Wall clock time and date at job start Mon Mar 30 2020 00:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46819 * 2 1 4 4 H 1.09003 * 110.05537 * 304.91660 * 3 2 1 5 5 C 1.54260 * 110.03472 * 66.33117 * 3 2 1 6 6 C 1.54884 * 104.19710 * 142.89605 * 5 3 2 7 7 C 1.54891 * 102.74865 * 322.05884 * 6 5 3 8 8 C 1.53872 * 110.03114 * 183.50028 * 3 2 1 9 9 H 1.09003 * 110.03435 * 121.42762 * 8 3 2 10 10 C 1.50703 * 110.03232 * 359.97438 * 8 3 2 11 11 O 1.20821 * 119.99674 * 273.94702 * 10 8 3 12 12 O 1.34231 * 119.99869 * 93.94846 * 10 8 3 13 13 C 1.45204 * 116.99398 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.46803 * 180.02562 * 13 12 10 15 15 C 1.53008 * 109.47300 * 300.00526 * 14 13 12 16 16 C 1.53002 * 109.47186 * 59.99880 * 14 13 12 17 17 C 1.50696 * 109.47141 * 180.02562 * 14 13 12 18 18 H 1.08000 * 120.00111 * 359.97438 * 17 14 13 19 19 C 1.37879 * 119.99880 * 179.97438 * 17 14 13 20 20 N 1.31513 * 119.99998 * 193.61400 * 19 17 14 21 21 Si 1.86805 * 120.00120 * 13.60901 * 19 17 14 22 22 H 1.48507 * 109.46705 * 84.86316 * 21 19 17 23 23 H 1.48493 * 109.47159 * 204.85745 * 21 19 17 24 24 H 1.48500 * 109.47126 * 324.86409 * 21 19 17 25 25 H 1.09004 * 109.47147 * 299.99935 * 1 2 3 26 26 H 1.08994 * 109.47302 * 60.00441 * 1 2 3 27 27 H 1.09003 * 109.46761 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47169 * 239.99751 * 2 1 3 29 29 H 1.08994 * 109.47302 * 119.99558 * 2 1 3 30 30 H 1.09003 * 110.48584 * 261.57578 * 5 3 2 31 31 H 1.09001 * 110.48448 * 24.21681 * 5 3 2 32 32 H 1.09005 * 110.75825 * 80.37034 * 6 5 3 33 33 H 1.08998 * 110.76031 * 203.74311 * 6 5 3 34 34 H 1.09005 * 110.48442 * 279.26207 * 7 6 5 35 35 H 1.08998 * 110.60521 * 156.67475 * 7 6 5 36 36 H 1.08995 * 109.47532 * 300.00075 * 13 12 10 37 37 H 1.08996 * 109.47071 * 60.00452 * 13 12 10 38 38 H 1.08998 * 109.46767 * 68.30994 * 15 14 13 39 39 H 1.09000 * 109.46910 * 188.31632 * 15 14 13 40 40 H 1.08998 * 109.46573 * 308.31590 * 15 14 13 41 41 H 1.09009 * 109.46988 * 60.00278 * 16 14 13 42 42 H 1.08998 * 109.47609 * 179.97438 * 16 14 13 43 43 H 1.09003 * 109.47224 * 300.00553 * 16 14 13 44 44 H 0.97001 * 120.00162 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6120 1.9903 -0.8396 5 6 1.6676 2.1347 1.3273 6 6 2.8883 3.0345 1.6421 7 6 4.0835 2.1600 1.1886 8 6 3.5761 1.4586 -0.0883 9 1 3.8936 2.0141 -0.9707 10 6 4.1045 0.0484 -0.1468 11 8 4.3091 -0.5629 0.8750 12 8 4.3479 -0.5283 -1.3343 13 6 4.8564 -1.8882 -1.3146 14 6 5.0718 -2.3729 -2.7497 15 6 3.7419 -2.3364 -3.5055 16 6 6.0813 -1.4610 -3.4499 17 6 5.5989 -3.7845 -2.7294 18 1 5.7642 -4.2857 -1.7871 19 6 5.8702 -4.4362 -3.9138 20 7 6.0699 -5.7361 -3.9183 21 14 5.9540 -3.4728 -5.5121 22 1 7.3155 -2.9028 -5.6756 23 1 5.6561 -4.3773 -6.6514 24 1 4.9573 -2.3725 -5.4796 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 0.7695 2.7399 1.2032 31 1 1.5248 1.3959 2.1159 32 1 2.8456 3.9590 1.0661 33 1 2.9475 3.2458 2.7098 34 1 4.3310 1.4252 1.9548 35 1 4.9501 2.7816 0.9635 36 1 5.8040 -1.9141 -0.7767 37 1 4.1374 -2.5377 -0.8155 38 1 3.4339 -1.3007 -3.6488 39 1 3.8623 -2.8175 -4.4761 40 1 2.9823 -2.8650 -2.9296 41 1 7.0289 -1.4869 -2.9116 42 1 6.2352 -1.8065 -4.4722 43 1 5.6997 -0.4400 -3.4646 44 1 6.2611 -6.1945 -4.7515 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835302720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:52 Heat of formation + Delta-G solvation = -120.952935 kcal Electronic energy + Delta-G solvation = -21920.096911 eV Core-core repulsion = 18836.262751 eV Total energy + Delta-G solvation = -3083.834160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.92332 -39.45309 -38.11487 -36.67882 -34.10118 -33.86665 -30.76277 -28.52737 -28.05903 -27.85030 -27.02291 -24.03781 -23.30748 -21.47715 -21.00331 -20.26668 -18.54853 -18.00420 -17.55987 -17.30258 -17.00498 -16.57077 -15.49860 -15.41878 -15.02381 -14.84004 -14.82087 -14.20766 -14.12439 -13.81850 -13.72875 -13.62826 -13.23630 -13.04342 -12.57618 -12.42923 -12.29680 -12.24727 -12.00328 -11.89698 -11.85708 -11.85047 -11.61022 -11.50441 -11.50007 -11.32236 -11.17080 -11.05322 -10.65269 -10.41675 -8.35225 -6.38303 1.24724 1.35301 1.36863 1.49094 1.79629 2.31799 3.00904 3.43422 3.55934 3.68094 3.99339 4.03780 4.10381 4.16910 4.31311 4.37281 4.38438 4.48689 4.55296 4.59171 4.65461 4.75065 4.76784 4.78417 4.81942 4.84549 4.92270 5.02812 5.07797 5.11828 5.14228 5.16602 5.21977 5.25271 5.35005 5.39763 5.42113 5.50416 5.60788 5.66410 5.71715 6.23154 6.64312 6.81787 7.27173 8.81572 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.030704 B = 0.004811 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.716201 B = 5818.039983 C = 6047.977121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.138 4.138 3 C -0.073 4.073 4 H 0.108 0.892 5 C -0.116 4.116 6 C -0.113 4.113 7 C -0.119 4.119 8 C -0.085 4.085 9 H 0.123 0.877 10 C 0.463 3.537 11 O -0.548 6.548 12 O -0.351 6.351 13 C 0.106 3.894 14 C 0.038 3.962 15 C -0.138 4.138 16 C -0.142 4.142 17 C -0.524 4.524 18 H 0.029 0.971 19 C 0.024 3.976 20 N -0.942 5.942 21 Si 0.938 3.062 22 H -0.278 1.278 23 H -0.308 1.308 24 H -0.205 1.205 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.045 0.955 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.037 0.963 41 H 0.045 0.955 42 H 0.036 0.964 43 H 0.071 0.929 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.146 21.725 5.991 24.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.176 4.176 3 C -0.091 4.091 4 H 0.127 0.873 5 C -0.153 4.153 6 C -0.150 4.150 7 C -0.157 4.157 8 C -0.104 4.104 9 H 0.141 0.859 10 C 0.308 3.692 11 O -0.438 6.438 12 O -0.267 6.267 13 C 0.033 3.967 14 C 0.037 3.963 15 C -0.195 4.195 16 C -0.198 4.198 17 C -0.562 4.562 18 H 0.047 0.953 19 C -0.175 4.175 20 N -0.581 5.581 21 Si 0.766 3.234 22 H -0.205 1.205 23 H -0.237 1.237 24 H -0.129 1.129 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.090 0.910 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.042 21.346 6.187 24.388 hybrid contribution 0.765 -1.237 -0.393 1.506 sum -9.277 20.109 5.794 22.892 Atomic orbital electron populations 1.21696 0.93442 1.01734 1.03000 1.21870 0.98402 0.96726 1.00573 1.21827 0.90292 0.95973 1.00995 0.87341 1.22475 0.99250 0.98425 0.95188 1.22475 0.92440 0.98038 1.02082 1.22485 0.99890 0.98726 0.94567 1.22063 0.97866 0.87288 1.03227 0.85857 1.24394 0.72991 0.90789 0.81003 1.90603 1.50444 1.66064 1.36735 1.86499 1.75532 1.30846 1.33835 1.22878 0.96879 0.77966 0.99006 1.18525 0.94210 0.93157 0.90379 1.22198 0.96891 1.00511 0.99889 1.22184 0.99361 0.99400 0.98884 1.20922 1.44754 0.97365 0.93146 0.95273 1.25774 0.93788 0.95134 1.02763 1.70087 1.49438 1.09716 1.28827 0.86448 0.80140 0.79213 0.77582 1.20533 1.23716 1.12904 0.91194 0.91250 0.93575 0.93582 0.93938 0.88870 0.92560 0.89013 0.90327 0.92302 0.89588 0.93349 0.93680 0.91923 0.93181 0.94343 0.93548 0.94543 0.91048 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.75 71.98 0.70 -1.97 16 2 C -0.14 -3.38 4.11 30.60 0.13 -3.25 16 3 C -0.07 -1.35 2.95 -10.07 -0.03 -1.38 16 4 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 5 C -0.12 -1.72 5.46 31.67 0.17 -1.55 16 6 C -0.11 -1.49 6.91 31.88 0.22 -1.27 16 7 C -0.12 -2.29 6.31 31.67 0.20 -2.09 16 8 C -0.09 -1.89 3.40 -10.82 -0.04 -1.92 16 9 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 10 C 0.46 15.23 4.78 71.24 0.34 15.57 16 11 O -0.55 -21.61 14.71 21.98 0.32 -21.29 16 12 O -0.35 -12.73 8.63 -51.42 -0.44 -13.17 16 13 C 0.11 4.61 4.25 71.98 0.31 4.92 16 14 C 0.04 1.75 0.58 -52.93 -0.03 1.72 16 15 C -0.14 -5.78 7.57 71.98 0.54 -5.23 16 16 C -0.14 -5.84 7.63 71.98 0.55 -5.29 16 17 C -0.52 -29.89 8.62 25.60 0.22 -29.67 16 18 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 19 C 0.02 1.36 5.33 84.66 0.45 1.81 16 20 N -0.94 -58.93 13.96 21.45 0.30 -58.63 16 21 Si 0.94 43.57 22.78 68.60 1.56 45.14 16 22 H -0.28 -12.60 7.09 99.48 0.71 -11.90 16 23 H -0.31 -14.49 7.11 99.48 0.71 -13.79 16 24 H -0.21 -8.32 4.58 99.48 0.46 -7.86 16 25 H 0.07 1.09 7.46 -2.38 -0.02 1.08 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.05 1.34 7.00 -2.39 -0.02 1.32 16 29 H 0.04 1.26 7.03 -2.39 -0.02 1.25 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 1.01 7.78 -2.39 -0.02 0.99 16 32 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 1.47 6.89 -2.38 -0.02 1.46 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.05 2.19 8.13 -2.39 -0.02 2.17 16 37 H 0.04 2.08 8.13 -2.39 -0.02 2.06 16 38 H 0.06 2.24 7.92 -2.39 -0.02 2.23 16 39 H 0.05 2.15 4.02 -2.39 -0.01 2.14 16 40 H 0.04 1.61 8.13 -2.39 -0.02 1.59 16 41 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 42 H 0.04 1.52 2.44 -2.39 -0.01 1.52 16 43 H 0.07 2.50 7.68 -2.39 -0.02 2.48 16 44 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -68.63 328.71 6.18 -62.45 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.70 Total: 15.12 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 3.74 Total: -29.61 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: 0.30 Total: -58.63 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -0.12 Total: -34.46 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.56 Total: 45.14 kcal Total: -68.63 6.18 -62.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835302720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.508 kcal (2) G-P(sol) polarization free energy of solvation -68.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds