Wall clock time and date at job start Mon Mar 30 2020 01:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46733 * 2 1 4 4 C 1.53000 * 109.47233 * 240.00658 * 2 1 3 5 5 C 1.52997 * 109.47060 * 299.99657 * 4 2 1 6 6 C 1.53006 * 109.47127 * 300.00449 * 5 4 2 7 7 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 8 8 C 1.50703 * 109.47126 * 179.97438 * 6 5 4 9 9 O 1.20824 * 120.00141 * 239.99686 * 8 6 5 10 10 O 1.34229 * 119.99682 * 59.99713 * 8 6 5 11 11 C 1.45203 * 116.99579 * 179.97438 * 10 8 6 12 12 C 1.53006 * 109.46837 * 180.02562 * 11 10 8 13 13 C 1.53007 * 109.46857 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.46824 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00424 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99782 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00047 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99885 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47197 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47051 * 120.00254 * 18 16 14 21 21 H 1.48502 * 109.47002 * 240.00031 * 18 16 14 22 22 C 1.52997 * 109.47164 * 59.99836 * 6 5 4 23 23 C 1.52996 * 109.47346 * 120.00200 * 2 1 3 24 24 H 1.09004 * 109.47108 * 300.00289 * 23 2 1 25 25 C 1.52993 * 109.47473 * 180.02562 * 23 2 1 26 26 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47662 * 299.99768 * 1 2 3 28 28 H 1.09002 * 109.47075 * 60.00274 * 1 2 3 29 29 H 1.09002 * 109.47398 * 59.99826 * 4 2 1 30 30 H 1.09001 * 109.47194 * 180.02562 * 4 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 32 32 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 33 33 H 1.09003 * 109.47120 * 299.99507 * 11 10 8 34 34 H 1.09000 * 109.47246 * 60.00167 * 11 10 8 35 35 H 1.08993 * 109.47437 * 299.99801 * 12 11 10 36 36 H 1.09000 * 109.47218 * 59.99963 * 12 11 10 37 37 H 1.08993 * 109.47204 * 300.00273 * 13 12 11 38 38 H 1.09000 * 109.46967 * 60.00139 * 13 12 11 39 39 H 0.96999 * 120.00252 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.47045 * 180.02562 * 22 6 5 41 41 H 1.09001 * 109.47375 * 59.99966 * 22 6 5 42 42 H 1.09004 * 109.46998 * 59.99561 * 25 23 2 43 43 H 1.09002 * 109.47722 * 180.02562 * 25 23 2 44 44 H 1.09004 * 109.46862 * 300.00038 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.5301 -2.1636 -1.2494 6 6 2.0401 -2.8849 -0.0002 7 1 3.1301 -2.8849 -0.0001 8 6 1.5373 -4.3056 0.0000 9 8 0.8428 -4.7005 0.9064 10 8 1.8612 -5.1322 -1.0067 11 6 1.3421 -6.4867 -0.9404 12 6 1.8136 -7.2741 -2.1646 13 6 1.2671 -8.7015 -2.0944 14 6 1.7311 -9.4768 -3.3005 15 1 2.3538 -8.9994 -4.0426 16 6 1.3614 -10.7960 -3.4560 17 7 0.6036 -11.3774 -2.5521 18 14 1.9371 -11.7573 -4.9507 19 1 2.7726 -10.8814 -5.8108 20 1 2.7389 -12.9264 -4.5086 21 1 0.7578 -12.2284 -5.7205 22 6 1.5301 -2.1638 1.2491 23 6 2.0401 -0.7213 1.2492 24 1 1.6767 -0.2075 2.1392 25 6 3.5700 -0.7207 1.2495 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6767 -0.2072 -2.1393 30 1 3.1301 -0.7215 -1.2491 31 1 0.4402 -2.1637 -1.2494 32 1 1.8938 -2.6776 -2.1392 33 1 1.7064 -6.9715 -0.0346 34 1 0.2526 -6.4578 -0.9240 35 1 1.4497 -6.7895 -3.0706 36 1 2.9031 -7.3029 -2.1805 37 1 1.6314 -9.1858 -1.1885 38 1 0.1776 -8.6730 -2.0783 39 1 0.3432 -12.3054 -2.6616 40 1 1.8938 -2.6774 2.1391 41 1 0.4400 -2.1638 1.2491 42 1 3.9330 0.3071 1.2497 43 1 3.9334 -1.2350 2.1392 44 1 3.9337 -1.2343 0.3595 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835160352.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:56 Heat of formation + Delta-G solvation = -151.539949 kcal Electronic energy + Delta-G solvation = -20759.982995 eV Core-core repulsion = 17674.822483 eV Total energy + Delta-G solvation = -3085.160513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.92410 -40.15026 -37.81707 -35.95639 -33.87627 -33.26435 -32.80305 -29.55500 -29.05008 -26.36221 -25.25772 -24.20772 -23.01059 -22.19236 -21.57205 -19.06709 -18.68381 -18.44794 -17.62775 -17.58135 -16.52468 -16.45902 -15.77849 -15.53471 -15.08409 -14.64678 -14.48354 -14.12368 -14.01267 -13.84780 -13.64688 -13.42519 -13.32493 -12.99680 -12.85392 -12.54490 -12.50457 -12.39697 -12.18868 -12.10156 -11.97845 -11.80851 -11.76102 -11.46463 -11.43901 -11.26237 -11.00850 -10.92554 -10.80717 -10.59486 -8.23105 -6.34887 1.12992 1.40930 1.41274 1.54851 1.66009 2.40643 3.10809 3.46925 3.63675 3.70011 3.96356 4.03033 4.05286 4.14169 4.16826 4.28934 4.35039 4.38532 4.43508 4.56899 4.69655 4.76928 4.78970 4.85708 4.92418 4.98873 5.02498 5.05631 5.06080 5.13295 5.17606 5.21401 5.34246 5.39744 5.42609 5.44630 5.51025 5.56348 5.61307 5.67980 5.78456 6.17496 6.68139 6.81343 7.34847 8.89446 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.040631 B = 0.002960 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.960503 B = 9456.682036 C = 9633.221278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.086 4.086 3 H 0.088 0.912 4 C -0.109 4.109 5 C -0.112 4.112 6 C -0.072 4.072 7 H 0.126 0.874 8 C 0.455 3.545 9 O -0.545 6.545 10 O -0.356 6.356 11 C 0.076 3.924 12 C -0.093 4.093 13 C 0.026 3.974 14 C -0.542 4.542 15 H 0.066 0.934 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.970 3.030 19 H -0.259 1.259 20 H -0.278 1.278 21 H -0.278 1.278 22 C -0.099 4.099 23 C -0.080 4.080 24 H 0.081 0.919 25 C -0.154 4.154 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.067 0.933 37 H -0.004 1.004 38 H -0.004 1.004 39 H 0.265 0.735 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.052 0.948 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.719 26.484 4.846 27.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.104 4.104 3 H 0.106 0.894 4 C -0.147 4.147 5 C -0.150 4.150 6 C -0.091 4.091 7 H 0.144 0.856 8 C 0.300 3.700 9 O -0.435 6.435 10 O -0.272 6.272 11 C 0.003 3.997 12 C -0.130 4.130 13 C -0.012 4.012 14 C -0.580 4.580 15 H 0.084 0.916 16 C -0.200 4.200 17 N -0.574 5.574 18 Si 0.794 3.206 19 H -0.183 1.183 20 H -0.204 1.204 21 H -0.204 1.204 22 C -0.136 4.136 23 C -0.098 4.098 24 H 0.099 0.901 25 C -0.211 4.211 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.014 0.986 38 H 0.014 0.986 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.430 26.176 5.137 27.041 hybrid contribution -0.334 -1.399 -0.206 1.453 sum 4.096 24.777 4.931 25.593 Atomic orbital electron populations 1.21970 0.95757 1.01442 1.02032 1.21169 0.95430 0.99763 0.94055 0.89403 1.21610 1.01691 0.93012 0.98355 1.21584 1.01157 0.97051 0.95204 1.21284 1.03604 0.84568 0.99619 0.85613 1.24743 0.76909 0.89829 0.78541 1.90631 1.37303 1.78153 1.37397 1.86496 1.69568 1.24050 1.47118 1.23115 0.98339 0.78120 1.00150 1.21449 1.01206 0.94836 0.95520 1.18940 0.95084 0.90939 0.96205 1.21650 1.31838 0.96864 1.07680 0.91605 1.26033 0.95063 0.99035 0.99867 1.70108 1.37475 1.13093 1.36769 0.85319 0.78229 0.78300 0.78721 1.18276 1.20375 1.20362 1.21507 1.01060 0.95999 0.95065 1.21121 0.96450 0.93415 0.98832 0.90115 1.21986 0.94363 1.02672 1.02125 0.93579 0.92397 0.92132 0.90406 0.90128 0.91941 0.90717 0.92189 0.92236 0.91425 0.91427 0.98582 0.98596 0.92660 0.92209 0.91959 0.91256 0.92893 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.50 71.98 0.61 -1.43 16 2 C -0.09 -0.99 2.72 -10.79 -0.03 -1.02 16 3 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 4 C -0.11 -1.33 5.18 30.59 0.16 -1.18 16 5 C -0.11 -2.00 4.86 30.60 0.15 -1.85 16 6 C -0.07 -1.50 2.36 -11.54 -0.03 -1.53 16 7 H 0.13 2.20 6.43 -2.39 -0.02 2.19 16 8 C 0.45 14.08 7.25 71.24 0.52 14.59 16 9 O -0.54 -20.31 15.73 21.97 0.35 -19.97 16 10 O -0.36 -12.04 10.12 -51.41 -0.52 -12.56 16 11 C 0.08 2.95 5.47 71.98 0.39 3.34 16 12 C -0.09 -3.92 5.53 30.60 0.17 -3.75 16 13 C 0.03 1.37 4.97 29.85 0.15 1.51 16 14 C -0.54 -30.97 9.11 25.60 0.23 -30.74 16 15 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 16 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 17 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 18 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 19 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 C -0.10 -1.90 3.75 30.59 0.11 -1.78 16 23 C -0.08 -1.04 2.72 -10.80 -0.03 -1.07 16 24 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 25 C -0.15 -1.72 8.50 71.98 0.61 -1.11 16 26 H 0.05 0.77 4.81 -2.39 -0.01 0.75 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.84 6.43 -2.39 -0.02 0.82 16 31 H 0.06 1.22 6.43 -2.39 -0.02 1.21 16 32 H 0.07 1.40 8.11 -2.39 -0.02 1.38 16 33 H 0.06 2.37 8.13 -2.39 -0.02 2.35 16 34 H 0.06 2.35 8.13 -2.39 -0.02 2.33 16 35 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 38 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 39 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 40 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 41 H 0.06 1.36 6.39 -2.39 -0.02 1.34 16 42 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.06 0.69 4.81 -2.38 -0.01 0.68 16 Total: -1.00 -67.02 339.76 6.57 -60.45 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 0.95 Total: 8.56 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 3.48 Total: -25.68 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 0.28 Total: -57.03 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -0.17 Total: -32.53 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -67.02 6.57 -60.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835160352.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.091 kcal (2) G-P(sol) polarization free energy of solvation -67.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds