Wall clock time and date at job start Mon Mar 30 2020 00:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47538 * 2 1 4 4 H 1.09005 * 110.01520 * 53.60259 * 3 2 1 5 5 C 1.54264 * 110.03140 * 292.16677 * 3 2 1 6 6 C 1.54891 * 104.19308 * 264.32514 * 5 3 2 7 7 C 1.54893 * 102.74550 * 322.05329 * 6 5 3 8 8 C 1.53870 * 110.03684 * 174.99724 * 3 2 1 9 9 H 1.09005 * 110.02818 * 359.94810 * 8 3 2 10 10 C 1.50706 * 110.03212 * 238.57110 * 8 3 2 11 11 O 1.20824 * 120.00104 * 359.97438 * 10 8 3 12 12 O 1.34230 * 119.99717 * 180.02562 * 10 8 3 13 13 C 1.45199 * 116.99614 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.47075 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.47127 * 300.00189 * 14 13 12 16 16 C 1.52999 * 109.47317 * 59.99699 * 14 13 12 17 17 C 1.50697 * 109.47466 * 179.97438 * 14 13 12 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 14 13 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.46838 * 89.99826 * 21 19 17 23 23 H 1.48497 * 109.47419 * 209.99978 * 21 19 17 24 24 H 1.48499 * 109.47011 * 330.00539 * 21 19 17 25 25 H 1.09000 * 109.47353 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47366 * 300.00448 * 1 2 3 27 27 H 1.09004 * 109.46624 * 60.00197 * 1 2 3 28 28 H 1.08996 * 109.47366 * 239.99552 * 2 1 3 29 29 H 1.09004 * 109.46624 * 119.99803 * 2 1 3 30 30 H 1.09007 * 110.48992 * 22.99954 * 5 3 2 31 31 H 1.08998 * 110.49251 * 145.64205 * 5 3 2 32 32 H 1.08994 * 110.76170 * 80.37062 * 6 5 3 33 33 H 1.08999 * 110.75638 * 203.55974 * 6 5 3 34 34 H 1.08998 * 110.48842 * 279.26234 * 7 6 5 35 35 H 1.09001 * 110.48134 * 156.62179 * 7 6 5 36 36 H 1.09002 * 109.47177 * 299.99820 * 13 12 10 37 37 H 1.09001 * 109.47399 * 59.99991 * 13 12 10 38 38 H 1.08993 * 109.46955 * 60.00011 * 15 14 13 39 39 H 1.09000 * 109.47050 * 179.97438 * 15 14 13 40 40 H 1.09001 * 109.47002 * 299.99574 * 15 14 13 41 41 H 1.09002 * 109.46716 * 60.00091 * 16 14 13 42 42 H 1.09000 * 109.47486 * 180.02562 * 16 14 13 43 43 H 1.09001 * 109.47362 * 300.00732 * 16 14 13 44 44 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5915 1.9968 0.8244 5 6 1.7007 2.1229 -1.3422 6 6 2.9864 1.9542 -2.1893 7 6 4.1125 2.1494 -1.1439 8 6 3.5735 1.4593 0.1261 9 1 3.9543 0.4398 0.1882 10 6 3.9823 2.2381 1.3498 11 8 3.1398 2.7356 2.0587 12 8 5.2825 2.3799 1.6517 13 6 5.6028 3.1430 2.8447 14 6 7.1213 3.1953 3.0244 15 6 7.6673 1.7731 3.1668 16 6 7.7564 3.8655 1.8044 17 6 7.4538 3.9879 4.2622 18 1 6.6612 4.4116 4.8612 19 6 8.7697 4.1712 4.6307 20 7 9.7347 3.6548 3.9016 21 14 9.1818 5.1543 6.1647 22 1 9.2402 4.2429 7.3358 23 1 10.4982 5.8184 5.9883 24 1 8.1346 6.1828 6.3897 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 0.8595 1.6224 -1.8218 31 1 1.4804 3.1794 -1.1894 32 1 3.0333 0.9566 -2.6259 33 1 3.0401 2.7170 -2.9660 34 1 4.2818 3.2102 -0.9591 35 1 5.0314 1.6682 -1.4788 36 1 5.2135 4.1561 2.7434 37 1 5.1507 2.6653 3.7139 38 1 7.4269 1.2003 2.2712 39 1 8.7492 1.8103 3.2943 40 1 7.2149 1.2956 4.0359 41 1 7.3675 4.8787 1.7029 42 1 8.8383 3.9024 1.9322 43 1 7.5159 3.2927 0.9088 44 1 10.6605 3.7835 4.1610 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835302723.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:58 Heat of formation + Delta-G solvation = -125.113331 kcal Electronic energy + Delta-G solvation = -21445.128541 eV Core-core repulsion = 18361.113973 eV Total energy + Delta-G solvation = -3084.014568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.37047 -38.29052 -36.36273 -34.80588 -33.13625 -31.27469 -29.63938 -27.66276 -25.73682 -25.60580 -25.09353 -23.44167 -21.75667 -20.26707 -19.10801 -18.81398 -17.35061 -16.13372 -15.93453 -15.76150 -15.41298 -14.87784 -14.54270 -13.82688 -13.50615 -13.24201 -12.96158 -12.90232 -12.69803 -12.09618 -11.89759 -11.64571 -11.55477 -11.39216 -11.16923 -11.06139 -10.96066 -10.84238 -10.79377 -10.70352 -10.55711 -10.46670 -10.39879 -10.17916 -9.86859 -9.85076 -9.38934 -9.27400 -8.74456 -8.36873 -6.01206 -4.12730 2.67560 3.26524 3.28282 3.35144 3.40495 4.35992 4.39160 4.49495 4.71694 5.05118 5.06811 5.15474 5.25135 5.31044 5.36154 5.49878 5.54164 5.54795 5.62768 5.72288 5.81350 5.88708 5.94219 6.02330 6.08669 6.12653 6.13537 6.22225 6.24154 6.41139 6.49358 6.77339 6.99697 7.11576 7.15473 7.18886 7.42356 7.63555 7.70820 8.06154 8.17099 8.31484 8.41489 8.87237 9.52713 10.99973 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.036756 B = 0.003972 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.597127 B = 7048.351368 C = 7324.743352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.092 4.092 4 H 0.097 0.903 5 C -0.121 4.121 6 C -0.124 4.124 7 C -0.111 4.111 8 C -0.084 4.084 9 H 0.106 0.894 10 C 0.458 3.542 11 O -0.521 6.521 12 O -0.346 6.346 13 C 0.084 3.916 14 C 0.070 3.930 15 C -0.129 4.129 16 C -0.128 4.128 17 C -0.512 4.512 18 H 0.056 0.944 19 C 0.068 3.932 20 N -0.882 5.882 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.016 0.984 39 H 0.084 0.916 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.084 0.916 43 H 0.016 0.984 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.738 -6.156 -11.388 18.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.110 4.110 4 H 0.116 0.884 5 C -0.158 4.158 6 C -0.161 4.161 7 C -0.148 4.148 8 C -0.104 4.104 9 H 0.124 0.876 10 C 0.301 3.699 11 O -0.410 6.410 12 O -0.262 6.262 13 C 0.011 3.989 14 C 0.069 3.931 15 C -0.186 4.186 16 C -0.186 4.186 17 C -0.550 4.550 18 H 0.074 0.926 19 C -0.133 4.133 20 N -0.520 5.520 21 Si 0.723 3.277 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.035 0.965 39 H 0.102 0.898 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.102 0.898 43 H 0.036 0.964 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.734 -5.994 -11.143 17.951 hybrid contribution 0.231 0.613 1.110 1.289 sum -12.503 -5.381 -10.033 16.910 Atomic orbital electron populations 1.21811 0.95769 1.01368 1.01999 1.21595 0.96003 0.95781 1.01942 1.21888 0.92474 0.97074 0.99578 0.88447 1.22476 0.97766 1.00692 0.94899 1.22511 0.94490 1.01740 0.97359 1.22293 0.98683 1.01197 0.92657 1.21730 0.96913 1.00156 0.91557 0.87587 1.23521 0.81763 0.78445 0.86145 1.90578 1.52472 1.46810 1.51188 1.86529 1.25373 1.67714 1.46558 1.23649 1.00171 0.93010 0.82091 1.18238 0.85386 0.94365 0.95065 1.21762 1.04227 0.95896 0.96757 1.21757 1.04244 0.97130 0.95466 1.20947 0.92289 1.33315 1.08459 0.92555 1.24856 0.96179 0.95509 0.96798 1.69835 0.99546 1.44634 1.38030 0.86546 0.77763 0.80229 0.83183 1.20642 1.21144 1.19907 0.92915 0.92612 0.92560 0.91875 0.91918 0.91114 0.91531 0.91279 0.91302 0.90968 0.90251 0.92686 0.92693 0.96464 0.89762 0.95902 0.95908 0.89773 0.96449 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.75 37.16 0.36 -0.95 16 2 C -0.12 -1.13 5.11 -26.73 -0.14 -1.26 16 3 C -0.09 -1.07 2.53 -89.51 -0.23 -1.30 16 4 H 0.10 1.38 6.40 -51.93 -0.33 1.05 16 5 C -0.12 -1.19 6.21 -25.07 -0.16 -1.34 16 6 C -0.12 -1.14 6.91 -24.74 -0.17 -1.31 16 7 C -0.11 -1.30 6.34 -25.07 -0.16 -1.46 16 8 C -0.08 -1.12 3.06 -90.66 -0.28 -1.40 16 9 H 0.11 1.27 7.67 -51.93 -0.40 0.87 16 10 C 0.46 8.26 7.10 36.01 0.26 8.52 16 11 O -0.52 -10.61 14.96 -18.75 -0.28 -10.89 16 12 O -0.35 -7.05 8.86 -39.26 -0.35 -7.39 16 13 C 0.08 1.90 4.26 37.16 0.16 2.06 16 14 C 0.07 1.73 0.58 -155.66 -0.09 1.64 16 15 C -0.13 -3.14 8.11 37.16 0.30 -2.84 16 16 C -0.13 -3.12 8.11 37.16 0.30 -2.82 16 17 C -0.51 -13.84 8.01 -34.44 -0.28 -14.12 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 20 N -0.88 -24.09 9.35 55.43 0.52 -23.57 16 21 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.44 6.55 -51.93 -0.34 0.10 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.59 6.27 -51.92 -0.33 0.26 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.95 7.85 -51.93 -0.41 0.54 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.05 1.26 8.13 -51.93 -0.42 0.84 16 37 H 0.05 1.26 8.13 -51.93 -0.42 0.84 16 38 H 0.02 0.37 7.68 -51.93 -0.40 -0.02 16 39 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 43 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 44 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 341.22 15.07 5.14 5.14 Total: -1.00 -28.46 341.22 -8.04 -36.50 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -7.85 Total: -0.90 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -0.20 Total: -14.83 kcal Atomic # 7 Polarization: -24.09 SS G_CDS: 0.52 Total: -23.57 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.63 Total: -18.29 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.46 -8.04 -36.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835302723.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.611 kcal (2) G-P(sol) polarization free energy of solvation -28.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds