Wall clock time and date at job start Mon Mar 30 2020 00:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46819 * 2 1 4 4 H 1.09003 * 110.05537 * 304.91660 * 3 2 1 5 5 C 1.54260 * 110.03472 * 66.33117 * 3 2 1 6 6 C 1.54884 * 104.19710 * 142.89605 * 5 3 2 7 7 C 1.54891 * 102.74865 * 322.05884 * 6 5 3 8 8 C 1.53872 * 110.03114 * 183.50028 * 3 2 1 9 9 H 1.09003 * 110.03435 * 121.42762 * 8 3 2 10 10 C 1.50703 * 110.03232 * 359.97438 * 8 3 2 11 11 O 1.20821 * 119.99674 * 273.94702 * 10 8 3 12 12 O 1.34231 * 119.99869 * 93.94846 * 10 8 3 13 13 C 1.45204 * 116.99398 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.46803 * 180.02562 * 13 12 10 15 15 C 1.53008 * 109.47300 * 300.00526 * 14 13 12 16 16 C 1.53002 * 109.47186 * 59.99880 * 14 13 12 17 17 C 1.50696 * 109.47141 * 180.02562 * 14 13 12 18 18 H 1.08000 * 120.00111 * 359.97438 * 17 14 13 19 19 C 1.37879 * 119.99880 * 179.97438 * 17 14 13 20 20 N 1.31513 * 119.99998 * 193.61400 * 19 17 14 21 21 Si 1.86805 * 120.00120 * 13.60901 * 19 17 14 22 22 H 1.48507 * 109.46705 * 84.86316 * 21 19 17 23 23 H 1.48493 * 109.47159 * 204.85745 * 21 19 17 24 24 H 1.48500 * 109.47126 * 324.86409 * 21 19 17 25 25 H 1.09004 * 109.47147 * 299.99935 * 1 2 3 26 26 H 1.08994 * 109.47302 * 60.00441 * 1 2 3 27 27 H 1.09003 * 109.46761 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47169 * 239.99751 * 2 1 3 29 29 H 1.08994 * 109.47302 * 119.99558 * 2 1 3 30 30 H 1.09003 * 110.48584 * 261.57578 * 5 3 2 31 31 H 1.09001 * 110.48448 * 24.21681 * 5 3 2 32 32 H 1.09005 * 110.75825 * 80.37034 * 6 5 3 33 33 H 1.08998 * 110.76031 * 203.74311 * 6 5 3 34 34 H 1.09005 * 110.48442 * 279.26207 * 7 6 5 35 35 H 1.08998 * 110.60521 * 156.67475 * 7 6 5 36 36 H 1.08995 * 109.47532 * 300.00075 * 13 12 10 37 37 H 1.08996 * 109.47071 * 60.00452 * 13 12 10 38 38 H 1.08998 * 109.46767 * 68.30994 * 15 14 13 39 39 H 1.09000 * 109.46910 * 188.31632 * 15 14 13 40 40 H 1.08998 * 109.46573 * 308.31590 * 15 14 13 41 41 H 1.09009 * 109.46988 * 60.00278 * 16 14 13 42 42 H 1.08998 * 109.47609 * 179.97438 * 16 14 13 43 43 H 1.09003 * 109.47224 * 300.00553 * 16 14 13 44 44 H 0.97001 * 120.00162 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6120 1.9903 -0.8396 5 6 1.6676 2.1347 1.3273 6 6 2.8883 3.0345 1.6421 7 6 4.0835 2.1600 1.1886 8 6 3.5761 1.4586 -0.0883 9 1 3.8936 2.0141 -0.9707 10 6 4.1045 0.0484 -0.1468 11 8 4.3091 -0.5629 0.8750 12 8 4.3479 -0.5283 -1.3343 13 6 4.8564 -1.8882 -1.3146 14 6 5.0718 -2.3729 -2.7497 15 6 3.7419 -2.3364 -3.5055 16 6 6.0813 -1.4610 -3.4499 17 6 5.5989 -3.7845 -2.7294 18 1 5.7642 -4.2857 -1.7871 19 6 5.8702 -4.4362 -3.9138 20 7 6.0699 -5.7361 -3.9183 21 14 5.9540 -3.4728 -5.5121 22 1 7.3155 -2.9028 -5.6756 23 1 5.6561 -4.3773 -6.6514 24 1 4.9573 -2.3725 -5.4796 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 0.7695 2.7399 1.2032 31 1 1.5248 1.3959 2.1159 32 1 2.8456 3.9590 1.0661 33 1 2.9475 3.2458 2.7098 34 1 4.3310 1.4252 1.9548 35 1 4.9501 2.7816 0.9635 36 1 5.8040 -1.9141 -0.7767 37 1 4.1374 -2.5377 -0.8155 38 1 3.4339 -1.3007 -3.6488 39 1 3.8623 -2.8175 -4.4761 40 1 2.9823 -2.8650 -2.9296 41 1 7.0289 -1.4869 -2.9116 42 1 6.2352 -1.8065 -4.4722 43 1 5.6997 -0.4400 -3.4646 44 1 6.2611 -6.1945 -4.7515 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835302720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:52 Heat of formation + Delta-G solvation = -104.227970 kcal Electronic energy + Delta-G solvation = -21919.371662 eV Core-core repulsion = 18836.262751 eV Total energy + Delta-G solvation = -3083.108911 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.63136 -38.26374 -36.55980 -35.00870 -33.22851 -31.73437 -29.79512 -27.71777 -26.34253 -26.17617 -24.91023 -23.04704 -22.14204 -20.68395 -19.14833 -19.06295 -17.19842 -16.32070 -15.97921 -15.87426 -15.49147 -15.18960 -14.54641 -14.38584 -13.52557 -13.29186 -13.24513 -12.89731 -12.59295 -12.42373 -12.22514 -11.99920 -11.93303 -11.73245 -11.58941 -11.35964 -11.18976 -10.97863 -10.80525 -10.67073 -10.53246 -10.38980 -10.33525 -10.21868 -10.01537 -9.85836 -9.70545 -9.09200 -8.64315 -8.45935 -6.15621 -4.13865 2.58043 3.17608 3.27082 3.35877 3.40355 4.32403 4.36996 4.40067 4.60409 5.02463 5.08860 5.16205 5.20629 5.26042 5.36644 5.38125 5.45037 5.49986 5.57336 5.70403 5.73183 5.80991 5.89315 5.91734 5.94188 6.02018 6.08614 6.15663 6.20989 6.22642 6.27687 6.36210 6.54681 6.59665 6.71586 6.79150 6.89645 7.09936 7.23520 7.45237 7.71289 8.23308 8.42534 8.86868 9.47997 10.97178 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.030704 B = 0.004811 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.716201 B = 5818.039983 C = 6047.977121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C -0.075 4.075 4 H 0.083 0.917 5 C -0.118 4.118 6 C -0.122 4.122 7 C -0.117 4.117 8 C -0.088 4.088 9 H 0.101 0.899 10 C 0.467 3.533 11 O -0.517 6.517 12 O -0.355 6.355 13 C 0.093 3.907 14 C 0.043 3.957 15 C -0.142 4.142 16 C -0.144 4.144 17 C -0.518 4.518 18 H 0.075 0.925 19 C 0.079 3.921 20 N -0.891 5.891 21 Si 0.880 3.120 22 H -0.285 1.285 23 H -0.304 1.304 24 H -0.243 1.243 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.032 0.968 39 H 0.056 0.944 40 H 0.042 0.958 41 H 0.048 0.952 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.747 17.563 7.106 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C -0.094 4.094 4 H 0.102 0.898 5 C -0.156 4.156 6 C -0.160 4.160 7 C -0.155 4.155 8 C -0.107 4.107 9 H 0.119 0.881 10 C 0.310 3.690 11 O -0.406 6.406 12 O -0.271 6.271 13 C 0.020 3.980 14 C 0.042 3.958 15 C -0.199 4.199 16 C -0.201 4.201 17 C -0.555 4.555 18 H 0.093 0.907 19 C -0.124 4.124 20 N -0.527 5.527 21 Si 0.712 3.288 22 H -0.212 1.212 23 H -0.232 1.232 24 H -0.168 1.168 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.630 17.151 7.280 20.534 hybrid contribution 0.332 0.122 -0.910 0.976 sum -8.298 17.274 6.370 20.194 Atomic orbital electron populations 1.21724 0.95366 1.01765 1.01502 1.21914 0.96646 0.95684 1.03286 1.21726 0.91642 0.97094 0.98894 0.89833 1.22468 0.97823 0.98485 0.96787 1.22471 0.94428 0.97943 1.01113 1.22440 0.98049 0.98882 0.96084 1.21780 0.96803 0.90680 1.01434 0.88115 1.23327 0.74139 0.89367 0.82192 1.90609 1.49186 1.64933 1.35866 1.86511 1.75388 1.32675 1.32499 1.23361 0.97907 0.76345 1.00353 1.18578 0.93014 0.95358 0.88862 1.22278 0.98046 0.98764 1.00807 1.22245 0.99939 0.98265 0.99627 1.20671 1.44978 0.95032 0.94870 0.90686 1.24908 0.94238 0.94419 0.98858 1.69942 1.47467 1.07638 1.27697 0.87393 0.78938 0.79693 0.82751 1.21231 1.23230 1.16828 0.92775 0.92778 0.92657 0.91029 0.91021 0.91388 0.91092 0.91345 0.91209 0.89540 0.91095 0.91979 0.91852 0.94932 0.92541 0.93837 0.93259 0.94263 0.94156 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.75 37.16 0.36 -1.15 16 2 C -0.14 -1.75 4.11 -26.73 -0.11 -1.86 16 3 C -0.07 -0.81 2.95 -89.50 -0.26 -1.07 16 4 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 5 C -0.12 -1.07 5.46 -25.08 -0.14 -1.21 16 6 C -0.12 -1.03 6.91 -24.74 -0.17 -1.20 16 7 C -0.12 -1.26 6.31 -25.07 -0.16 -1.42 16 8 C -0.09 -1.08 3.40 -90.65 -0.31 -1.38 16 9 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 10 C 0.47 7.77 4.78 36.01 0.17 7.94 16 11 O -0.52 -9.87 14.71 -18.75 -0.28 -10.15 16 12 O -0.35 -6.60 8.63 -39.26 -0.34 -6.94 16 13 C 0.09 1.98 4.25 37.16 0.16 2.13 16 14 C 0.04 0.99 0.58 -155.66 -0.09 0.90 16 15 C -0.14 -3.10 7.57 37.16 0.28 -2.82 16 16 C -0.14 -3.14 7.63 37.16 0.28 -2.86 16 17 C -0.52 -14.28 8.62 -34.44 -0.30 -14.57 16 18 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 19 C 0.08 2.22 5.33 -17.82 -0.10 2.13 16 20 N -0.89 -26.89 13.96 55.43 0.77 -26.12 16 21 Si 0.88 21.47 22.78 -169.99 -3.87 17.60 16 22 H -0.28 -6.90 7.09 56.52 0.40 -6.50 16 23 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.24 -5.47 4.58 56.52 0.26 -5.21 16 25 H 0.05 0.49 7.46 -51.93 -0.39 0.10 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 1.06 7.00 -51.93 -0.36 0.69 16 29 H 0.07 1.03 7.03 -51.93 -0.37 0.67 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.70 7.78 -51.93 -0.40 0.29 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 1.10 6.89 -51.93 -0.36 0.74 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 1.35 8.13 -51.93 -0.42 0.92 16 37 H 0.06 1.38 8.13 -51.93 -0.42 0.96 16 38 H 0.03 0.64 7.92 -51.93 -0.41 0.22 16 39 H 0.06 1.29 4.02 -51.93 -0.21 1.08 16 40 H 0.04 0.92 8.13 -51.93 -0.42 0.50 16 41 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 42 H 0.04 0.89 2.44 -51.93 -0.13 0.76 16 43 H 0.04 0.78 7.68 -51.93 -0.40 0.38 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 328.71 15.07 4.95 4.95 Total: -1.00 -30.17 328.71 -6.93 -37.09 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -7.79 Total: 0.00 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -0.37 Total: -16.44 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: 0.77 Total: -26.12 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.61 Total: -17.08 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -3.87 Total: 17.60 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.17 -6.93 -37.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835302720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.137 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds