Wall clock time and date at job start Mon Mar 30 2020 01:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 110.43249 * 2 1 4 4 C 1.54885 * 110.49325 * 237.45570 * 2 1 3 5 5 C 1.54885 * 102.75053 * 203.37948 * 4 2 1 6 6 C 1.54265 * 104.19867 * 37.94057 * 5 4 2 7 7 C 1.53882 * 106.59691 * 336.39092 * 6 5 4 8 8 C 1.52995 * 110.03237 * 119.28480 * 7 6 5 9 9 C 1.50704 * 110.03059 * 240.71717 * 7 6 5 10 10 O 1.20820 * 119.99960 * 117.16599 * 9 7 6 11 11 O 1.34227 * 120.00090 * 297.16212 * 9 7 6 12 12 C 1.45197 * 117.00075 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.47178 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.46885 * 300.00004 * 13 12 11 15 15 C 1.52995 * 109.47410 * 59.99755 * 13 12 11 16 16 C 1.50693 * 109.47179 * 180.02562 * 13 12 11 17 17 H 1.08000 * 120.00072 * 1.35194 * 16 13 12 18 18 C 1.37875 * 119.99983 * 181.36090 * 16 13 12 19 19 N 1.31515 * 120.00082 * 193.95939 * 18 16 13 20 20 Si 1.86798 * 120.00237 * 13.95769 * 18 16 13 21 21 H 1.48503 * 109.47385 * 84.55711 * 20 18 16 22 22 H 1.48504 * 109.47517 * 204.55822 * 20 18 16 23 23 H 1.48506 * 109.47068 * 324.55987 * 20 18 16 24 24 H 1.09001 * 109.46889 * 181.08819 * 1 2 3 25 25 H 1.09004 * 109.47002 * 61.10066 * 1 2 3 26 26 H 1.08996 * 109.47820 * 301.09417 * 1 2 3 27 27 H 1.09000 * 110.75250 * 321.69225 * 4 2 1 28 28 H 1.09002 * 110.75968 * 84.87460 * 4 2 1 29 29 H 1.09004 * 110.48620 * 156.61738 * 5 4 2 30 30 H 1.09004 * 110.48693 * 279.12570 * 5 4 2 31 31 H 1.08999 * 110.03518 * 95.67588 * 6 5 4 32 32 H 1.09000 * 110.03408 * 217.06082 * 6 5 4 33 33 H 1.08999 * 109.47254 * 302.83075 * 8 7 6 34 34 H 1.08998 * 109.47018 * 62.83184 * 8 7 6 35 35 H 1.08993 * 109.47178 * 182.83514 * 8 7 6 36 36 H 1.08997 * 109.46803 * 300.00104 * 12 11 9 37 37 H 1.08998 * 109.46876 * 60.00133 * 12 11 9 38 38 H 1.09006 * 109.47231 * 69.31898 * 14 13 12 39 39 H 1.08997 * 109.47131 * 189.31431 * 14 13 12 40 40 H 1.09003 * 109.47395 * 309.31750 * 14 13 12 41 41 H 1.09004 * 109.46845 * 60.00011 * 15 13 12 42 42 H 1.08997 * 109.47539 * 180.02562 * 15 13 12 43 43 H 1.09007 * 109.47484 * 300.00325 * 15 13 12 44 44 H 0.96998 * 120.00090 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0722 -0.7805 -1.2230 5 6 3.4908 -1.1969 -0.7612 6 6 3.3166 -1.5413 0.7324 7 6 2.0699 -0.7802 1.2164 8 6 1.0139 -1.7681 1.7161 9 6 2.4448 0.1768 2.3186 10 8 2.3003 1.3660 2.1612 11 8 2.9394 -0.2919 3.4750 12 6 3.2782 0.6874 4.4921 13 6 3.8227 -0.0297 5.7292 14 6 2.7589 -0.9845 6.2747 15 6 5.0739 -0.8239 5.3489 16 6 4.1738 0.9866 6.7850 17 1 4.0032 2.0371 6.6013 18 6 4.7130 0.5754 7.9855 19 7 4.7654 1.4077 9.0023 20 14 5.3691 -1.1641 8.1677 21 1 6.7680 -1.2200 7.6725 22 1 5.3345 -1.5589 9.5989 23 1 4.5264 -2.0964 7.3765 24 1 -0.3633 -1.0275 0.0195 25 1 -0.3633 0.4967 -0.8997 26 1 -0.3634 0.5307 0.8799 27 1 1.4582 -1.6584 -1.4241 28 1 2.1222 -0.1365 -2.1011 29 1 3.8317 -2.0705 -1.3169 30 1 4.1904 -0.3702 -0.8852 31 1 3.1694 -2.6144 0.8535 32 1 4.1932 -1.2192 1.2945 33 1 0.7682 -2.4709 0.9199 34 1 1.4046 -2.3140 2.5748 35 1 0.1166 -1.2234 2.0094 36 1 4.0363 1.3673 4.1035 37 1 2.3869 1.2534 4.7627 38 1 2.6242 -1.8136 5.5800 39 1 3.0788 -1.3700 7.2428 40 1 1.8159 -0.4501 6.3901 41 1 5.8318 -0.1436 4.9602 42 1 5.4616 -1.3350 6.2301 43 1 4.8196 -1.5590 4.5853 44 1 5.1443 1.1183 9.8470 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835304543.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:55 Heat of formation + Delta-G solvation = -98.368695 kcal Electronic energy + Delta-G solvation = -22024.485435 eV Core-core repulsion = 18941.630601 eV Total energy + Delta-G solvation = -3082.854834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.72238 -38.47936 -36.61299 -35.03995 -31.89281 -31.74095 -31.13648 -26.57410 -26.24415 -25.84798 -25.22038 -24.82736 -22.03860 -20.77540 -19.11968 -18.57712 -17.05072 -16.48729 -15.95940 -15.93090 -15.24183 -14.94422 -14.49674 -14.07767 -13.71226 -13.31092 -13.23742 -12.88305 -12.72761 -12.37215 -12.25711 -12.07358 -11.93822 -11.83598 -11.63098 -11.41474 -11.20310 -10.96520 -10.73556 -10.67691 -10.56801 -10.40966 -10.33485 -10.24259 -10.06302 -9.80005 -9.71776 -9.09565 -8.64820 -8.46678 -6.15976 -4.14119 2.58463 3.14225 3.27005 3.35520 3.40352 4.25208 4.36602 4.40964 4.64621 5.03338 5.13733 5.15195 5.16374 5.18050 5.32018 5.40775 5.43349 5.59994 5.66702 5.72886 5.77788 5.80038 5.81915 5.90924 5.91818 5.99476 6.08957 6.13916 6.16032 6.19019 6.32027 6.34576 6.53646 6.58846 6.71375 6.78342 6.89121 7.09039 7.22801 7.44852 7.70981 8.21916 8.42248 8.86621 9.47627 10.96821 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.034693 B = 0.004782 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.884938 B = 5854.286628 C = 6066.905224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 H 0.093 0.907 4 C -0.118 4.118 5 C -0.125 4.125 6 C -0.112 4.112 7 C -0.054 4.054 8 C -0.138 4.138 9 C 0.464 3.536 10 O -0.515 6.515 11 O -0.350 6.350 12 C 0.093 3.907 13 C 0.043 3.957 14 C -0.139 4.139 15 C -0.145 4.145 16 C -0.519 4.519 17 H 0.075 0.925 18 C 0.078 3.922 19 N -0.890 5.890 20 Si 0.885 3.115 21 H -0.285 1.285 22 H -0.304 1.304 23 H -0.246 1.246 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.031 0.969 39 H 0.054 0.946 40 H 0.042 0.958 41 H 0.048 0.952 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.930 -8.493 -18.637 21.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.103 4.103 3 H 0.111 0.889 4 C -0.155 4.155 5 C -0.163 4.163 6 C -0.149 4.149 7 C -0.055 4.055 8 C -0.195 4.195 9 C 0.307 3.693 10 O -0.404 6.404 11 O -0.266 6.266 12 C 0.020 3.980 13 C 0.042 3.958 14 C -0.196 4.196 15 C -0.202 4.202 16 C -0.556 4.556 17 H 0.093 0.907 18 C -0.125 4.125 19 N -0.527 5.527 20 Si 0.717 3.283 21 H -0.213 1.213 22 H -0.233 1.233 23 H -0.172 1.172 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.907 -8.083 -18.426 20.970 hybrid contribution 0.549 -0.553 0.410 0.880 sum -5.358 -8.635 -18.016 20.684 Atomic orbital electron populations 1.21893 0.94642 1.01902 1.01829 1.22022 0.96010 1.00219 0.92047 0.88857 1.22556 0.96054 0.99733 0.97196 1.22365 0.97299 1.01303 0.95325 1.22217 0.96318 1.00344 0.96064 1.21171 0.97590 0.94747 0.91966 1.21956 0.97730 0.98095 1.01762 1.23467 0.73906 0.88601 0.83349 1.90606 1.50815 1.17981 1.81026 1.86478 1.73222 1.42749 1.24186 1.23383 0.99594 0.89505 0.85544 1.18573 0.91967 0.94360 0.90854 1.22216 0.99069 0.98131 1.00184 1.22282 0.99349 0.99335 0.99237 1.20669 1.43337 0.93829 0.97763 0.90681 1.24911 0.95142 0.97360 0.95038 1.69945 1.44224 1.36486 1.02041 0.87290 0.79646 0.86269 0.75079 1.21255 1.23319 1.17205 0.92088 0.92622 0.92442 0.91264 0.91307 0.91294 0.91461 0.90319 0.90868 0.91290 0.91161 0.91779 0.91985 0.91859 0.94945 0.92754 0.93861 0.93256 0.94210 0.94093 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.00 37.16 0.30 -1.14 16 2 C -0.08 -0.95 2.70 -88.96 -0.24 -1.19 16 3 H 0.09 1.26 6.89 -51.92 -0.36 0.90 16 4 C -0.12 -1.03 6.33 -24.74 -0.16 -1.19 16 5 C -0.13 -1.16 6.83 -25.08 -0.17 -1.33 16 6 C -0.11 -1.24 6.09 -25.61 -0.16 -1.39 16 7 C -0.05 -0.67 0.80 -154.54 -0.12 -0.80 16 8 C -0.14 -1.50 6.90 37.16 0.26 -1.24 16 9 C 0.46 7.93 6.34 36.01 0.23 8.16 16 10 O -0.52 -10.15 15.16 -18.75 -0.28 -10.44 16 11 O -0.35 -6.56 8.91 -39.25 -0.35 -6.91 16 12 C 0.09 1.98 4.25 37.16 0.16 2.14 16 13 C 0.04 1.01 0.58 -155.66 -0.09 0.92 16 14 C -0.14 -3.04 7.58 37.16 0.28 -2.76 16 15 C -0.15 -3.17 7.55 37.15 0.28 -2.89 16 16 C -0.52 -14.31 8.62 -34.44 -0.30 -14.61 16 17 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 18 C 0.08 2.22 5.32 -17.82 -0.09 2.12 16 19 N -0.89 -26.88 13.96 55.43 0.77 -26.11 16 20 Si 0.88 21.58 22.79 -169.99 -3.87 17.71 16 21 H -0.28 -6.89 7.10 56.52 0.40 -6.49 16 22 H -0.30 -7.52 7.11 56.52 0.40 -7.11 16 23 H -0.25 -5.56 4.65 56.52 0.26 -5.30 16 24 H 0.06 0.51 6.39 -51.93 -0.33 0.18 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.65 7.85 -51.93 -0.41 0.24 16 27 H 0.07 0.53 8.06 -51.93 -0.42 0.11 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.76 7.67 -51.93 -0.40 0.36 16 32 H 0.07 0.92 7.66 -51.93 -0.40 0.52 16 33 H 0.07 0.59 7.64 -51.93 -0.40 0.19 16 34 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 35 H 0.06 0.70 6.71 -51.93 -0.35 0.35 16 36 H 0.06 1.35 8.13 -51.93 -0.42 0.93 16 37 H 0.06 1.39 8.13 -51.93 -0.42 0.97 16 38 H 0.03 0.63 7.94 -51.93 -0.41 0.22 16 39 H 0.05 1.24 4.30 -51.93 -0.22 1.01 16 40 H 0.04 0.92 8.12 -51.93 -0.42 0.50 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.04 0.90 2.25 -51.93 -0.12 0.78 16 43 H 0.04 0.79 7.68 -51.92 -0.40 0.39 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 328.06 15.07 4.94 4.94 Total: -1.00 -30.38 328.06 -6.32 -36.70 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -7.70 Total: -0.70 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 0.17 Total: -15.20 kcal Atomic # 7 Polarization: -26.88 SS G_CDS: 0.77 Total: -26.11 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.63 Total: -17.35 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -3.87 Total: 17.71 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.38 -6.32 -36.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835304543.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.671 kcal (2) G-P(sol) polarization free energy of solvation -30.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds