Wall clock time and date at job start Mon Mar 30 2020 00:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.47044 * 2 1 4 4 H 1.09006 * 110.05927 * 53.28507 * 3 2 1 5 5 C 1.54266 * 110.03329 * 291.86637 * 3 2 1 6 6 C 1.54891 * 104.19720 * 217.10798 * 5 3 2 7 7 C 1.54890 * 102.74803 * 37.93852 * 6 5 3 8 8 C 1.53878 * 110.03071 * 174.70164 * 3 2 1 9 9 H 1.09000 * 110.02769 * 238.56984 * 8 3 2 10 10 C 1.50695 * 110.03201 * 359.97438 * 8 3 2 11 11 O 1.20831 * 120.00216 * 86.47144 * 10 8 3 12 12 O 1.34228 * 120.00400 * 266.47356 * 10 8 3 13 13 C 1.45201 * 117.00432 * 180.02562 * 12 10 8 14 14 C 1.52996 * 109.47511 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47492 * 300.00197 * 14 13 12 16 16 C 1.53004 * 109.46585 * 59.99977 * 14 13 12 17 17 C 1.50691 * 109.47183 * 179.97438 * 14 13 12 18 18 H 1.07998 * 120.00537 * 0.02562 * 17 14 13 19 19 C 1.37882 * 120.00105 * 180.02562 * 17 14 13 20 20 N 1.31508 * 119.99969 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 120.00173 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47367 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46824 * 119.99858 * 21 19 17 24 24 H 1.48493 * 109.47513 * 239.99960 * 21 19 17 25 25 H 1.08993 * 109.46874 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47035 * 300.00477 * 1 2 3 27 27 H 1.08997 * 109.46432 * 60.00359 * 1 2 3 28 28 H 1.08994 * 109.47035 * 239.99523 * 2 1 3 29 29 H 1.08997 * 109.46432 * 119.99641 * 2 1 3 30 30 H 1.09005 * 110.48342 * 335.78474 * 5 3 2 31 31 H 1.08997 * 110.48574 * 98.29523 * 5 3 2 32 32 H 1.09000 * 110.75411 * 156.25388 * 6 5 3 33 33 H 1.08996 * 110.75225 * 279.44164 * 6 5 3 34 34 H 1.08994 * 110.48789 * 203.37969 * 7 6 5 35 35 H 1.09005 * 110.48467 * 80.73431 * 7 6 5 36 36 H 1.08999 * 109.47124 * 300.00302 * 13 12 10 37 37 H 1.09001 * 109.47021 * 59.99478 * 13 12 10 38 38 H 1.09007 * 109.46757 * 59.99589 * 15 14 13 39 39 H 1.08994 * 109.47405 * 179.97438 * 15 14 13 40 40 H 1.09001 * 109.46763 * 299.99909 * 15 14 13 41 41 H 1.09005 * 109.47558 * 60.00371 * 16 14 13 42 42 H 1.09004 * 109.46843 * 180.02562 * 16 14 13 43 43 H 1.08995 * 109.47371 * 299.99814 * 16 14 13 44 44 H 0.97000 * 120.00604 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5876 1.9990 0.8208 5 6 1.7073 2.1207 -1.3451 6 6 2.9371 3.0172 -1.6330 7 6 4.1181 2.1476 -1.1350 8 6 3.5730 1.4596 0.1335 9 1 3.8643 2.0244 1.0191 10 6 4.0990 0.0503 0.2237 11 8 4.3408 -0.5700 -0.7846 12 8 4.2990 -0.5159 1.4241 13 6 4.8080 -1.8758 1.4351 14 6 4.9710 -2.3478 2.8813 15 6 5.9541 -1.4294 3.6098 16 6 3.6143 -2.3053 3.5874 17 6 5.4986 -3.7593 2.8925 18 1 5.6982 -4.2687 1.9614 19 6 5.7266 -4.4005 4.0917 20 7 5.4831 -3.7805 5.2256 21 14 6.3799 -6.1505 4.1057 22 1 6.5691 -6.6194 2.7094 23 1 7.6812 -6.1872 4.8202 24 1 5.4096 -7.0357 4.7984 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.5878 1.3735 -2.1297 31 1 0.8048 2.7251 -1.2545 32 1 3.0278 3.2172 -2.7006 33 1 2.8759 3.9490 -1.0708 34 1 4.9763 2.7735 -0.8906 35 1 4.3880 1.4048 -1.8857 36 1 4.1078 -2.5300 0.9157 37 1 5.7746 -1.9060 0.9323 38 1 5.5720 -0.4086 3.6016 39 1 6.0699 -1.7654 4.6402 40 1 6.9206 -1.4597 3.1067 41 1 2.9138 -2.9596 3.0685 42 1 3.7304 -2.6411 4.6179 43 1 3.2323 -1.2845 3.5793 44 1 5.6431 -4.2317 6.0692 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835302718.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:50 Heat of formation + Delta-G solvation = -124.579847 kcal Electronic energy + Delta-G solvation = -21832.425119 eV Core-core repulsion = 18748.433685 eV Total energy + Delta-G solvation = -3083.991435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.51627 -38.12299 -36.29628 -34.78266 -33.16411 -31.28097 -29.64840 -27.66296 -25.71557 -25.60470 -25.07545 -22.94478 -22.02636 -20.63119 -19.05087 -18.77379 -17.07117 -16.23325 -15.83215 -15.71680 -15.35799 -14.77378 -14.46003 -14.20759 -13.36054 -13.17072 -13.11578 -12.74877 -12.48295 -12.17103 -11.81280 -11.60362 -11.45988 -11.30457 -11.19061 -11.14105 -10.96735 -10.87714 -10.74085 -10.65615 -10.56617 -10.45023 -10.37045 -10.18240 -9.86368 -9.83273 -9.38194 -9.26783 -8.73286 -8.37070 -6.01058 -4.12443 2.68789 3.27141 3.28917 3.35844 3.41767 4.37885 4.41028 4.47092 4.68197 5.09358 5.15812 5.25388 5.27531 5.35168 5.44926 5.47571 5.51530 5.56074 5.63706 5.76818 5.78920 5.95568 5.99203 6.08688 6.13368 6.13907 6.14827 6.26966 6.29923 6.39530 6.50448 6.77848 7.00012 7.12391 7.15723 7.19787 7.43011 7.63818 7.71196 8.06420 8.17746 8.33835 8.42474 8.87797 9.53047 11.00148 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.031600 B = 0.004493 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.857054 B = 6229.855083 C = 6488.167779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C -0.075 4.075 4 H 0.084 0.916 5 C -0.118 4.118 6 C -0.122 4.122 7 C -0.117 4.117 8 C -0.088 4.088 9 H 0.101 0.899 10 C 0.465 3.535 11 O -0.522 6.522 12 O -0.349 6.349 13 C 0.084 3.916 14 C 0.070 3.930 15 C -0.129 4.129 16 C -0.128 4.128 17 C -0.511 4.511 18 H 0.057 0.943 19 C 0.068 3.932 20 N -0.882 5.882 21 Si 0.894 3.106 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.016 0.984 39 H 0.083 0.917 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.083 0.917 43 H 0.016 0.984 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.204 12.543 -9.139 17.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C -0.093 4.093 4 H 0.102 0.898 5 C -0.155 4.155 6 C -0.160 4.160 7 C -0.154 4.154 8 C -0.107 4.107 9 H 0.119 0.881 10 C 0.309 3.691 11 O -0.411 6.411 12 O -0.265 6.265 13 C 0.012 3.988 14 C 0.069 3.931 15 C -0.186 4.186 16 C -0.186 4.186 17 C -0.549 4.549 18 H 0.075 0.925 19 C -0.134 4.134 20 N -0.520 5.520 21 Si 0.722 3.278 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.035 0.965 39 H 0.102 0.898 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.102 0.898 43 H 0.035 0.965 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.106 12.272 -9.198 16.903 hybrid contribution 0.482 -1.166 0.020 1.262 sum -6.624 11.106 -9.178 15.858 Atomic orbital electron populations 1.21721 0.95426 1.01703 1.01474 1.21907 0.96566 0.95715 1.03264 1.21724 0.91841 0.97109 0.98668 0.89811 1.22468 0.97805 0.98564 0.96708 1.22467 0.94516 0.97989 1.00979 1.22429 0.97959 0.98942 0.96072 1.21770 0.96709 0.90916 1.01340 0.88097 1.23335 0.74142 0.89398 0.82250 1.90590 1.48709 1.64488 1.37360 1.86549 1.75451 1.32988 1.31490 1.23621 0.97006 0.76208 1.02010 1.18238 0.93863 0.94402 0.86574 1.21761 0.97228 0.95873 1.03786 1.21757 0.96243 0.96797 1.03784 1.20982 1.43855 0.97299 0.92752 0.92519 1.24855 0.95152 0.97902 0.95442 1.69838 1.48304 1.36672 0.97220 0.86499 0.78577 0.84567 0.78147 1.19788 1.20965 1.20963 0.92718 0.92730 0.92848 0.91173 0.90928 0.91180 0.91426 0.91294 0.91341 0.91124 0.89582 0.92733 0.92749 0.96472 0.89783 0.95897 0.95912 0.89791 0.96476 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.77 37.16 0.36 -1.25 16 2 C -0.14 -1.86 4.12 -26.73 -0.11 -1.97 16 3 C -0.07 -0.87 2.93 -89.50 -0.26 -1.14 16 4 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 5 C -0.12 -1.15 5.55 -25.07 -0.14 -1.28 16 6 C -0.12 -1.11 6.91 -24.74 -0.17 -1.28 16 7 C -0.12 -1.34 6.31 -25.07 -0.16 -1.50 16 8 C -0.09 -1.17 3.40 -90.66 -0.31 -1.48 16 9 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 10 C 0.47 8.30 4.77 36.00 0.17 8.47 16 11 O -0.52 -10.46 14.79 -18.75 -0.28 -10.74 16 12 O -0.35 -7.07 8.41 -39.25 -0.33 -7.40 16 13 C 0.08 1.91 4.26 37.16 0.16 2.06 16 14 C 0.07 1.72 0.58 -155.67 -0.09 1.63 16 15 C -0.13 -3.14 8.11 37.16 0.30 -2.84 16 16 C -0.13 -3.11 8.11 37.16 0.30 -2.80 16 17 C -0.51 -13.77 8.01 -34.44 -0.28 -14.05 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 19 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 20 N -0.88 -24.07 9.35 55.43 0.52 -23.55 16 21 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.51 7.52 -51.93 -0.39 0.12 16 28 H 0.07 1.06 7.12 -51.93 -0.37 0.69 16 29 H 0.07 1.16 6.86 -51.93 -0.36 0.81 16 30 H 0.07 0.73 7.75 -51.93 -0.40 0.33 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.16 6.89 -51.93 -0.36 0.80 16 36 H 0.05 1.25 8.13 -51.93 -0.42 0.82 16 37 H 0.05 1.25 8.13 -51.93 -0.42 0.83 16 38 H 0.02 0.37 7.68 -51.92 -0.40 -0.03 16 39 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 43 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 44 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 338.76 15.07 5.11 5.11 Total: -1.00 -28.32 338.76 -8.23 -36.56 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.92 Total: -0.22 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -0.31 Total: -15.69 kcal Atomic # 7 Polarization: -24.07 SS G_CDS: 0.52 Total: -23.55 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.61 Total: -18.13 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.32 -8.23 -36.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835302718.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.021 kcal (2) G-P(sol) polarization free energy of solvation -28.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds