Wall clock time and date at job start Mon Mar 30 2020 00:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.47044 * 2 1 4 4 H 1.09006 * 110.05927 * 53.28507 * 3 2 1 5 5 C 1.54266 * 110.03329 * 291.86637 * 3 2 1 6 6 C 1.54891 * 104.19720 * 217.10798 * 5 3 2 7 7 C 1.54890 * 102.74803 * 37.93852 * 6 5 3 8 8 C 1.53878 * 110.03071 * 174.70164 * 3 2 1 9 9 H 1.09000 * 110.02769 * 238.56984 * 8 3 2 10 10 C 1.50695 * 110.03201 * 359.97438 * 8 3 2 11 11 O 1.20831 * 120.00216 * 86.47144 * 10 8 3 12 12 O 1.34228 * 120.00400 * 266.47356 * 10 8 3 13 13 C 1.45201 * 117.00432 * 180.02562 * 12 10 8 14 14 C 1.52996 * 109.47511 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47492 * 300.00197 * 14 13 12 16 16 C 1.53004 * 109.46585 * 59.99977 * 14 13 12 17 17 C 1.50691 * 109.47183 * 179.97438 * 14 13 12 18 18 H 1.07998 * 120.00537 * 0.02562 * 17 14 13 19 19 C 1.37882 * 120.00105 * 180.02562 * 17 14 13 20 20 N 1.31508 * 119.99969 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 120.00173 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47367 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46824 * 119.99858 * 21 19 17 24 24 H 1.48493 * 109.47513 * 239.99960 * 21 19 17 25 25 H 1.08993 * 109.46874 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47035 * 300.00477 * 1 2 3 27 27 H 1.08997 * 109.46432 * 60.00359 * 1 2 3 28 28 H 1.08994 * 109.47035 * 239.99523 * 2 1 3 29 29 H 1.08997 * 109.46432 * 119.99641 * 2 1 3 30 30 H 1.09005 * 110.48342 * 335.78474 * 5 3 2 31 31 H 1.08997 * 110.48574 * 98.29523 * 5 3 2 32 32 H 1.09000 * 110.75411 * 156.25388 * 6 5 3 33 33 H 1.08996 * 110.75225 * 279.44164 * 6 5 3 34 34 H 1.08994 * 110.48789 * 203.37969 * 7 6 5 35 35 H 1.09005 * 110.48467 * 80.73431 * 7 6 5 36 36 H 1.08999 * 109.47124 * 300.00302 * 13 12 10 37 37 H 1.09001 * 109.47021 * 59.99478 * 13 12 10 38 38 H 1.09007 * 109.46757 * 59.99589 * 15 14 13 39 39 H 1.08994 * 109.47405 * 179.97438 * 15 14 13 40 40 H 1.09001 * 109.46763 * 299.99909 * 15 14 13 41 41 H 1.09005 * 109.47558 * 60.00371 * 16 14 13 42 42 H 1.09004 * 109.46843 * 180.02562 * 16 14 13 43 43 H 1.08995 * 109.47371 * 299.99814 * 16 14 13 44 44 H 0.97000 * 120.00604 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5876 1.9990 0.8208 5 6 1.7073 2.1207 -1.3451 6 6 2.9371 3.0172 -1.6330 7 6 4.1181 2.1476 -1.1350 8 6 3.5730 1.4596 0.1335 9 1 3.8643 2.0244 1.0191 10 6 4.0990 0.0503 0.2237 11 8 4.3408 -0.5700 -0.7846 12 8 4.2990 -0.5159 1.4241 13 6 4.8080 -1.8758 1.4351 14 6 4.9710 -2.3478 2.8813 15 6 5.9541 -1.4294 3.6098 16 6 3.6143 -2.3053 3.5874 17 6 5.4986 -3.7593 2.8925 18 1 5.6982 -4.2687 1.9614 19 6 5.7266 -4.4005 4.0917 20 7 5.4831 -3.7805 5.2256 21 14 6.3799 -6.1505 4.1057 22 1 6.5691 -6.6194 2.7094 23 1 7.6812 -6.1872 4.8202 24 1 5.4096 -7.0357 4.7984 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.5878 1.3735 -2.1297 31 1 0.8048 2.7251 -1.2545 32 1 3.0278 3.2172 -2.7006 33 1 2.8759 3.9490 -1.0708 34 1 4.9763 2.7735 -0.8906 35 1 4.3880 1.4048 -1.8857 36 1 4.1078 -2.5300 0.9157 37 1 5.7746 -1.9060 0.9323 38 1 5.5720 -0.4086 3.6016 39 1 6.0699 -1.7654 4.6402 40 1 6.9206 -1.4597 3.1067 41 1 2.9138 -2.9596 3.0685 42 1 3.7304 -2.6411 4.6179 43 1 3.2323 -1.2845 3.5793 44 1 5.6431 -4.2317 6.0692 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835302718.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:49 Heat of formation + Delta-G solvation = -137.043055 kcal Electronic energy + Delta-G solvation = -21832.965565 eV Core-core repulsion = 18748.433685 eV Total energy + Delta-G solvation = -3084.531880 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.89129 -39.36800 -37.94636 -36.57945 -34.10768 -33.29690 -30.68916 -28.53657 -27.59767 -27.56469 -27.05205 -23.99925 -23.28175 -21.49020 -20.78094 -20.24100 -18.49991 -17.83040 -17.45518 -17.25506 -16.63024 -16.52308 -15.44000 -15.35269 -14.98465 -14.78505 -14.46874 -14.19379 -13.66716 -13.59575 -13.29083 -13.17686 -13.02159 -12.84511 -12.64602 -12.53088 -12.35490 -12.25342 -12.15882 -11.91200 -11.87736 -11.74748 -11.68470 -11.50914 -11.39042 -11.32335 -11.24965 -11.05763 -10.74783 -10.42449 -8.06306 -6.24524 1.25889 1.40595 1.43396 1.53402 1.86187 2.44286 3.16916 3.44716 3.55581 3.69110 4.02781 4.16249 4.23421 4.26022 4.33278 4.37203 4.47980 4.54665 4.59192 4.64822 4.74225 4.76603 4.82814 4.84324 5.02164 5.02366 5.12581 5.15501 5.18026 5.20205 5.21571 5.24415 5.33515 5.35362 5.40218 5.51184 5.60226 5.61565 5.70204 6.05255 6.15718 6.35372 6.77435 6.86369 7.43504 8.93570 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.031600 B = 0.004493 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.857054 B = 6229.855083 C = 6488.167779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.136 4.136 3 C -0.073 4.073 4 H 0.105 0.895 5 C -0.114 4.114 6 C -0.113 4.113 7 C -0.118 4.118 8 C -0.087 4.087 9 H 0.117 0.883 10 C 0.462 3.538 11 O -0.548 6.548 12 O -0.354 6.354 13 C 0.099 3.901 14 C 0.061 3.939 15 C -0.117 4.117 16 C -0.115 4.115 17 C -0.534 4.534 18 H 0.046 0.954 19 C 0.029 3.971 20 N -0.899 5.899 21 Si 0.952 3.048 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.278 1.278 25 H 0.046 0.954 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.043 0.957 37 H 0.044 0.956 38 H 0.032 0.968 39 H 0.064 0.936 40 H 0.018 0.982 41 H 0.017 0.983 42 H 0.064 0.936 43 H 0.031 0.969 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.101 14.375 -9.517 19.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.174 4.174 3 C -0.092 4.092 4 H 0.123 0.877 5 C -0.152 4.152 6 C -0.150 4.150 7 C -0.155 4.155 8 C -0.107 4.107 9 H 0.135 0.865 10 C 0.307 3.693 11 O -0.439 6.439 12 O -0.270 6.270 13 C 0.025 3.975 14 C 0.061 3.939 15 C -0.175 4.175 16 C -0.173 4.173 17 C -0.572 4.572 18 H 0.065 0.935 19 C -0.171 4.171 20 N -0.537 5.537 21 Si 0.778 3.222 22 H -0.199 1.199 23 H -0.204 1.204 24 H -0.204 1.204 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.038 0.962 41 H 0.036 0.964 42 H 0.082 0.918 43 H 0.050 0.950 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.009 14.118 -9.581 18.848 hybrid contribution 0.755 -1.721 0.107 1.883 sum -7.254 12.397 -9.474 17.206 Atomic orbital electron populations 1.21693 0.93328 1.01795 1.02992 1.21852 0.98461 0.96651 1.00427 1.21828 0.90358 0.96082 1.00895 0.87673 1.22470 0.99301 0.98547 0.94863 1.22471 0.92450 0.98024 1.02041 1.22473 0.99756 0.98816 0.94480 1.22056 0.97969 0.87550 1.03083 0.86461 1.24371 0.73068 0.90856 0.80977 1.90576 1.49844 1.65563 1.37968 1.86546 1.75710 1.31580 1.33198 1.23163 0.96272 0.77662 1.00398 1.18264 0.94036 0.93823 0.87827 1.21607 0.97067 0.96529 1.02296 1.21587 0.96008 0.97445 1.02242 1.21214 1.44756 0.98639 0.92636 0.93538 1.25501 0.95264 1.01228 0.95111 1.69938 1.48367 1.37840 0.97529 0.85595 0.78141 0.80460 0.77959 1.19884 1.20406 1.20415 0.93459 0.91498 0.90925 0.93683 0.94103 0.92355 0.88814 0.90095 0.89117 0.89712 0.92085 0.93870 0.93762 0.94917 0.91738 0.96233 0.96353 0.91766 0.94984 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.77 71.99 0.70 -2.20 16 2 C -0.14 -3.64 4.12 30.60 0.13 -3.51 16 3 C -0.07 -1.55 2.93 -10.07 -0.03 -1.58 16 4 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 5 C -0.11 -1.86 5.55 31.67 0.18 -1.69 16 6 C -0.11 -1.65 6.91 31.89 0.22 -1.43 16 7 C -0.12 -2.49 6.31 31.67 0.20 -2.29 16 8 C -0.09 -2.19 3.40 -10.82 -0.04 -2.23 16 9 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 10 C 0.46 16.60 4.77 71.23 0.34 16.94 16 11 O -0.55 -22.66 14.79 21.95 0.32 -22.33 16 12 O -0.35 -14.47 8.41 -51.40 -0.43 -14.90 16 13 C 0.10 4.57 4.26 71.98 0.31 4.88 16 14 C 0.06 3.06 0.58 -52.93 -0.03 3.03 16 15 C -0.12 -5.75 8.11 71.98 0.58 -5.17 16 16 C -0.12 -5.64 8.11 71.98 0.58 -5.06 16 17 C -0.53 -29.34 8.01 25.60 0.21 -29.14 16 18 H 0.05 2.58 7.74 -2.91 -0.02 2.56 16 19 C 0.03 1.57 5.15 84.66 0.44 2.00 16 20 N -0.90 -49.30 9.35 21.45 0.20 -49.10 16 21 Si 0.95 43.13 29.54 68.60 2.03 45.15 16 22 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 24 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 25 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.07 1.21 7.52 -2.39 -0.02 1.19 16 28 H 0.04 1.40 7.12 -2.39 -0.02 1.38 16 29 H 0.04 1.33 6.86 -2.39 -0.02 1.31 16 30 H 0.06 1.10 7.75 -2.38 -0.02 1.08 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.06 1.61 6.89 -2.38 -0.02 1.60 16 36 H 0.04 2.06 8.13 -2.39 -0.02 2.04 16 37 H 0.04 2.10 8.13 -2.39 -0.02 2.08 16 38 H 0.03 1.44 7.68 -2.38 -0.02 1.43 16 39 H 0.06 3.42 6.07 -2.39 -0.01 3.40 16 40 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.02 0.85 8.14 -2.38 -0.02 0.84 16 42 H 0.06 3.40 6.07 -2.38 -0.01 3.39 16 43 H 0.03 1.42 7.68 -2.39 -0.02 1.40 16 44 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -61.69 338.76 6.84 -54.85 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.94 Total: 13.76 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: 3.78 Total: -27.43 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.20 Total: -49.10 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -0.11 Total: -37.24 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -61.69 6.84 -54.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835302718.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.197 kcal (2) G-P(sol) polarization free energy of solvation -61.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds