Wall clock time and date at job start Mon Mar 30 2020 00:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47187 * 2 1 4 4 C 1.50702 * 109.46762 * 240.00213 * 2 1 3 5 5 H 1.07994 * 119.99881 * 239.99967 * 4 2 1 6 6 C 1.37884 * 119.99926 * 60.00263 * 4 2 1 7 7 N 1.31509 * 120.00171 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99499 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47238 * 90.00072 * 8 6 4 10 10 H 1.48503 * 109.46710 * 209.99580 * 8 6 4 11 11 H 1.48492 * 109.47572 * 329.99487 * 8 6 4 12 12 C 1.52992 * 109.46999 * 120.00516 * 2 1 3 13 13 O 1.45206 * 109.47350 * 299.99459 * 12 2 1 14 14 C 1.34223 * 117.00556 * 180.02562 * 13 12 2 15 15 O 1.20831 * 119.99867 * 0.02562 * 14 13 12 16 16 C 1.50694 * 120.00406 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47184 * 60.00087 * 16 14 13 18 18 C 1.53006 * 109.46950 * 299.99821 * 16 14 13 19 19 C 1.53001 * 109.47475 * 180.02562 * 16 14 13 20 20 C 1.53779 * 113.61748 * 182.77164 * 19 16 14 21 21 C 1.53781 * 87.08166 * 139.97656 * 20 19 16 22 22 C 1.53779 * 87.08241 * 334.57068 * 21 20 19 23 23 H 1.08997 * 109.46562 * 300.00000 * 1 2 3 24 24 H 1.08997 * 109.47060 * 59.99288 * 1 2 3 25 25 H 1.08996 * 109.47115 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46606 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47189 * 300.00402 * 3 2 1 28 28 H 1.08995 * 109.46880 * 60.00368 * 3 2 1 29 29 H 0.96998 * 120.00523 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.47158 * 179.97438 * 12 2 1 31 31 H 1.08996 * 109.47691 * 59.99736 * 12 2 1 32 32 H 1.09000 * 109.47435 * 173.40550 * 17 16 14 33 33 H 1.09007 * 109.47155 * 293.39749 * 17 16 14 34 34 H 1.08992 * 109.47213 * 53.39797 * 17 16 14 35 35 H 1.08990 * 109.47351 * 296.36671 * 18 16 14 36 36 H 1.09007 * 109.46853 * 56.36636 * 18 16 14 37 37 H 1.09003 * 109.46995 * 176.36137 * 18 16 14 38 38 H 1.08999 * 112.90546 * 51.51955 * 19 16 14 39 39 H 1.09004 * 113.60978 * 25.42931 * 20 19 16 40 40 H 1.09001 * 113.69094 * 254.54095 * 20 19 16 41 41 H 1.09002 * 113.60973 * 89.11517 * 21 20 19 42 42 H 1.08997 * 113.61873 * 220.01948 * 21 20 19 43 43 H 1.09000 * 113.61784 * 139.98074 * 22 21 20 44 44 H 1.08999 * 113.61694 * 270.87830 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3425 -2.1615 -4.4119 10 1 2.4864 -0.1412 -5.1123 11 1 3.6291 -1.7583 -3.7124 12 6 2.0400 -0.7213 1.2491 13 8 1.5561 -0.0369 2.4348 14 6 1.9171 -0.5467 3.6228 15 8 2.6149 -1.5320 3.6705 16 6 1.4523 0.1098 4.8971 17 6 -0.0769 0.1078 4.9435 18 6 1.9622 1.5517 4.9434 19 6 2.0005 -0.6631 6.0984 20 6 1.5269 -0.1120 7.4537 21 6 1.3860 -1.5738 7.9100 22 6 1.2040 -1.9369 6.4269 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6768 1.9563 0.8900 29 1 0.7081 1.1611 -3.4843 30 1 3.1300 -0.7217 1.2489 31 1 1.6767 -1.7490 1.2491 32 1 -0.4115 0.4748 5.9138 33 1 -0.4652 0.7548 4.1568 34 1 -0.4436 -0.9075 4.7929 35 1 3.0516 1.5510 4.9755 36 1 1.6252 2.0849 4.0543 37 1 1.5727 2.0464 5.8332 38 1 3.0773 -0.8232 6.0444 39 1 0.5782 0.4221 7.4004 40 1 2.2948 0.4420 7.9937 41 1 2.2949 -1.9829 8.3513 42 1 0.4996 -1.7584 8.5168 43 1 1.7121 -2.8566 6.1369 44 1 0.1670 -1.9018 6.0928 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835304213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:24 Heat of formation + Delta-G solvation = -101.267400 kcal Electronic energy + Delta-G solvation = -21806.349128 eV Core-core repulsion = 18723.368597 eV Total energy + Delta-G solvation = -3082.980531 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.94799 -40.04355 -38.15805 -36.58786 -35.06537 -33.22790 -28.50854 -27.73367 -27.58348 -27.17987 -26.66165 -26.14419 -24.27487 -21.37084 -20.69170 -19.45541 -18.30778 -17.83650 -17.58117 -17.29307 -16.69570 -16.08048 -15.98454 -15.05454 -14.96761 -14.76429 -14.18288 -13.97536 -13.73390 -13.55295 -13.28184 -13.22025 -13.00213 -12.83688 -12.78658 -12.64981 -12.54693 -12.33952 -12.30622 -12.14820 -12.08300 -11.72559 -11.47864 -11.33809 -11.29254 -11.21951 -10.96595 -10.88254 -10.73978 -10.41607 -8.05843 -6.24079 1.26489 1.41849 1.43469 1.52371 1.84015 2.44412 3.17304 3.49722 3.64595 3.70587 3.93311 3.98957 4.08474 4.22913 4.24238 4.28560 4.33339 4.58481 4.69062 4.77732 4.84799 4.85214 4.87575 4.92588 4.95634 5.03258 5.04570 5.13381 5.17797 5.20048 5.21551 5.28533 5.30270 5.37164 5.41689 5.60143 5.62674 5.66272 5.69931 6.06454 6.16518 6.36012 6.77324 6.85758 7.43824 8.93753 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.040437 B = 0.004193 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.270353 B = 6675.574945 C = 6910.099692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.061 3.939 3 C -0.116 4.116 4 C -0.536 4.536 5 H 0.046 0.954 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.952 3.048 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.275 1.275 12 C 0.097 3.903 13 O -0.348 6.348 14 C 0.454 3.546 15 O -0.548 6.548 16 C -0.039 4.039 17 C -0.142 4.142 18 C -0.137 4.137 19 C -0.098 4.098 20 C -0.119 4.119 21 C -0.133 4.133 22 C -0.150 4.150 23 H 0.033 0.967 24 H 0.064 0.936 25 H 0.017 0.983 26 H 0.017 0.983 27 H 0.064 0.936 28 H 0.033 0.967 29 H 0.263 0.737 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.044 0.956 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.115 1.536 19.304 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.061 3.939 3 C -0.174 4.174 4 C -0.574 4.574 5 H 0.064 0.936 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.778 3.222 9 H -0.202 1.202 10 H -0.205 1.205 11 H -0.200 1.200 12 C 0.023 3.977 13 O -0.264 6.264 14 C 0.299 3.701 15 O -0.439 6.439 16 C -0.040 4.040 17 C -0.199 4.199 18 C -0.195 4.195 19 C -0.117 4.117 20 C -0.156 4.156 21 C -0.170 4.170 22 C -0.187 4.187 23 H 0.052 0.948 24 H 0.082 0.918 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.123 0.877 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.122 0.878 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.063 0.937 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.990 1.369 19.121 19.273 hybrid contribution 0.767 -0.980 -1.519 1.964 sum -1.222 0.389 17.601 17.648 Atomic orbital electron populations 1.21594 0.96960 0.98453 1.00350 1.18260 0.93707 0.93290 0.88631 1.21591 0.97575 0.97845 1.00342 1.21198 1.32454 1.12469 0.91324 0.93571 1.25491 0.94942 0.95538 1.01078 1.69928 1.36603 1.23182 1.23880 0.85659 0.78670 0.78476 0.79425 1.20229 1.20485 1.19958 1.23189 0.97170 0.95058 0.82269 1.86516 1.69182 1.55666 1.15036 1.24726 0.76514 0.82093 0.86791 1.90580 1.37342 1.27420 1.88537 1.20628 0.98966 0.97365 0.87090 1.22018 0.90452 1.02622 1.04785 1.21850 1.01203 0.92016 1.04388 1.22510 0.99508 0.96633 0.93005 1.23013 1.02705 0.96730 0.93168 1.22756 1.02636 0.96577 0.95033 1.23140 1.00772 0.96905 0.97887 0.94799 0.91756 0.96368 0.96371 0.91750 0.94816 0.92771 0.93866 0.93833 0.87689 0.91604 0.92647 0.92787 0.92029 0.87882 0.90554 0.87840 0.90119 0.90246 0.89829 0.93707 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.11 71.98 0.58 -5.05 16 2 C 0.06 3.08 0.58 -52.93 -0.03 3.05 16 3 C -0.12 -5.64 8.11 71.98 0.58 -5.05 16 4 C -0.54 -29.42 8.01 25.60 0.21 -29.21 16 5 H 0.05 2.55 7.74 -2.91 -0.02 2.53 16 6 C 0.03 1.60 5.15 84.66 0.44 2.04 16 7 N -0.90 -49.11 9.35 21.45 0.20 -48.91 16 8 Si 0.95 43.06 29.54 68.60 2.03 45.09 16 9 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 12 C 0.10 4.48 4.26 71.98 0.31 4.79 16 13 O -0.35 -14.12 8.64 -51.35 -0.44 -14.57 16 14 C 0.45 16.46 6.51 71.23 0.46 16.92 16 15 O -0.55 -23.04 15.55 21.95 0.34 -22.70 16 16 C -0.04 -0.98 0.62 -52.93 -0.03 -1.02 16 17 C -0.14 -2.95 7.38 71.98 0.53 -2.42 16 18 C -0.14 -2.91 8.20 71.98 0.59 -2.32 16 19 C -0.10 -2.17 2.44 -10.27 -0.03 -2.20 16 20 C -0.12 -1.69 6.69 31.12 0.21 -1.48 16 21 C -0.13 -2.02 8.08 31.12 0.25 -1.76 16 22 C -0.15 -3.23 7.19 31.12 0.22 -3.01 16 23 H 0.03 1.48 7.68 -2.39 -0.02 1.46 16 24 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 25 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16 28 H 0.03 1.47 7.68 -2.39 -0.02 1.45 16 29 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 30 H 0.04 2.06 8.13 -2.39 -0.02 2.04 16 31 H 0.04 2.07 8.13 -2.39 -0.02 2.05 16 32 H 0.10 1.44 6.09 -2.39 -0.01 1.43 16 33 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.05 1.23 6.47 -2.39 -0.02 1.22 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.46 8.03 -2.38 -0.02 1.44 16 37 H 0.10 1.47 7.66 -2.39 -0.02 1.45 16 38 H 0.08 1.99 7.95 -2.39 -0.02 1.97 16 39 H 0.10 1.13 6.14 -2.38 -0.01 1.11 16 40 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.09 1.85 5.67 -2.39 -0.01 1.83 16 Total: -1.00 -61.82 338.71 7.37 -54.45 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.95 Total: 13.37 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 4.29 Total: -26.73 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.20 Total: -48.91 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -0.10 Total: -37.27 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -61.82 7.37 -54.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835304213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.821 kcal (2) G-P(sol) polarization free energy of solvation -61.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds