Wall clock time and date at job start Mon Mar 30 2020 00:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47114 * 2 1 4 4 H 1.08996 * 109.47222 * 301.62366 * 3 2 1 5 5 C 1.53000 * 109.47362 * 181.62011 * 3 2 1 6 6 C 1.53003 * 109.46803 * 65.00079 * 5 3 2 7 7 C 1.52994 * 109.47398 * 65.00142 * 6 5 3 8 8 C 1.53005 * 109.47123 * 185.00226 * 6 5 3 9 9 C 1.50696 * 109.46927 * 61.62174 * 3 2 1 10 10 O 1.20824 * 120.00055 * 87.20548 * 9 3 2 11 11 O 1.34234 * 120.00029 * 266.92290 * 9 3 2 12 12 C 1.45199 * 116.99960 * 175.68287 * 11 9 3 13 13 C 1.52997 * 109.46793 * 184.54665 * 12 11 9 14 14 C 1.50698 * 115.55179 * 302.04043 * 13 12 11 15 15 H 1.08004 * 120.00036 * 145.74395 * 14 13 12 16 16 C 1.37870 * 119.99896 * 325.74108 * 14 13 12 17 17 N 1.31519 * 120.00365 * 345.00143 * 16 14 13 18 18 Si 1.86803 * 120.00023 * 164.99929 * 16 14 13 19 19 H 1.48503 * 109.46876 * 60.00224 * 18 16 14 20 20 H 1.48493 * 109.47528 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47115 * 300.00228 * 18 16 14 22 22 C 1.53003 * 117.49709 * 156.37046 * 13 12 11 23 23 C 1.53004 * 117.49766 * 87.71392 * 13 12 11 24 24 H 1.09001 * 109.46729 * 177.26918 * 1 2 3 25 25 H 1.09001 * 109.46797 * 297.26343 * 1 2 3 26 26 H 1.08997 * 109.47175 * 57.26830 * 1 2 3 27 27 H 1.09004 * 109.46909 * 240.00414 * 2 1 3 28 28 H 1.08994 * 109.47592 * 120.00114 * 2 1 3 29 29 H 1.08999 * 109.47298 * 184.99998 * 5 3 2 30 30 H 1.08999 * 109.47095 * 305.00539 * 5 3 2 31 31 H 1.08999 * 109.47421 * 304.99636 * 6 5 3 32 32 H 1.08998 * 109.47076 * 300.00281 * 7 6 5 33 33 H 1.09007 * 109.46974 * 59.99487 * 7 6 5 34 34 H 1.09001 * 109.47371 * 179.97438 * 7 6 5 35 35 H 1.09006 * 109.47216 * 59.99602 * 8 6 5 36 36 H 1.08993 * 109.47159 * 180.02562 * 8 6 5 37 37 H 1.09007 * 109.46709 * 300.00182 * 8 6 5 38 38 H 1.09003 * 109.47419 * 304.54752 * 12 11 9 39 39 H 1.08999 * 109.46918 * 64.54994 * 12 11 9 40 40 H 0.96992 * 120.00125 * 185.03650 * 17 16 14 41 41 H 1.09000 * 117.49823 * 359.97438 * 22 13 12 42 42 H 1.08997 * 117.50068 * 145.02342 * 22 13 12 43 43 H 1.09001 * 117.49628 * 214.97313 * 23 13 12 44 44 H 1.08992 * 117.49887 * 359.97250 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6531 1.9647 -0.8750 5 6 3.5695 1.4428 -0.0408 6 6 4.0443 0.8456 -1.3670 7 6 3.6086 1.7522 -2.5197 8 6 5.5700 0.7305 -1.3573 9 6 1.5708 2.1412 1.2501 10 8 2.2259 2.0721 2.2629 11 8 0.4278 2.8449 1.2368 12 6 -0.0126 3.4109 2.4994 13 6 -1.3782 4.0748 2.3119 14 6 -1.4343 5.1634 1.2714 15 1 -2.3287 5.3014 0.6819 16 6 -0.3440 5.9833 1.0721 17 7 0.6215 6.0221 1.9642 18 14 -0.2379 7.0392 -0.4653 19 1 -1.3970 7.9665 -0.5098 20 1 1.0230 7.8230 -0.4416 21 1 -0.2554 6.1669 -1.6671 22 6 -2.2616 4.2354 3.5507 23 6 -2.6198 3.1974 2.4842 24 1 -0.3633 -1.0265 -0.0490 25 1 -0.3633 0.4708 0.9135 26 1 -0.3633 0.5556 -0.8645 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.9352 2.4657 0.0487 30 1 3.9550 0.8454 0.7854 31 1 3.6063 -0.1440 -1.4975 32 1 2.5217 1.8342 -2.5266 33 1 4.0467 2.7418 -2.3892 34 1 3.9472 1.3270 -3.4645 35 1 5.8805 0.0846 -0.5360 36 1 5.9083 0.3055 -2.3023 37 1 6.0081 1.7201 -1.2268 38 1 -0.0927 2.6191 3.2442 39 1 0.7098 4.1545 2.8358 40 1 1.3523 6.6515 1.8610 41 1 -1.8701 3.8676 4.4992 42 1 -2.8837 5.1282 3.6130 43 1 -3.4774 3.4080 1.8452 44 1 -2.4637 2.1473 2.7306 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835188998.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:04 Heat of formation + Delta-G solvation = -108.165976 kcal Electronic energy + Delta-G solvation = -21815.047637 eV Core-core repulsion = 18731.767961 eV Total energy + Delta-G solvation = -3083.279676 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.51910 -38.93886 -38.01506 -36.74719 -34.79938 -34.22126 -30.43844 -28.57980 -28.00139 -27.44725 -25.41013 -23.84304 -23.01484 -21.41947 -21.12718 -20.20186 -18.62490 -18.46442 -17.39719 -16.96209 -16.56732 -16.13094 -15.73326 -15.15351 -14.90760 -14.80686 -14.58114 -14.15403 -13.79309 -13.76322 -13.54819 -13.28900 -12.99378 -12.82503 -12.80607 -12.62758 -12.40350 -12.35551 -12.20624 -12.15281 -11.84876 -11.70086 -11.62896 -11.44405 -11.38221 -11.33302 -11.12103 -10.96279 -10.67234 -10.05330 -8.10877 -6.18714 1.35085 1.39753 1.43364 1.50027 1.97011 2.39981 2.98677 3.52908 3.61963 3.78514 3.82545 4.09973 4.12680 4.17821 4.23729 4.32564 4.38578 4.47046 4.56644 4.62772 4.71932 4.76471 4.77777 4.85516 4.89151 4.96681 4.98255 5.04150 5.07249 5.08340 5.13542 5.16664 5.23760 5.31088 5.39878 5.40210 5.48063 5.50248 5.53948 5.81993 5.85667 6.32331 6.76476 6.98954 7.42012 8.89271 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.016560 B = 0.006520 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.456409 B = 4293.649254 C = 5167.966788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.104 4.104 3 C -0.079 4.079 4 H 0.105 0.895 5 C -0.097 4.097 6 C -0.089 4.089 7 C -0.155 4.155 8 C -0.146 4.146 9 C 0.452 3.548 10 O -0.558 6.558 11 O -0.338 6.338 12 C 0.118 3.882 13 C 0.011 3.989 14 C -0.500 4.500 15 H 0.058 0.942 16 C 0.031 3.969 17 N -0.907 5.907 18 Si 0.948 3.052 19 H -0.268 1.268 20 H -0.287 1.287 21 H -0.268 1.268 22 C -0.189 4.189 23 C -0.182 4.182 24 H 0.080 0.920 25 H 0.027 0.973 26 H 0.062 0.938 27 H 0.115 0.885 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.028 0.972 39 H 0.082 0.918 40 H 0.261 0.739 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.948 -12.339 -8.380 15.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.141 4.141 3 C -0.098 4.098 4 H 0.123 0.877 5 C -0.135 4.135 6 C -0.107 4.107 7 C -0.212 4.212 8 C -0.203 4.203 9 C 0.297 3.703 10 O -0.451 6.451 11 O -0.253 6.253 12 C 0.045 3.955 13 C 0.011 3.989 14 C -0.537 4.537 15 H 0.076 0.924 16 C -0.169 4.169 17 N -0.545 5.545 18 Si 0.773 3.227 19 H -0.193 1.193 20 H -0.212 1.212 21 H -0.193 1.193 22 C -0.227 4.227 23 C -0.219 4.219 24 H 0.099 0.901 25 H 0.046 0.954 26 H 0.081 0.919 27 H 0.133 0.867 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.046 0.954 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.310 -12.262 -8.067 15.608 hybrid contribution 0.054 1.192 0.140 1.201 sum 5.364 -11.070 -7.926 14.634 Atomic orbital electron populations 1.21848 0.95307 1.02673 1.01566 1.21580 0.96277 0.91811 1.04463 1.21342 0.97912 0.97885 0.92679 0.87667 1.21556 0.91123 1.01193 0.99590 1.21155 0.96825 1.00171 0.92544 1.21965 1.01435 0.99316 0.98512 1.21828 0.94279 1.01627 1.02567 1.24597 0.78607 0.75650 0.91447 1.90539 1.56643 1.61115 1.36762 1.86525 1.38890 1.61402 1.38496 1.22535 0.97913 0.94263 0.80799 1.18997 0.86727 0.96498 0.96714 1.20614 0.99745 1.14804 1.18510 0.92372 1.25618 0.94909 0.97980 0.98418 1.69930 1.12796 1.36592 1.35220 0.85761 0.77442 0.78648 0.80814 1.19295 1.21240 1.19273 1.22974 1.05765 1.00523 0.93425 1.22935 1.00806 0.95116 1.03082 0.90126 0.95415 0.91926 0.86695 0.91728 0.93754 0.91299 0.88726 0.92624 0.93840 0.90764 0.92363 0.90920 0.93595 0.95354 0.90055 0.93004 0.90366 0.89937 0.89484 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 9.57 71.98 0.69 -3.31 16 2 C -0.10 -2.48 5.23 30.59 0.16 -2.32 16 3 C -0.08 -2.43 2.20 -11.54 -0.03 -2.46 16 4 H 0.11 3.17 6.34 -2.39 -0.02 3.15 16 5 C -0.10 -2.66 3.70 30.60 0.11 -2.54 16 6 C -0.09 -1.72 2.78 -10.79 -0.03 -1.75 16 7 C -0.16 -3.03 8.95 71.98 0.64 -2.39 16 8 C -0.15 -2.50 9.19 71.98 0.66 -1.84 16 9 C 0.45 19.39 6.04 71.23 0.43 19.82 16 10 O -0.56 -26.90 16.06 21.97 0.35 -26.55 16 11 O -0.34 -16.44 9.43 -51.46 -0.48 -16.93 16 12 C 0.12 6.11 4.65 71.98 0.33 6.44 16 13 C 0.01 0.56 2.09 -52.93 -0.11 0.45 16 14 C -0.50 -27.43 8.84 25.60 0.23 -27.20 16 15 H 0.06 3.14 7.86 -2.91 -0.02 3.12 16 16 C 0.03 1.70 5.19 84.65 0.44 2.14 16 17 N -0.91 -52.50 10.84 21.45 0.23 -52.27 16 18 Si 0.95 43.41 29.57 68.60 2.03 45.43 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 20 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 C -0.19 -8.47 9.95 30.62 0.30 -8.17 16 23 C -0.18 -7.73 9.94 30.62 0.30 -7.42 16 24 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.03 0.87 6.95 -2.39 -0.02 0.86 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.11 1.91 6.39 -2.38 -0.02 1.90 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.94 8.02 -2.39 -0.02 1.92 16 31 H 0.09 1.47 6.31 -2.39 -0.02 1.46 16 32 H 0.05 1.14 6.46 -2.39 -0.02 1.13 16 33 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.03 1.39 8.06 -2.39 -0.02 1.37 16 39 H 0.08 4.76 5.86 -2.39 -0.01 4.75 16 40 H 0.26 14.56 8.32 -92.71 -0.77 13.79 16 41 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 42 H 0.08 3.68 8.14 -2.39 -0.02 3.66 16 43 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 44 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -64.60 351.96 7.21 -57.39 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.94 Total: 23.46 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 4.14 Total: -30.54 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.23 Total: -52.27 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -0.13 Total: -43.47 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -64.60 7.21 -57.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835188998.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.780 kcal (2) G-P(sol) polarization free energy of solvation -64.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds