Wall clock time and date at job start Mon Mar 30 2020 00:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47114 * 2 1 4 4 H 1.08996 * 109.47222 * 301.62366 * 3 2 1 5 5 C 1.53000 * 109.47362 * 181.62011 * 3 2 1 6 6 C 1.53003 * 109.46803 * 65.00079 * 5 3 2 7 7 C 1.52994 * 109.47398 * 65.00142 * 6 5 3 8 8 C 1.53005 * 109.47123 * 185.00226 * 6 5 3 9 9 C 1.50696 * 109.46927 * 61.62174 * 3 2 1 10 10 O 1.20824 * 120.00055 * 87.20548 * 9 3 2 11 11 O 1.34234 * 120.00029 * 266.92290 * 9 3 2 12 12 C 1.45199 * 116.99960 * 175.68287 * 11 9 3 13 13 C 1.52997 * 109.46793 * 184.54665 * 12 11 9 14 14 C 1.50698 * 115.55179 * 302.04043 * 13 12 11 15 15 H 1.08004 * 120.00036 * 145.74395 * 14 13 12 16 16 C 1.37870 * 119.99896 * 325.74108 * 14 13 12 17 17 N 1.31519 * 120.00365 * 345.00143 * 16 14 13 18 18 Si 1.86803 * 120.00023 * 164.99929 * 16 14 13 19 19 H 1.48503 * 109.46876 * 60.00224 * 18 16 14 20 20 H 1.48493 * 109.47528 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47115 * 300.00228 * 18 16 14 22 22 C 1.53003 * 117.49709 * 156.37046 * 13 12 11 23 23 C 1.53004 * 117.49766 * 87.71392 * 13 12 11 24 24 H 1.09001 * 109.46729 * 177.26918 * 1 2 3 25 25 H 1.09001 * 109.46797 * 297.26343 * 1 2 3 26 26 H 1.08997 * 109.47175 * 57.26830 * 1 2 3 27 27 H 1.09004 * 109.46909 * 240.00414 * 2 1 3 28 28 H 1.08994 * 109.47592 * 120.00114 * 2 1 3 29 29 H 1.08999 * 109.47298 * 184.99998 * 5 3 2 30 30 H 1.08999 * 109.47095 * 305.00539 * 5 3 2 31 31 H 1.08999 * 109.47421 * 304.99636 * 6 5 3 32 32 H 1.08998 * 109.47076 * 300.00281 * 7 6 5 33 33 H 1.09007 * 109.46974 * 59.99487 * 7 6 5 34 34 H 1.09001 * 109.47371 * 179.97438 * 7 6 5 35 35 H 1.09006 * 109.47216 * 59.99602 * 8 6 5 36 36 H 1.08993 * 109.47159 * 180.02562 * 8 6 5 37 37 H 1.09007 * 109.46709 * 300.00182 * 8 6 5 38 38 H 1.09003 * 109.47419 * 304.54752 * 12 11 9 39 39 H 1.08999 * 109.46918 * 64.54994 * 12 11 9 40 40 H 0.96992 * 120.00125 * 185.03650 * 17 16 14 41 41 H 1.09000 * 117.49823 * 359.97438 * 22 13 12 42 42 H 1.08997 * 117.50068 * 145.02342 * 22 13 12 43 43 H 1.09001 * 117.49628 * 214.97313 * 23 13 12 44 44 H 1.08992 * 117.49887 * 359.97250 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6531 1.9647 -0.8750 5 6 3.5695 1.4428 -0.0408 6 6 4.0443 0.8456 -1.3670 7 6 3.6086 1.7522 -2.5197 8 6 5.5700 0.7305 -1.3573 9 6 1.5708 2.1412 1.2501 10 8 2.2259 2.0721 2.2629 11 8 0.4278 2.8449 1.2368 12 6 -0.0126 3.4109 2.4994 13 6 -1.3782 4.0748 2.3119 14 6 -1.4343 5.1634 1.2714 15 1 -2.3287 5.3014 0.6819 16 6 -0.3440 5.9833 1.0721 17 7 0.6215 6.0221 1.9642 18 14 -0.2379 7.0392 -0.4653 19 1 -1.3970 7.9665 -0.5098 20 1 1.0230 7.8230 -0.4416 21 1 -0.2554 6.1669 -1.6671 22 6 -2.2616 4.2354 3.5507 23 6 -2.6198 3.1974 2.4842 24 1 -0.3633 -1.0265 -0.0490 25 1 -0.3633 0.4708 0.9135 26 1 -0.3633 0.5556 -0.8645 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.9352 2.4657 0.0487 30 1 3.9550 0.8454 0.7854 31 1 3.6063 -0.1440 -1.4975 32 1 2.5217 1.8342 -2.5266 33 1 4.0467 2.7418 -2.3892 34 1 3.9472 1.3270 -3.4645 35 1 5.8805 0.0846 -0.5360 36 1 5.9083 0.3055 -2.3023 37 1 6.0081 1.7201 -1.2268 38 1 -0.0927 2.6191 3.2442 39 1 0.7098 4.1545 2.8358 40 1 1.3523 6.6515 1.8610 41 1 -1.8701 3.8676 4.4992 42 1 -2.8837 5.1282 3.6130 43 1 -3.4774 3.4080 1.8452 44 1 -2.4637 2.1473 2.7306 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835188998.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:05 Heat of formation + Delta-G solvation = -94.891495 kcal Electronic energy + Delta-G solvation = -21814.472012 eV Core-core repulsion = 18731.767961 eV Total energy + Delta-G solvation = -3082.704051 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.86502 -37.45130 -36.47025 -34.93609 -33.74003 -32.17002 -29.29890 -27.18383 -26.75146 -25.41938 -24.13763 -22.60525 -21.23175 -20.16636 -19.17433 -18.94942 -16.99051 -16.56326 -15.67145 -15.29409 -15.12687 -14.64763 -14.03254 -13.96746 -13.69646 -13.46311 -13.09979 -12.93327 -12.59953 -12.21389 -11.97723 -11.77160 -11.68389 -11.50874 -11.38367 -11.16132 -10.93237 -10.85034 -10.80795 -10.62761 -10.50926 -10.40748 -10.34208 -10.31572 -9.78503 -9.45819 -9.28003 -9.12894 -8.75659 -8.07947 -6.05877 -4.07459 3.02223 3.28378 3.34251 3.37549 3.57464 4.36543 4.73955 4.82100 4.90422 4.99289 5.10468 5.19372 5.28191 5.48962 5.53881 5.60388 5.63745 5.69719 5.77418 5.81146 5.86429 5.93098 6.03083 6.06854 6.07318 6.10817 6.20430 6.21742 6.27147 6.42003 6.44816 6.47391 6.52750 6.64922 6.66499 6.83685 6.99742 7.26815 7.44308 7.61818 7.91608 8.35735 8.71085 8.86970 9.51061 10.96005 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.016560 B = 0.006520 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.456409 B = 4293.649254 C = 5167.966788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.111 4.111 3 C -0.085 4.085 4 H 0.102 0.898 5 C -0.101 4.101 6 C -0.097 4.097 7 C -0.153 4.153 8 C -0.146 4.146 9 C 0.459 3.541 10 O -0.528 6.528 11 O -0.326 6.326 12 C 0.108 3.892 13 C 0.051 3.949 14 C -0.485 4.485 15 H 0.062 0.938 16 C 0.076 3.924 17 N -0.880 5.880 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.273 1.273 22 C -0.194 4.194 23 C -0.208 4.208 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.025 0.975 39 H 0.116 0.884 40 H 0.264 0.736 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.086 -10.665 -6.482 13.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.149 4.149 3 C -0.104 4.104 4 H 0.120 0.880 5 C -0.138 4.138 6 C -0.115 4.115 7 C -0.210 4.210 8 C -0.204 4.204 9 C 0.302 3.698 10 O -0.419 6.419 11 O -0.240 6.240 12 C 0.035 3.965 13 C 0.050 3.950 14 C -0.522 4.522 15 H 0.080 0.920 16 C -0.128 4.128 17 N -0.517 5.517 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.232 4.232 23 C -0.246 4.246 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.043 0.957 39 H 0.133 0.867 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.463 -10.582 -6.162 13.409 hybrid contribution 0.019 0.698 -0.498 0.857 sum 5.483 -9.884 -6.659 13.119 Atomic orbital electron populations 1.21846 0.94907 1.01358 1.03335 1.21531 0.96712 0.93878 1.02737 1.21126 0.96860 0.96684 0.95745 0.88015 1.21546 0.92481 1.02309 0.97509 1.21168 0.95918 0.99606 0.94808 1.21941 1.01848 0.99757 0.97502 1.21828 0.95328 1.01857 1.01345 1.23415 0.79846 0.76556 0.89935 1.90567 1.56132 1.60116 1.35101 1.86510 1.37515 1.60843 1.39158 1.22867 0.98550 0.95075 0.79962 1.18867 0.85552 0.95204 0.95373 1.20361 0.99720 1.14181 1.17904 0.91990 1.24929 0.95154 0.96594 0.96075 1.69771 1.12341 1.35880 1.33720 0.86639 0.77358 0.79955 0.84014 1.20227 1.21260 1.19868 1.22971 1.06824 1.00034 0.93368 1.22930 1.02702 0.94579 1.04347 0.92800 0.92121 0.91908 0.90495 0.91556 0.91371 0.90787 0.90812 0.92080 0.92552 0.92908 0.92709 0.92849 0.92658 0.95674 0.86664 0.92599 0.91560 0.89806 0.90354 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.57 37.16 0.36 -1.80 16 2 C -0.11 -1.45 5.23 -26.73 -0.14 -1.59 16 3 C -0.08 -1.33 2.20 -91.77 -0.20 -1.54 16 4 H 0.10 1.58 6.34 -51.93 -0.33 1.25 16 5 C -0.10 -1.41 3.70 -26.73 -0.10 -1.51 16 6 C -0.10 -1.05 2.78 -90.62 -0.25 -1.31 16 7 C -0.15 -1.67 8.95 37.15 0.33 -1.34 16 8 C -0.15 -1.43 9.19 37.16 0.34 -1.08 16 9 C 0.46 9.65 6.04 36.00 0.22 9.86 16 10 O -0.53 -12.31 16.06 -18.75 -0.30 -12.61 16 11 O -0.33 -7.73 9.43 -39.27 -0.37 -8.10 16 12 C 0.11 2.72 4.65 37.16 0.17 2.89 16 13 C 0.05 1.27 2.09 -155.66 -0.32 0.95 16 14 C -0.48 -13.20 8.84 -34.44 -0.30 -13.50 16 15 H 0.06 1.67 7.86 -52.48 -0.41 1.26 16 16 C 0.08 2.06 5.19 -17.82 -0.09 1.97 16 17 N -0.88 -24.74 10.84 55.43 0.60 -24.14 16 18 Si 0.89 21.04 29.57 -169.99 -5.03 16.02 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 C -0.19 -4.40 9.95 -26.69 -0.27 -4.66 16 23 C -0.21 -4.55 9.94 -26.69 -0.27 -4.81 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.99 6.95 -51.93 -0.36 0.63 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.08 0.81 6.39 -51.93 -0.33 0.47 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 1.06 8.02 -51.93 -0.42 0.64 16 31 H 0.07 0.73 6.31 -51.93 -0.33 0.40 16 32 H 0.06 0.69 6.46 -51.93 -0.34 0.36 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.02 0.60 8.06 -51.93 -0.42 0.18 16 39 H 0.12 3.22 5.86 -51.93 -0.30 2.92 16 40 H 0.26 7.14 8.32 -40.82 -0.34 6.80 16 41 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 42 H 0.08 1.89 8.14 -51.93 -0.42 1.46 16 43 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 351.96 15.07 5.30 5.30 Total: -1.00 -29.33 351.96 -8.19 -37.52 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -7.87 Total: 3.48 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -0.53 Total: -17.47 kcal Atomic # 7 Polarization: -24.74 SS G_CDS: 0.60 Total: -24.14 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.67 Total: -20.71 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.33 -8.19 -37.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835188998.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.372 kcal (2) G-P(sol) polarization free energy of solvation -29.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds