495 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6767 -0.2072 -2.1393 30 1 3.1301 -0.7215 -1.2491 31 1 0.4402 -2.1637 -1.2494 32 1 1.8938 -2.6776 -2.1392 33 1 1.7064 -6.9715 -0.0346 34 1 0.2526 -6.4578 -0.9240 35 1 1.4497 -6.7895 -3.0706 36 1 2.9031 -7.3029 -2.1805 37 1 1.6314 -9.1858 -1.1885 38 1 0.1776 -8.6730 -2.0783 39 1 0.3432 -12.3054 -2.6616 40 1 1.8938 -2.6774 2.1391 41 1 0.4400 -2.1638 1.2491 42 1 3.9330 0.3071 1.2497 43 1 3.9334 -1.2350 2.1392 44 1 3.9337 -1.2343 0.3595 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835160352.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:57 Heat of formation + Delta-G solvation = -136.264624 kcal Electronic energy + Delta-G solvation = -20759.320607 eV Core-core repulsion = 17674.822483 eV Total energy + Delta-G solvation = -3084.498125 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.80622 -39.20605 -36.38690 -33.99124 -32.69830 -32.16505 -31.59636 -28.89048 -27.19611 -25.41122 -23.96181 -22.86712 -22.31645 -20.53773 -20.21782 -18.25228 -17.41922 -16.75690 -16.28366 -16.11884 -15.51657 -15.02064 -14.46939 -14.29035 -14.09458 -13.84508 -13.22511 -13.12183 -12.83311 -12.60611 -12.38501 -12.14285 -12.01518 -11.88167 -11.83201 -11.55248 -11.30893 -11.17201 -10.97959 -10.66151 -10.63234 -10.56758 -10.38061 -10.31845 -10.18704 -10.06226 -9.70791 -9.47407 -9.14244 -8.39011 -6.03459 -4.06424 2.39710 2.94432 3.30056 3.37457 3.41896 4.31754 4.39639 4.42479 4.46024 4.81118 4.83098 4.96319 4.98624 5.10180 5.14179 5.22495 5.32564 5.36278 5.39987 5.54495 5.57494 5.59855 5.63034 5.66283 5.68387 5.77765 5.82000 5.86873 5.95547 6.02405 6.04149 6.06731 6.17454 6.29116 6.55354 6.55543 6.88247 7.00296 7.60943 7.71882 7.94931 8.00121 8.36422 9.00160 9.57907 11.08062 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.040631 B = 0.002960 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.960503 B = 9456.682036 C = 9633.221278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.089 4.089 3 H 0.070 0.930 4 C -0.114 4.114 5 C -0.114 4.114 6 C -0.080 4.080 7 H 0.108 0.892 8 C 0.458 3.542 9 O -0.513 6.513 10 O -0.357 6.357 11 C 0.067 3.933 12 C -0.108 4.108 13 C 0.023 3.977 14 C -0.521 4.521 15 H 0.058 0.942 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.101 4.101 23 C -0.085 4.085 24 H 0.074 0.926 25 C -0.155 4.155 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.320 24.631 5.989 25.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.107 4.107 3 H 0.088 0.912 4 C -0.152 4.152 5 C -0.151 4.151 6 C -0.099 4.099 7 H 0.126 0.874 8 C 0.301 3.699 9 O -0.402 6.402 10 O -0.274 6.274 11 C -0.006 4.006 12 C -0.146 4.146 13 C -0.014 4.014 14 C -0.559 4.559 15 H 0.076 0.924 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.138 4.138 23 C -0.104 4.104 24 H 0.092 0.908 25 C -0.212 4.212 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.022 24.296 6.281 25.276 hybrid contribution 0.143 -0.850 -0.628 1.067 sum 3.165 23.446 5.653 24.325 Atomic orbital electron populations 1.21968 0.95276 1.02396 1.01473 1.21158 0.95864 0.99007 0.94680 0.91165 1.21610 1.01030 0.94835 0.97688 1.21566 1.01602 0.95582 0.96384 1.21110 1.02718 0.87772 0.98289 0.87447 1.23708 0.77768 0.88685 0.79722 1.90643 1.35776 1.77434 1.36349 1.86499 1.69603 1.25026 1.46246 1.23484 0.98786 0.76867 1.01434 1.21755 1.01097 0.97447 0.94300 1.19057 0.96533 0.88073 0.97710 1.21215 1.31646 0.96113 1.06906 0.92375 1.25037 0.95126 0.97804 0.96552 1.69975 1.36274 1.12536 1.34588 0.86492 0.78522 0.79932 0.82808 1.19655 1.20975 1.20968 1.21509 1.01823 0.94391 0.96119 1.21139 0.95810 0.95355 0.98082 0.90802 1.21983 0.95234 1.01741 1.02220 0.91883 0.92833 0.92750 0.91467 0.91279 0.91090 0.90294 0.91642 0.91634 0.92181 0.92192 0.96256 0.96257 0.92949 0.91097 0.90639 0.92690 0.92595 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.50 37.16 0.32 -0.82 16 2 C -0.09 -0.63 2.72 -90.62 -0.25 -0.87 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 4 C -0.11 -0.85 5.18 -26.73 -0.14 -0.99 16 5 C -0.11 -1.09 4.86 -26.73 -0.13 -1.22 16 6 C -0.08 -0.87 2.36 -91.77 -0.22 -1.09 16 7 H 0.11 1.05 6.43 -51.93 -0.33 0.71 16 8 C 0.46 7.09 7.25 36.01 0.26 7.35 16 9 O -0.51 -9.36 15.73 -18.75 -0.29 -9.66 16 10 O -0.36 -6.09 10.12 -39.25 -0.40 -6.49 16 11 C 0.07 1.28 5.47 37.16 0.20 1.48 16 12 C -0.11 -2.29 5.53 -26.72 -0.15 -2.43 16 13 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 14 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 18 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.10 -1.00 3.75 -26.73 -0.10 -1.10 16 23 C -0.09 -0.65 2.72 -90.62 -0.25 -0.89 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 25 C -0.15 -1.07 8.50 37.15 0.32 -0.75 16 26 H 0.06 0.54 4.81 -51.93 -0.25 0.29 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.48 6.43 -51.93 -0.33 0.14 16 31 H 0.07 0.71 6.43 -51.93 -0.33 0.38 16 32 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16 33 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 34 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 41 H 0.08 0.82 6.39 -51.93 -0.33 0.48 16 42 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.43 4.81 -51.93 -0.25 0.19 16 LS Contribution 339.76 15.07 5.12 5.12 Total: -1.00 -31.07 339.76 -8.25 -39.32 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -7.71 Total: -4.20 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -0.68 Total: -14.45 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 0.74 Total: -26.26 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.69 Total: -16.14 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.07 -8.25 -39.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835160352.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.949 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds