Wall clock time and date at job start Mon Mar 30 2020 00:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47538 * 2 1 4 4 H 1.09005 * 110.01520 * 53.60259 * 3 2 1 5 5 C 1.54264 * 110.03140 * 292.16677 * 3 2 1 6 6 C 1.54891 * 104.19308 * 264.32514 * 5 3 2 7 7 C 1.54893 * 102.74550 * 322.05329 * 6 5 3 8 8 C 1.53870 * 110.03684 * 174.99724 * 3 2 1 9 9 H 1.09005 * 110.02818 * 359.94810 * 8 3 2 10 10 C 1.50706 * 110.03212 * 238.57110 * 8 3 2 11 11 O 1.20824 * 120.00104 * 359.97438 * 10 8 3 12 12 O 1.34230 * 119.99717 * 180.02562 * 10 8 3 13 13 C 1.45199 * 116.99614 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.47075 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.47127 * 300.00189 * 14 13 12 16 16 C 1.52999 * 109.47317 * 59.99699 * 14 13 12 17 17 C 1.50697 * 109.47466 * 179.97438 * 14 13 12 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 14 13 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.46838 * 89.99826 * 21 19 17 23 23 H 1.48497 * 109.47419 * 209.99978 * 21 19 17 24 24 H 1.48499 * 109.47011 * 330.00539 * 21 19 17 25 25 H 1.09000 * 109.47353 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47366 * 300.00448 * 1 2 3 27 27 H 1.09004 * 109.46624 * 60.00197 * 1 2 3 28 28 H 1.08996 * 109.47366 * 239.99552 * 2 1 3 29 29 H 1.09004 * 109.46624 * 119.99803 * 2 1 3 30 30 H 1.09007 * 110.48992 * 22.99954 * 5 3 2 31 31 H 1.08998 * 110.49251 * 145.64205 * 5 3 2 32 32 H 1.08994 * 110.76170 * 80.37062 * 6 5 3 33 33 H 1.08999 * 110.75638 * 203.55974 * 6 5 3 34 34 H 1.08998 * 110.48842 * 279.26234 * 7 6 5 35 35 H 1.09001 * 110.48134 * 156.62179 * 7 6 5 36 36 H 1.09002 * 109.47177 * 299.99820 * 13 12 10 37 37 H 1.09001 * 109.47399 * 59.99991 * 13 12 10 38 38 H 1.08993 * 109.46955 * 60.00011 * 15 14 13 39 39 H 1.09000 * 109.47050 * 179.97438 * 15 14 13 40 40 H 1.09001 * 109.47002 * 299.99574 * 15 14 13 41 41 H 1.09002 * 109.46716 * 60.00091 * 16 14 13 42 42 H 1.09000 * 109.47486 * 180.02562 * 16 14 13 43 43 H 1.09001 * 109.47362 * 300.00732 * 16 14 13 44 44 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5915 1.9968 0.8244 5 6 1.7007 2.1229 -1.3422 6 6 2.9864 1.9542 -2.1893 7 6 4.1125 2.1494 -1.1439 8 6 3.5735 1.4593 0.1261 9 1 3.9543 0.4398 0.1882 10 6 3.9823 2.2381 1.3498 11 8 3.1398 2.7356 2.0587 12 8 5.2825 2.3799 1.6517 13 6 5.6028 3.1430 2.8447 14 6 7.1213 3.1953 3.0244 15 6 7.6673 1.7731 3.1668 16 6 7.7564 3.8655 1.8044 17 6 7.4538 3.9879 4.2622 18 1 6.6612 4.4116 4.8612 19 6 8.7697 4.1712 4.6307 20 7 9.7347 3.6548 3.9016 21 14 9.1818 5.1543 6.1647 22 1 9.2402 4.2429 7.3358 23 1 10.4982 5.8184 5.9883 24 1 8.1346 6.1828 6.3897 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 0.8595 1.6224 -1.8218 31 1 1.4804 3.1794 -1.1894 32 1 3.0333 0.9566 -2.6259 33 1 3.0401 2.7170 -2.9660 34 1 4.2818 3.2102 -0.9591 35 1 5.0314 1.6682 -1.4788 36 1 5.2135 4.1561 2.7434 37 1 5.1507 2.6653 3.7139 38 1 7.4269 1.2003 2.2712 39 1 8.7492 1.8103 3.2943 40 1 7.2149 1.2956 4.0359 41 1 7.3675 4.8787 1.7029 42 1 8.8383 3.9024 1.9322 43 1 7.5159 3.2927 0.9088 44 1 10.6605 3.7835 4.1610 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835302723.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:57 Heat of formation + Delta-G solvation = -137.552100 kcal Electronic energy + Delta-G solvation = -21445.667926 eV Core-core repulsion = 18361.113973 eV Total energy + Delta-G solvation = -3084.553954 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.77192 -39.47051 -38.03820 -36.61109 -33.93698 -33.27318 -30.68000 -28.48281 -27.59246 -27.57038 -27.06381 -24.42768 -22.87023 -21.35193 -20.71620 -20.10948 -18.75763 -17.77821 -17.57375 -17.37084 -16.71684 -16.32645 -15.78713 -15.01876 -14.81119 -14.71939 -14.43441 -14.18728 -13.77921 -13.58774 -13.34610 -13.19268 -12.85996 -12.79646 -12.70409 -12.59419 -12.35178 -12.29838 -12.15124 -11.87043 -11.75603 -11.74390 -11.68998 -11.53568 -11.33364 -11.29485 -11.22119 -11.03497 -10.75449 -10.41942 -8.06168 -6.24528 1.21624 1.42008 1.43547 1.52520 1.82607 2.44338 3.17036 3.42436 3.60403 3.71022 4.10128 4.22946 4.24622 4.26969 4.29481 4.39522 4.47853 4.55901 4.59121 4.73512 4.76764 4.80793 4.84718 4.90990 5.02546 5.08555 5.13052 5.16532 5.18260 5.20961 5.23462 5.30552 5.35355 5.44229 5.48440 5.54434 5.60046 5.61944 5.68196 6.05680 6.15881 6.35398 6.75505 6.82994 7.43481 8.93501 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.036756 B = 0.003972 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.597127 B = 7048.351368 C = 7324.743352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.091 4.091 4 H 0.066 0.934 5 C -0.118 4.118 6 C -0.113 4.113 7 C -0.113 4.113 8 C -0.081 4.081 9 H 0.124 0.876 10 C 0.453 3.547 11 O -0.548 6.548 12 O -0.350 6.350 13 C 0.096 3.904 14 C 0.061 3.939 15 C -0.117 4.117 16 C -0.116 4.116 17 C -0.536 4.536 18 H 0.047 0.953 19 C 0.029 3.971 20 N -0.899 5.899 21 Si 0.953 3.047 22 H -0.276 1.276 23 H -0.280 1.280 24 H -0.274 1.274 25 H 0.065 0.935 26 H 0.041 0.959 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.032 0.968 39 H 0.064 0.936 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.064 0.936 43 H 0.033 0.967 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.412 -7.082 -12.913 19.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.110 4.110 4 H 0.085 0.915 5 C -0.156 4.156 6 C -0.151 4.151 7 C -0.151 4.151 8 C -0.100 4.100 9 H 0.142 0.858 10 C 0.298 3.702 11 O -0.440 6.440 12 O -0.266 6.266 13 C 0.022 3.978 14 C 0.061 3.939 15 C -0.175 4.175 16 C -0.174 4.174 17 C -0.574 4.574 18 H 0.065 0.935 19 C -0.171 4.171 20 N -0.537 5.537 21 Si 0.779 3.221 22 H -0.202 1.202 23 H -0.205 1.205 24 H -0.199 1.199 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.083 0.917 43 H 0.052 0.948 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.416 -6.927 -12.679 19.717 hybrid contribution 0.402 0.892 1.573 1.852 sum -13.014 -6.035 -11.106 18.143 Atomic orbital electron populations 1.21806 0.94912 1.02189 1.01925 1.21590 0.96749 0.94225 1.02464 1.21890 0.91015 0.98394 0.99674 0.91519 1.22477 0.99027 1.00082 0.93967 1.22505 0.92472 1.03447 0.96635 1.22353 1.00249 0.99852 0.92604 1.21985 0.98205 1.00176 0.89587 0.85782 1.24594 0.80476 0.78056 0.87053 1.90568 1.52834 1.48094 1.52462 1.86526 1.27145 1.67498 1.45432 1.23223 0.98797 0.92782 0.82949 1.18267 0.86707 0.94364 0.94608 1.21608 1.02682 0.95887 0.97318 1.21599 1.02696 0.97152 0.95967 1.21199 0.92508 1.34203 1.09530 0.93470 1.25506 0.96014 0.96299 0.99295 1.69938 0.99729 1.44989 1.39000 0.85645 0.77529 0.78927 0.80048 1.20222 1.20506 1.19903 0.91641 0.93984 0.91390 0.89783 0.92929 0.88915 0.92649 0.89115 0.90069 0.92931 0.89237 0.93676 0.93614 0.94860 0.91723 0.96271 0.96304 0.91736 0.94839 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.75 71.98 0.70 -1.58 16 2 C -0.11 -1.94 5.11 30.59 0.16 -1.79 16 3 C -0.09 -2.01 2.53 -10.07 -0.03 -2.04 16 4 H 0.07 1.91 6.40 -2.38 -0.02 1.89 16 5 C -0.12 -2.04 6.21 31.67 0.20 -1.84 16 6 C -0.11 -1.72 6.91 31.89 0.22 -1.50 16 7 C -0.11 -2.43 6.34 31.67 0.20 -2.23 16 8 C -0.08 -2.03 3.06 -10.82 -0.03 -2.06 16 9 H 0.12 2.69 7.67 -2.38 -0.02 2.68 16 10 C 0.45 16.39 7.10 71.24 0.51 16.89 16 11 O -0.55 -22.92 14.96 21.97 0.33 -22.59 16 12 O -0.35 -14.24 8.86 -51.42 -0.46 -14.70 16 13 C 0.10 4.44 4.26 71.98 0.31 4.74 16 14 C 0.06 3.05 0.58 -52.93 -0.03 3.02 16 15 C -0.12 -5.72 8.11 71.98 0.58 -5.14 16 16 C -0.12 -5.67 8.11 71.98 0.58 -5.09 16 17 C -0.54 -29.38 8.01 25.60 0.21 -29.17 16 18 H 0.05 2.60 7.74 -2.91 -0.02 2.58 16 19 C 0.03 1.56 5.15 84.65 0.44 2.00 16 20 N -0.90 -49.20 9.35 21.45 0.20 -49.00 16 21 Si 0.95 43.02 29.54 68.60 2.03 45.04 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.86 6.55 -2.38 -0.02 0.84 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.09 1.21 6.27 -2.38 -0.01 1.19 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 1.34 7.85 -2.39 -0.02 1.32 16 35 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.04 2.13 8.13 -2.39 -0.02 2.11 16 37 H 0.05 2.16 8.13 -2.39 -0.02 2.14 16 38 H 0.03 1.46 7.68 -2.39 -0.02 1.44 16 39 H 0.06 3.41 6.07 -2.39 -0.01 3.39 16 40 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.06 3.40 6.07 -2.39 -0.01 3.38 16 43 H 0.03 1.47 7.68 -2.39 -0.02 1.45 16 44 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -61.21 341.22 7.05 -54.16 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.95 Total: 12.87 kcal Atomic # 6 Polarization: -29.78 SS G_CDS: 4.01 Total: -25.78 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.20 Total: -49.00 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -0.13 Total: -37.29 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -61.21 7.05 -54.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835302723.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.396 kcal (2) G-P(sol) polarization free energy of solvation -61.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds