Wall clock time and date at job start Mon Mar 30 2020 00:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47187 * 2 1 4 4 C 1.50702 * 109.46762 * 240.00213 * 2 1 3 5 5 H 1.07994 * 119.99881 * 239.99967 * 4 2 1 6 6 C 1.37884 * 119.99926 * 60.00263 * 4 2 1 7 7 N 1.31509 * 120.00171 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99499 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47238 * 90.00072 * 8 6 4 10 10 H 1.48503 * 109.46710 * 209.99580 * 8 6 4 11 11 H 1.48492 * 109.47572 * 329.99487 * 8 6 4 12 12 C 1.52992 * 109.46999 * 120.00516 * 2 1 3 13 13 O 1.45206 * 109.47350 * 299.99459 * 12 2 1 14 14 C 1.34223 * 117.00556 * 180.02562 * 13 12 2 15 15 O 1.20831 * 119.99867 * 0.02562 * 14 13 12 16 16 C 1.50694 * 120.00406 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47184 * 60.00087 * 16 14 13 18 18 C 1.53006 * 109.46950 * 299.99821 * 16 14 13 19 19 C 1.53001 * 109.47475 * 180.02562 * 16 14 13 20 20 C 1.53779 * 113.61748 * 182.77164 * 19 16 14 21 21 C 1.53781 * 87.08166 * 139.97656 * 20 19 16 22 22 C 1.53779 * 87.08241 * 334.57068 * 21 20 19 23 23 H 1.08997 * 109.46562 * 300.00000 * 1 2 3 24 24 H 1.08997 * 109.47060 * 59.99288 * 1 2 3 25 25 H 1.08996 * 109.47115 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46606 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47189 * 300.00402 * 3 2 1 28 28 H 1.08995 * 109.46880 * 60.00368 * 3 2 1 29 29 H 0.96998 * 120.00523 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.47158 * 179.97438 * 12 2 1 31 31 H 1.08996 * 109.47691 * 59.99736 * 12 2 1 32 32 H 1.09000 * 109.47435 * 173.40550 * 17 16 14 33 33 H 1.09007 * 109.47155 * 293.39749 * 17 16 14 34 34 H 1.08992 * 109.47213 * 53.39797 * 17 16 14 35 35 H 1.08990 * 109.47351 * 296.36671 * 18 16 14 36 36 H 1.09007 * 109.46853 * 56.36636 * 18 16 14 37 37 H 1.09003 * 109.46995 * 176.36137 * 18 16 14 38 38 H 1.08999 * 112.90546 * 51.51955 * 19 16 14 39 39 H 1.09004 * 113.60978 * 25.42931 * 20 19 16 40 40 H 1.09001 * 113.69094 * 254.54095 * 20 19 16 41 41 H 1.09002 * 113.60973 * 89.11517 * 21 20 19 42 42 H 1.08997 * 113.61873 * 220.01948 * 21 20 19 43 43 H 1.09000 * 113.61784 * 139.98074 * 22 21 20 44 44 H 1.08999 * 113.61694 * 270.87830 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3425 -2.1615 -4.4119 10 1 2.4864 -0.1412 -5.1123 11 1 3.6291 -1.7583 -3.7124 12 6 2.0400 -0.7213 1.2491 13 8 1.5561 -0.0369 2.4348 14 6 1.9171 -0.5467 3.6228 15 8 2.6149 -1.5320 3.6705 16 6 1.4523 0.1098 4.8971 17 6 -0.0769 0.1078 4.9435 18 6 1.9622 1.5517 4.9434 19 6 2.0005 -0.6631 6.0984 20 6 1.5269 -0.1120 7.4537 21 6 1.3860 -1.5738 7.9100 22 6 1.2040 -1.9369 6.4269 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6768 1.9563 0.8900 29 1 0.7081 1.1611 -3.4843 30 1 3.1300 -0.7217 1.2489 31 1 1.6767 -1.7490 1.2491 32 1 -0.4115 0.4748 5.9138 33 1 -0.4652 0.7548 4.1568 34 1 -0.4436 -0.9075 4.7929 35 1 3.0516 1.5510 4.9755 36 1 1.6252 2.0849 4.0543 37 1 1.5727 2.0464 5.8332 38 1 3.0773 -0.8232 6.0444 39 1 0.5782 0.4221 7.4004 40 1 2.2948 0.4420 7.9937 41 1 2.2949 -1.9829 8.3513 42 1 0.4996 -1.7584 8.5168 43 1 1.7121 -2.8566 6.1369 44 1 0.1670 -1.9018 6.0928 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835304213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:25 Heat of formation + Delta-G solvation = -88.470909 kcal Electronic energy + Delta-G solvation = -21805.794230 eV Core-core repulsion = 18723.368597 eV Total energy + Delta-G solvation = -3082.425634 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.66373 -38.84766 -36.43081 -34.80550 -34.02878 -31.20948 -27.59556 -25.99757 -25.75640 -25.60206 -25.32999 -25.11273 -22.94977 -20.16892 -18.80412 -18.43719 -16.85907 -16.41017 -15.75625 -15.70630 -15.21456 -14.98631 -14.65776 -13.68997 -13.42044 -13.08973 -12.95825 -12.69306 -12.61326 -12.18529 -11.97616 -11.78132 -11.67607 -11.44520 -11.35236 -11.18998 -11.11669 -10.94089 -10.69761 -10.44011 -10.40282 -10.37638 -10.18119 -10.13246 -9.84588 -9.76853 -9.37670 -9.24208 -8.73833 -8.36550 -6.00849 -4.12269 2.72049 3.26069 3.28416 3.35290 3.40532 4.38627 4.49476 4.52682 4.63707 4.77567 4.95945 5.00359 5.18972 5.25514 5.38351 5.51140 5.60802 5.68585 5.73005 5.77164 5.80725 5.87186 5.93748 6.01723 6.13468 6.14210 6.17215 6.23374 6.25416 6.48339 6.50665 6.78268 7.00209 7.12812 7.15767 7.20227 7.43161 7.64028 7.71191 8.06629 8.17825 8.34473 8.42852 8.87694 9.53124 11.00310 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.040437 B = 0.004193 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.270353 B = 6675.574945 C = 6910.099692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.070 3.930 3 C -0.128 4.128 4 C -0.512 4.512 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.084 3.916 13 O -0.346 6.346 14 C 0.461 3.539 15 O -0.519 6.519 16 C -0.045 4.045 17 C -0.144 4.144 18 C -0.139 4.139 19 C -0.089 4.089 20 C -0.135 4.135 21 C -0.142 4.142 22 C -0.140 4.140 23 H 0.016 0.984 24 H 0.083 0.917 25 H 0.021 0.979 26 H 0.022 0.978 27 H 0.083 0.917 28 H 0.016 0.984 29 H 0.260 0.740 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.426 0.765 17.499 17.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.070 3.930 3 C -0.186 4.186 4 C -0.550 4.550 5 H 0.074 0.926 6 C -0.133 4.133 7 N -0.520 5.520 8 Si 0.722 3.278 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.011 3.989 13 O -0.261 6.261 14 C 0.304 3.696 15 O -0.408 6.408 16 C -0.046 4.046 17 C -0.201 4.201 18 C -0.197 4.197 19 C -0.107 4.107 20 C -0.172 4.172 21 C -0.179 4.179 22 C -0.177 4.177 23 H 0.035 0.965 24 H 0.102 0.898 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.102 0.898 28 H 0.035 0.965 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.297 0.593 17.302 17.361 hybrid contribution 0.538 -0.713 -0.993 1.335 sum -0.759 -0.120 16.310 16.328 Atomic orbital electron populations 1.21755 0.97345 0.98861 1.00608 1.18233 0.93394 0.93057 0.88344 1.21751 0.98004 0.98201 1.00604 1.20950 1.31919 1.12247 0.89875 0.92579 1.24850 0.94825 0.94896 0.98749 1.69826 1.36373 1.22583 1.23257 0.86552 0.79291 0.79391 0.82524 1.20649 1.21151 1.19919 1.23626 0.98052 0.95724 0.81480 1.86513 1.69003 1.55751 1.14844 1.23504 0.77413 0.82388 0.86284 1.90596 1.35971 1.25938 1.88310 1.20412 0.97695 0.96739 0.89772 1.21976 0.92143 1.02953 1.03006 1.21817 1.01366 0.93223 1.03270 1.22452 1.00540 0.95829 0.91923 1.23027 1.01670 0.96587 0.95938 1.22785 1.01723 0.96696 0.96721 1.23062 1.00922 0.98139 0.95591 0.96467 0.89794 0.95937 0.95927 0.89793 0.96471 0.92934 0.92772 0.92777 0.91205 0.90884 0.91926 0.92310 0.90841 0.91374 0.88605 0.89634 0.91523 0.90407 0.91603 0.91278 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.11 37.16 0.30 -2.80 16 2 C 0.07 1.73 0.58 -155.66 -0.09 1.64 16 3 C -0.13 -3.10 8.11 37.16 0.30 -2.80 16 4 C -0.51 -13.82 8.01 -34.44 -0.28 -14.10 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.84 5.15 -17.82 -0.09 1.75 16 7 N -0.88 -24.04 9.35 55.43 0.52 -23.52 16 8 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 C 0.08 1.91 4.26 37.15 0.16 2.07 16 13 O -0.35 -6.99 8.64 -39.24 -0.34 -7.32 16 14 C 0.46 8.34 6.51 36.00 0.23 8.57 16 15 O -0.52 -10.63 15.55 -18.75 -0.29 -10.92 16 16 C -0.05 -0.60 0.62 -155.66 -0.10 -0.69 16 17 C -0.14 -1.67 7.38 37.16 0.27 -1.40 16 18 C -0.14 -1.64 8.20 37.16 0.30 -1.33 16 19 C -0.09 -1.06 2.44 -89.81 -0.22 -1.27 16 20 C -0.14 -1.21 6.69 -25.92 -0.17 -1.38 16 21 C -0.14 -1.28 8.08 -25.92 -0.21 -1.49 16 22 C -0.14 -1.59 7.19 -25.92 -0.19 -1.78 16 23 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 24 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 28 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 29 H 0.26 6.80 8.31 -40.82 -0.34 6.47 16 30 H 0.05 1.25 8.13 -51.93 -0.42 0.83 16 31 H 0.05 1.25 8.13 -51.93 -0.42 0.82 16 32 H 0.07 0.63 6.09 -51.93 -0.32 0.31 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.75 6.47 -51.93 -0.34 0.41 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.94 8.03 -51.92 -0.42 0.52 16 37 H 0.07 0.63 7.66 -51.93 -0.40 0.23 16 38 H 0.10 1.26 7.95 -51.93 -0.41 0.85 16 39 H 0.09 0.69 6.14 -51.93 -0.32 0.37 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 0.94 5.67 -51.93 -0.29 0.65 16 LS Contribution 338.71 15.07 5.10 5.10 Total: -1.00 -28.50 338.71 -7.49 -35.98 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.69 Total: -0.25 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 0.23 Total: -15.01 kcal Atomic # 7 Polarization: -24.04 SS G_CDS: 0.52 Total: -23.52 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.63 Total: -18.24 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.50 -7.49 -35.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835304213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.488 kcal (2) G-P(sol) polarization free energy of solvation -28.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds